Wall clock time and date at job start Tue Mar 31 2020 13:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47456 * 2 1 4 4 O 1.42905 * 109.47118 * 240.00272 * 2 1 3 5 5 C 1.52999 * 109.47167 * 120.00501 * 2 1 3 6 6 H 1.08999 * 109.53767 * 65.09546 * 5 2 1 7 7 C 1.53118 * 109.50135 * 304.99802 * 5 2 1 8 8 C 1.53121 * 109.21283 * 182.37642 * 7 5 2 9 9 C 1.53167 * 109.20834 * 57.62366 * 8 7 5 10 10 N 1.46856 * 109.55833 * 300.85777 * 9 8 7 11 11 C 1.46899 * 110.99820 * 185.84087 * 10 9 8 12 12 C 1.50697 * 109.47268 * 45.79244 * 11 10 9 13 13 C 1.38291 * 119.93388 * 269.72250 * 12 11 10 14 14 C 1.38098 * 120.07193 * 179.72418 * 13 12 11 15 15 C 1.38877 * 119.93002 * 0.52799 * 14 13 12 16 16 O 1.35749 * 120.07358 * 179.72187 * 15 14 13 17 17 C 1.34832 * 117.00289 * 174.48957 * 16 15 14 18 18 H 1.08000 * 119.99682 * 5.05926 * 17 16 15 19 19 C 1.38654 * 119.99967 * 185.06092 * 17 16 15 20 20 N 1.31554 * 120.00323 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99715 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47000 * 60.00252 * 21 19 17 23 23 H 1.48502 * 109.46618 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47082 * 300.00075 * 21 19 17 25 25 C 1.38883 * 119.85857 * 359.74768 * 15 14 13 26 26 C 1.38092 * 119.93408 * 0.02562 * 25 15 14 27 27 C 1.46842 * 111.19233 * 61.74553 * 10 9 8 28 28 H 1.09003 * 109.46989 * 299.99673 * 1 2 3 29 29 H 1.09003 * 109.47552 * 60.00013 * 1 2 3 30 30 H 1.09006 * 109.47247 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47036 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.46858 * 300.00011 * 3 2 1 33 33 H 1.09003 * 109.46755 * 60.00184 * 3 2 1 34 34 H 0.96707 * 113.99652 * 299.99880 * 4 2 1 35 35 H 1.09006 * 109.52401 * 302.30638 * 7 5 2 36 36 H 1.09001 * 109.52392 * 62.43896 * 7 5 2 37 37 H 1.09002 * 109.50194 * 177.62696 * 8 7 5 38 38 H 1.09007 * 109.50056 * 297.74455 * 8 7 5 39 39 H 1.09003 * 109.44338 * 180.83934 * 9 8 7 40 40 H 1.08997 * 109.44377 * 60.88262 * 9 8 7 41 41 H 1.08998 * 109.46534 * 165.79422 * 11 10 9 42 42 H 1.09001 * 109.46931 * 285.79049 * 11 10 9 43 43 H 1.08003 * 119.96634 * 359.97438 * 13 12 11 44 44 H 1.08000 * 120.03695 * 180.27284 * 14 13 12 45 45 H 0.96995 * 120.00473 * 179.97438 * 20 19 17 46 46 H 1.08001 * 120.02994 * 180.02562 * 25 15 14 47 47 H 1.08003 * 119.96822 * 180.02562 * 26 25 15 48 48 H 1.09003 * 109.46195 * 178.24086 * 27 10 9 49 49 H 1.09005 * 109.45854 * 58.26749 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0399 -0.7214 1.2492 6 1 1.7536 -1.7722 1.2057 7 6 1.4298 -0.0765 2.4967 8 6 1.9901 -0.7643 3.7447 9 6 3.5176 -0.6517 3.7394 10 7 4.0530 -1.2838 2.5267 11 6 5.5213 -1.3170 2.5548 12 6 5.9874 -1.7882 3.9082 13 6 6.2245 -0.8699 4.9146 14 6 6.6462 -1.2990 6.1576 15 6 6.8427 -2.6535 6.3932 16 8 7.2626 -3.0780 7.6123 17 6 7.3235 -4.4105 7.8090 18 1 7.1238 -5.0867 6.9909 19 6 7.6424 -4.9126 9.0615 20 7 7.8861 -4.0889 10.0579 21 14 7.7261 -6.7587 9.3340 22 1 8.7564 -7.3449 8.4395 23 1 8.0834 -7.0344 10.7488 24 1 6.4046 -7.3643 9.0306 25 6 6.6091 -3.5727 5.3787 26 6 6.1830 -3.1377 4.1393 27 6 3.5648 -0.6097 1.3170 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.7209 -1.5952 -1.2330 35 1 1.6837 0.9834 2.5201 36 1 0.3461 -0.1911 2.4731 37 1 1.5911 -0.2811 4.6366 38 1 1.7030 -1.8159 3.7405 39 1 3.9215 -1.1532 4.6188 40 1 3.8039 0.3999 3.7574 41 1 5.8839 -2.0007 1.7873 42 1 5.9110 -0.3171 2.3641 43 1 6.0759 0.1837 4.7295 44 1 6.8270 -0.5817 6.9445 45 1 8.1089 -4.4401 10.9341 46 1 6.7606 -4.6268 5.5590 47 1 6.0008 -3.8522 3.3501 48 1 4.0029 -1.0806 0.4369 49 1 3.8509 0.4417 1.3466 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879962883.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:56 Heat of formation + Delta-G solvation = -80.731867 kcal Electronic energy + Delta-G solvation = -27180.753188 eV Core-core repulsion = 23493.021193 eV Total energy + Delta-G solvation = -3687.731995 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.18118 -40.56741 -38.92485 -37.62766 -34.99063 -34.22860 -32.97668 -31.82037 -31.43559 -29.98750 -28.41316 -27.65837 -26.49604 -24.50789 -23.76845 -23.58186 -22.19460 -21.17699 -20.09081 -19.79950 -18.82156 -17.72207 -16.84880 -16.57031 -16.46693 -16.24803 -15.81316 -15.69284 -15.52932 -15.33871 -15.04695 -14.96034 -14.84130 -14.40667 -14.11722 -14.05018 -13.69184 -13.50003 -13.30712 -13.04721 -12.96445 -12.87119 -12.81889 -12.60248 -12.54240 -12.33815 -12.19251 -12.14693 -12.04160 -11.73066 -11.50337 -11.39620 -11.17728 -11.05655 -10.77711 -10.55627 -9.76737 -9.23078 -8.84239 -8.47146 -6.15260 0.58744 0.66451 1.34812 1.45403 1.51010 2.17853 2.73110 3.02350 3.27025 3.39678 3.51076 3.76017 3.83785 3.88668 4.02556 4.07761 4.14093 4.18470 4.21994 4.30301 4.44548 4.49063 4.51307 4.58400 4.69590 4.72906 4.75338 4.79299 4.82008 4.85403 4.94407 5.01420 5.04436 5.07926 5.09821 5.14666 5.15780 5.16524 5.25048 5.29124 5.33505 5.45368 5.55575 5.56484 5.71405 5.81141 6.02704 6.16099 6.20338 6.30345 6.93367 6.97518 7.78138 8.75829 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.026825 B = 0.002408 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.535467 B =11626.834249 C =11720.173553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.135 3.865 3 C -0.146 4.146 4 O -0.576 6.576 5 C -0.099 4.099 6 H 0.075 0.925 7 C -0.112 4.112 8 C -0.116 4.116 9 C 0.053 3.947 10 N -0.540 5.540 11 C 0.115 3.885 12 C -0.156 4.156 13 C -0.057 4.057 14 C -0.203 4.203 15 C 0.116 3.884 16 O -0.232 6.232 17 C -0.414 4.414 18 H 0.101 0.899 19 C -0.023 4.023 20 N -0.921 5.921 21 Si 1.018 2.982 22 H -0.257 1.257 23 H -0.271 1.271 24 H -0.258 1.258 25 C -0.242 4.242 26 C -0.050 4.050 27 C 0.066 3.934 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.388 0.612 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.031 0.969 41 H 0.086 0.914 42 H 0.044 0.956 43 H 0.138 0.862 44 H 0.112 0.888 45 H 0.273 0.727 46 H 0.118 0.882 47 H 0.136 0.864 48 H 0.074 0.926 49 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.882 7.877 -20.952 26.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.095 3.905 3 C -0.203 4.203 4 O -0.384 6.384 5 C -0.118 4.118 6 H 0.094 0.906 7 C -0.149 4.149 8 C -0.154 4.154 9 C -0.075 4.075 10 N -0.264 5.264 11 C -0.011 4.011 12 C -0.157 4.157 13 C -0.076 4.076 14 C -0.222 4.222 15 C 0.065 3.935 16 O -0.138 6.138 17 C -0.490 4.490 18 H 0.118 0.882 19 C -0.220 4.220 20 N -0.559 5.559 21 Si 0.837 3.163 22 H -0.181 1.181 23 H -0.196 1.196 24 H -0.182 1.182 25 C -0.262 4.262 26 C -0.068 4.068 27 C -0.062 4.062 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.237 0.763 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.049 0.951 41 H 0.105 0.895 42 H 0.062 0.938 43 H 0.156 0.844 44 H 0.130 0.870 45 H 0.082 0.918 46 H 0.135 0.865 47 H 0.153 0.847 48 H 0.093 0.907 49 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -14.649 8.105 -20.672 26.601 hybrid contribution 0.480 -0.565 0.935 1.193 sum -14.169 7.540 -19.736 25.439 Atomic orbital electron populations 1.22505 0.94681 1.03053 1.03093 1.21154 0.93176 0.92572 0.83645 1.21903 1.01639 0.93990 1.02738 1.86519 1.77752 1.30064 1.44090 1.21765 0.94363 1.00485 0.95158 0.90630 1.21725 1.00667 0.99548 0.92952 1.21600 0.93932 1.01185 0.98644 1.22161 0.95855 0.96397 0.93118 1.62015 1.07455 1.54467 1.02507 1.20823 0.87170 0.99847 0.93295 1.19531 1.06648 0.92998 0.96545 1.20805 0.96304 0.99595 0.90868 1.20389 1.10103 0.92382 0.99341 1.19916 0.93019 0.94507 0.86047 1.83939 1.75132 1.26044 1.28733 1.21773 1.49879 0.79534 0.97794 0.88189 1.26581 0.95839 1.05978 0.93603 1.70173 1.45918 1.37574 1.02227 0.84666 0.79809 0.73675 0.78186 1.18138 1.19581 1.18207 1.21239 1.10471 0.99648 0.94794 1.20875 0.95116 0.95779 0.95072 1.22125 0.95517 0.96455 0.92064 0.90527 0.92008 0.91675 0.92539 0.92135 0.90079 0.76322 0.91392 0.90077 0.91067 0.92259 0.92156 0.95079 0.89524 0.93776 0.84399 0.86991 0.91831 0.86455 0.84651 0.90738 0.94653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.82 8.33 71.98 0.60 -1.22 16 2 C 0.14 1.79 0.87 -10.80 -0.01 1.78 16 3 C -0.15 -1.97 8.11 71.98 0.58 -1.39 16 4 O -0.58 -8.71 12.54 -148.98 -1.87 -10.58 16 5 C -0.10 -1.50 1.93 -10.74 -0.02 -1.52 16 6 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 7 C -0.11 -1.65 4.51 30.67 0.14 -1.51 16 8 C -0.12 -2.30 6.11 30.69 0.19 -2.11 16 9 C 0.05 1.27 4.58 86.37 0.40 1.66 16 10 N -0.54 -12.54 4.80 -900.64 -4.32 -16.86 16 11 C 0.12 2.83 5.43 85.56 0.46 3.30 16 12 C -0.16 -4.93 4.12 -19.84 -0.08 -5.02 16 13 C -0.06 -1.93 7.80 22.25 0.17 -1.76 16 14 C -0.20 -8.69 9.99 22.39 0.22 -8.47 16 15 C 0.12 5.81 6.65 22.58 0.15 5.96 16 16 O -0.23 -14.11 9.76 -22.76 -0.22 -14.33 16 17 C -0.41 -24.33 9.49 67.92 0.64 -23.69 16 18 H 0.10 5.41 5.20 -2.91 -0.02 5.39 16 19 C -0.02 -1.29 5.49 84.83 0.47 -0.83 16 20 N -0.92 -56.91 13.67 21.61 0.30 -56.61 16 21 Si 1.02 43.14 29.55 68.60 2.03 45.17 16 22 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 23 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 24 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 25 C -0.24 -10.70 9.17 22.39 0.21 -10.50 16 26 C -0.05 -1.76 9.69 22.25 0.22 -1.55 16 27 C 0.07 1.24 4.13 86.33 0.36 1.59 16 28 H 0.08 0.69 6.40 -2.39 -0.02 0.68 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 31 H 0.06 0.87 6.33 -2.39 -0.02 0.86 16 32 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.08 0.91 6.52 -2.39 -0.02 0.90 16 34 H 0.39 3.48 9.05 -74.05 -0.67 2.81 16 35 H 0.07 0.95 6.47 -2.38 -0.02 0.93 16 36 H 0.08 0.97 6.50 -2.39 -0.02 0.96 16 37 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 39 H 0.06 1.83 5.65 -2.39 -0.01 1.81 16 40 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.09 1.97 8.08 -2.39 -0.02 1.95 16 42 H 0.04 1.00 8.02 -2.39 -0.02 0.98 16 43 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 44 H 0.11 4.76 8.06 -2.91 -0.02 4.74 16 45 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 46 H 0.12 5.29 5.64 -2.91 -0.02 5.27 16 47 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 48 H 0.07 1.45 7.83 -2.39 -0.02 1.43 16 49 H 0.04 0.67 6.29 -2.38 -0.02 0.65 16 Total: -1.00 -70.44 375.50 0.88 -69.56 By element: Atomic # 1 Polarization: 28.63 SS G_CDS: 0.28 Total: 28.91 kcal Atomic # 6 Polarization: -49.94 SS G_CDS: 4.69 Total: -45.25 kcal Atomic # 7 Polarization: -69.45 SS G_CDS: -4.03 Total: -73.48 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -2.09 Total: -24.91 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -70.44 0.88 -69.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879962883.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.172 kcal (2) G-P(sol) polarization free energy of solvation -70.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds