Wall clock time and date at job start Tue Mar 31 2020 13:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46944 * 2 1 4 4 C 1.53003 * 109.47254 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.46924 * 55.00167 * 4 3 2 6 6 C 1.52998 * 109.46966 * 295.00019 * 4 3 2 7 7 C 1.52994 * 109.47315 * 175.00197 * 4 3 2 8 8 C 1.52997 * 109.47252 * 185.00228 * 7 4 3 9 9 N 1.46503 * 109.47120 * 179.97438 * 8 7 4 10 10 C 1.34778 * 119.99854 * 179.97438 * 9 8 7 11 11 O 1.21281 * 119.99869 * 0.02562 * 10 9 8 12 12 C 1.50697 * 119.99935 * 179.97438 * 10 9 8 13 13 C 1.50701 * 109.47172 * 180.02562 * 12 10 9 14 14 C 1.38306 * 119.92831 * 269.73130 * 13 12 10 15 15 C 1.38102 * 120.06255 * 179.72851 * 14 13 12 16 16 C 1.38874 * 119.93471 * 0.55990 * 15 14 13 17 17 O 1.35746 * 120.07278 * 179.68564 * 16 15 14 18 18 C 1.34830 * 117.00185 * 174.49153 * 17 16 15 19 19 H 1.07997 * 120.00272 * 5.05566 * 18 17 16 20 20 C 1.38664 * 119.99865 * 185.05624 * 18 17 16 21 21 N 1.31557 * 119.99688 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99990 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.46858 * 89.99834 * 22 20 18 24 24 H 1.48493 * 109.46815 * 209.99810 * 22 20 18 25 25 H 1.48500 * 109.47164 * 329.99931 * 22 20 18 26 26 C 1.38883 * 119.86049 * 359.71245 * 16 15 14 27 27 C 1.38098 * 119.92837 * 359.97438 * 26 16 15 28 28 H 1.09004 * 109.47424 * 299.99517 * 1 2 3 29 29 H 1.09005 * 109.46876 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47507 * 59.99733 * 1 2 3 31 31 H 1.08998 * 109.47267 * 119.99805 * 2 1 3 32 32 H 1.09004 * 109.47167 * 239.99997 * 2 1 3 33 33 H 1.08995 * 109.47237 * 300.00433 * 3 2 1 34 34 H 1.09004 * 109.47191 * 60.00012 * 3 2 1 35 35 H 1.09006 * 109.47209 * 60.00212 * 6 4 3 36 36 H 1.09000 * 109.46900 * 179.97438 * 6 4 3 37 37 H 1.08996 * 109.47420 * 299.99845 * 6 4 3 38 38 H 1.09002 * 109.47188 * 305.00152 * 7 4 3 39 39 H 1.08997 * 109.47314 * 64.99507 * 7 4 3 40 40 H 1.09002 * 109.46962 * 300.00063 * 8 7 4 41 41 H 1.08997 * 109.47107 * 59.99723 * 8 7 4 42 42 H 0.96996 * 120.00365 * 0.02562 * 9 8 7 43 43 H 1.09002 * 109.47486 * 300.00544 * 12 10 9 44 44 H 1.09007 * 109.47018 * 60.00463 * 12 10 9 45 45 H 1.08003 * 119.96782 * 359.97438 * 14 13 12 46 46 H 1.08002 * 120.03164 * 180.27381 * 15 14 13 47 47 H 0.96997 * 120.00031 * 180.02562 * 21 20 18 48 48 H 1.08001 * 120.03345 * 179.97438 * 26 16 15 49 49 H 1.08004 * 119.96388 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9329 0.8533 -0.8427 6 6 4.0805 0.8328 1.3064 7 6 4.0799 2.8796 -0.1263 8 6 5.6046 2.8705 -0.2524 9 7 6.0928 4.2465 -0.3734 10 6 7.4137 4.4845 -0.4964 11 8 8.1980 3.5596 -0.5075 12 6 7.9158 5.8999 -0.6214 13 6 9.4177 5.8910 -0.7455 14 6 10.2043 5.9627 0.3898 15 6 11.5808 5.9491 0.2797 16 6 12.1751 5.8750 -0.9733 17 8 13.5279 5.8679 -1.0852 18 6 14.0392 5.6795 -2.3185 19 1 13.3813 5.6246 -3.1732 20 6 15.4097 5.5561 -2.4894 21 7 15.9085 5.3718 -3.6927 22 14 16.5476 5.6503 -1.0110 23 1 16.7453 4.2892 -0.4511 24 1 17.8583 6.2084 -1.4300 25 1 15.9436 6.5281 0.0234 26 6 11.3824 5.8088 -2.1118 27 6 10.0064 5.8163 -1.9946 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9564 0.8900 35 1 3.7173 -0.1911 1.3959 36 1 5.1705 0.8325 1.3057 37 1 3.7175 1.4221 2.1484 38 1 3.6448 3.3434 -1.0116 39 1 3.7918 3.4461 0.7592 40 1 6.0396 2.4067 0.6329 41 1 5.8926 2.3041 -1.1380 42 1 5.4655 4.9863 -0.3641 43 1 7.4811 6.3628 -1.5074 44 1 7.6274 6.4672 0.2635 45 1 9.7416 6.0254 1.3637 46 1 12.1946 6.0007 1.1668 47 1 16.8672 5.2852 -3.8123 48 1 11.8416 5.7515 -3.0876 49 1 9.3894 5.7652 -2.8796 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881528964.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:46 Heat of formation + Delta-G solvation = -94.798487 kcal Electronic energy + Delta-G solvation = -25326.911661 eV Core-core repulsion = 21638.569691 eV Total energy + Delta-G solvation = -3688.341969 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.13678 -40.46292 -38.65726 -38.17671 -35.85522 -34.52342 -33.68595 -32.87389 -31.80709 -29.88821 -28.20113 -27.60146 -26.73634 -24.54220 -23.70703 -22.47271 -22.04641 -21.37914 -20.62628 -19.81792 -19.11322 -17.86790 -17.23147 -16.88347 -16.57917 -16.34903 -15.98488 -15.79540 -15.65895 -15.34172 -15.23355 -14.95711 -14.58747 -14.38454 -14.29416 -14.28237 -14.09077 -14.01839 -13.33285 -13.04669 -12.86171 -12.85581 -12.66972 -12.50735 -12.47766 -12.40728 -12.31204 -12.23155 -11.93045 -11.70267 -11.45999 -11.32538 -11.28339 -11.26261 -10.94483 -10.75952 -10.01201 -9.78833 -8.97985 -8.50841 -6.23398 0.58526 0.62088 1.29606 1.34564 1.50902 1.75820 2.27547 2.29915 2.79218 3.05798 3.18745 3.75773 3.85588 3.93570 3.96584 4.04036 4.15322 4.20914 4.25638 4.36124 4.42269 4.46258 4.49724 4.58033 4.60159 4.70450 4.72229 4.82388 4.83927 4.88498 4.95516 4.98459 5.04182 5.09484 5.14756 5.18663 5.25732 5.29486 5.32353 5.37696 5.42034 5.53484 5.56654 5.57051 5.59195 5.74080 5.79651 5.91124 6.25089 6.67839 6.83360 7.40320 7.58114 8.61016 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.028685 B = 0.001760 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.880422 B =15900.837038 C =16103.618550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.129 4.129 3 C -0.108 4.108 4 C -0.089 4.089 5 H 0.064 0.936 6 C -0.153 4.153 7 C -0.114 4.114 8 C 0.117 3.883 9 N -0.719 5.719 10 C 0.507 3.493 11 O -0.585 6.585 12 C -0.079 4.079 13 C -0.138 4.138 14 C -0.060 4.060 15 C -0.194 4.194 16 C 0.117 3.883 17 O -0.246 6.246 18 C -0.401 4.401 19 H 0.078 0.922 20 C 0.010 3.990 21 N -0.924 5.924 22 Si 0.972 3.028 23 H -0.268 1.268 24 H -0.264 1.264 25 H -0.262 1.262 26 C -0.239 4.239 27 C -0.066 4.066 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.044 0.956 37 H 0.061 0.939 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.054 0.946 41 H 0.045 0.955 42 H 0.418 0.582 43 H 0.127 0.873 44 H 0.136 0.864 45 H 0.154 0.846 46 H 0.128 0.872 47 H 0.285 0.715 48 H 0.106 0.894 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.302 -3.234 10.680 35.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.167 4.167 3 C -0.146 4.146 4 C -0.108 4.108 5 H 0.082 0.918 6 C -0.210 4.210 7 C -0.151 4.151 8 C -0.007 4.007 9 N -0.373 5.373 10 C 0.294 3.706 11 O -0.464 6.464 12 C -0.118 4.118 13 C -0.139 4.139 14 C -0.078 4.078 15 C -0.213 4.213 16 C 0.068 3.932 17 O -0.154 6.154 18 C -0.477 4.477 19 H 0.096 0.904 20 C -0.189 4.189 21 N -0.564 5.564 22 Si 0.794 3.206 23 H -0.193 1.193 24 H -0.188 1.188 25 H -0.186 1.186 26 C -0.258 4.258 27 C -0.084 4.084 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.256 0.744 43 H 0.145 0.855 44 H 0.154 0.846 45 H 0.172 0.828 46 H 0.146 0.854 47 H 0.094 0.906 48 H 0.124 0.876 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -32.414 -3.896 10.705 34.357 hybrid contribution 0.890 -0.089 -0.360 0.964 sum -31.523 -3.985 10.345 33.416 Atomic orbital electron populations 1.21777 0.95608 1.01701 1.01940 1.21600 0.96055 0.97102 1.01906 1.21606 0.93644 0.96849 1.02498 1.21073 0.95981 0.95414 0.98325 0.91763 1.21959 1.00500 1.01207 0.97346 1.21771 0.91812 0.97755 1.03799 1.21398 0.95571 0.83036 1.00724 1.45903 1.06979 1.09727 1.74679 1.21222 0.82287 0.92064 0.74982 1.90756 1.56892 1.47759 1.50997 1.20563 0.90702 0.92977 1.07585 1.19344 0.95518 1.06604 0.92461 1.20960 0.91319 0.96295 0.99196 1.20513 0.95953 1.10603 0.94221 1.19681 0.82905 0.95315 0.95278 1.83505 1.17863 1.82398 1.31629 1.20715 0.93042 1.51305 0.82678 0.90410 1.25299 0.97623 0.95394 1.00551 1.69731 1.14654 1.49207 1.22850 0.85198 0.77492 0.79372 0.78508 1.19319 1.18829 1.18646 1.21257 0.95372 1.11186 0.98031 1.20915 0.92735 0.96492 0.98230 0.92518 0.92819 0.92665 0.91919 0.92551 0.91539 0.91377 0.92232 0.93663 0.92038 0.90010 0.89839 0.92813 0.93689 0.74421 0.85514 0.84630 0.82850 0.85375 0.90555 0.87620 0.84973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 71.98 0.71 -0.49 16 2 C -0.13 -1.14 5.69 30.59 0.17 -0.97 16 3 C -0.11 -0.86 4.68 30.60 0.14 -0.72 16 4 C -0.09 -0.89 2.39 -10.80 -0.03 -0.91 16 5 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 6 C -0.15 -1.72 8.70 71.98 0.63 -1.09 16 7 C -0.11 -1.02 4.80 30.59 0.15 -0.87 16 8 C 0.12 1.90 5.43 86.38 0.47 2.36 16 9 N -0.72 -10.98 5.56 -463.06 -2.57 -13.56 16 10 C 0.51 12.15 7.82 87.66 0.69 12.83 16 11 O -0.58 -21.43 16.03 -3.03 -0.05 -21.48 16 12 C -0.08 -1.51 5.83 29.10 0.17 -1.34 16 13 C -0.14 -4.32 4.38 -19.83 -0.09 -4.41 16 14 C -0.06 -1.96 9.69 22.25 0.22 -1.74 16 15 C -0.19 -7.97 9.99 22.39 0.22 -7.74 16 16 C 0.12 5.87 6.65 22.58 0.15 6.02 16 17 O -0.25 -14.15 8.59 -22.69 -0.19 -14.34 16 18 C -0.40 -24.82 9.95 67.92 0.68 -24.14 16 19 H 0.08 5.06 5.44 -2.91 -0.02 5.04 16 20 C 0.01 0.57 5.49 84.84 0.47 1.04 16 21 N -0.92 -56.94 13.96 21.62 0.30 -56.63 16 22 Si 0.97 47.17 28.62 68.60 1.96 49.14 16 23 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 24 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 25 H -0.26 -12.66 7.11 99.48 0.71 -11.96 16 26 C -0.24 -11.35 9.17 22.39 0.21 -11.14 16 27 C -0.07 -2.45 9.69 22.25 0.22 -2.23 16 28 H 0.06 0.41 8.14 -2.38 -0.02 0.39 16 29 H 0.05 0.41 8.14 -2.38 -0.02 0.39 16 30 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.06 0.57 6.57 -2.39 -0.02 0.56 16 32 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 33 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 35 H 0.06 0.64 6.57 -2.38 -0.02 0.62 16 36 H 0.04 0.64 6.57 -2.39 -0.02 0.62 16 37 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.05 1.06 6.57 -2.39 -0.02 1.04 16 41 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.42 2.97 8.47 -92.71 -0.79 2.18 16 43 H 0.13 1.69 8.08 -2.39 -0.02 1.68 16 44 H 0.14 1.57 8.08 -2.38 -0.02 1.55 16 45 H 0.15 3.72 8.06 -2.91 -0.02 3.69 16 46 H 0.13 4.85 8.06 -2.91 -0.02 4.83 16 47 H 0.28 16.05 8.31 -92.71 -0.77 15.28 16 48 H 0.11 5.48 5.64 -2.91 -0.02 5.47 16 49 H 0.13 4.15 8.06 -2.91 -0.02 4.13 16 Total: -1.00 -79.50 398.36 4.76 -74.74 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: 0.15 Total: 17.69 kcal Atomic # 6 Polarization: -40.72 SS G_CDS: 5.17 Total: -35.55 kcal Atomic # 7 Polarization: -67.92 SS G_CDS: -2.27 Total: -70.19 kcal Atomic # 8 Polarization: -35.58 SS G_CDS: -0.24 Total: -35.82 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 1.96 Total: 49.14 kcal Total: -79.50 4.76 -74.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881528964.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.063 kcal (2) G-P(sol) polarization free energy of solvation -79.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds