Wall clock time and date at job start Tue Mar 31 2020 12:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 119.99715 * 2 1 4 4 C 1.50701 * 120.00355 * 180.02562 * 2 1 3 5 5 C 1.52999 * 109.47214 * 94.99661 * 4 2 1 6 6 H 1.08995 * 109.46875 * 304.99872 * 5 4 2 7 7 C 1.53006 * 109.46924 * 184.99830 * 5 4 2 8 8 O 1.42897 * 109.47067 * 305.00464 * 7 5 4 9 9 N 1.46900 * 109.47196 * 64.99987 * 5 4 2 10 10 C 1.46896 * 111.00195 * 204.99701 * 9 5 4 11 11 C 1.50697 * 109.47382 * 179.97438 * 10 9 5 12 12 C 1.38280 * 119.97205 * 270.02476 * 11 10 9 13 13 C 1.38255 * 120.11174 * 179.97438 * 12 11 10 14 14 C 1.38163 * 120.05063 * 359.76900 * 13 12 11 15 15 C 1.38710 * 119.94702 * 0.48231 * 14 13 12 16 16 O 1.35900 * 120.05544 * 179.76528 * 15 14 13 17 17 C 1.42898 * 117.00172 * 359.72769 * 16 15 14 18 18 C 1.52997 * 109.47319 * 179.97438 * 17 16 15 19 19 C 1.50697 * 109.47466 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99890 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00428 * 179.97438 * 19 18 17 22 22 N 1.31517 * 120.00362 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 119.99850 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.47052 * 89.99717 * 23 21 19 25 25 H 1.48495 * 109.47307 * 209.99656 * 23 21 19 26 26 H 1.48500 * 109.47143 * 330.00164 * 23 21 19 27 27 C 1.38129 * 119.97079 * 90.00085 * 11 10 9 28 28 H 1.07995 * 120.00380 * 359.97438 * 1 2 3 29 29 H 1.08005 * 119.99535 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47308 * 270.00413 * 3 2 1 31 31 H 1.08999 * 109.46788 * 30.00920 * 3 2 1 32 32 H 1.09006 * 109.46888 * 150.00186 * 3 2 1 33 33 H 1.08994 * 109.46973 * 334.99610 * 4 2 1 34 34 H 1.09005 * 109.46882 * 214.99965 * 4 2 1 35 35 H 1.09009 * 109.46785 * 65.00119 * 7 5 4 36 36 H 1.08997 * 109.46802 * 184.99462 * 7 5 4 37 37 H 0.96703 * 113.99605 * 180.02562 * 8 7 5 38 38 H 1.00901 * 111.00271 * 328.95420 * 9 5 4 39 39 H 1.09005 * 109.46944 * 59.99947 * 10 9 5 40 40 H 1.09002 * 109.47398 * 300.00389 * 10 9 5 41 41 H 1.08000 * 119.95034 * 0.02562 * 12 11 10 42 42 H 1.07991 * 119.97457 * 180.02562 * 13 12 11 43 43 H 1.08006 * 120.02763 * 180.24929 * 14 13 12 44 44 H 1.09002 * 109.47259 * 300.00149 * 17 16 15 45 45 H 1.09001 * 109.47074 * 60.00171 * 17 16 15 46 46 H 1.09002 * 109.47153 * 300.00307 * 18 17 16 47 47 H 1.08998 * 109.47533 * 59.99936 * 18 17 16 48 48 H 0.96994 * 119.99814 * 180.02562 * 22 21 19 49 49 H 1.07998 * 120.02418 * 0.02613 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0636 -1.3051 -0.0006 5 6 2.4274 -1.6833 -1.4378 6 1 1.5245 -1.7025 -2.0480 7 6 3.0816 -3.0663 -1.4511 8 8 4.1985 -3.0735 -0.5597 9 7 3.3655 -0.6926 -1.9823 10 6 3.2889 -0.6453 -3.4485 11 6 4.2625 0.3801 -3.9696 12 6 3.8603 1.6925 -4.1365 13 6 4.7513 2.6357 -4.6139 14 6 6.0477 2.2698 -4.9209 15 6 6.4522 0.9528 -4.7593 16 8 7.7255 0.5895 -5.0652 17 6 8.5930 1.6144 -5.5540 18 6 9.9734 1.0203 -5.8408 19 6 10.8885 2.1013 -6.3558 20 1 10.5222 3.1112 -6.4669 21 6 12.1936 1.8013 -6.6840 22 7 12.9923 2.7448 -7.1329 23 14 12.8278 0.0550 -6.4897 24 1 12.5994 -0.6976 -7.7494 25 1 14.2816 0.0869 -6.1888 26 1 12.1064 -0.6126 -5.3766 27 6 5.5562 0.0083 -4.2797 28 1 -0.5400 0.9352 0.0004 29 1 -0.5400 -0.9354 -0.0004 30 1 2.2450 1.6199 -1.0276 31 1 1.4743 2.0647 0.5140 32 1 3.0159 1.1748 0.5138 33 1 1.4387 -2.0856 0.4334 34 1 2.9743 -1.1990 0.5889 35 1 2.3563 -3.8144 -1.1308 36 1 3.4208 -3.2981 -2.4607 37 1 4.6627 -3.9209 -0.5177 38 1 3.2015 0.2190 -1.5820 39 1 2.2778 -0.3723 -3.7508 40 1 3.5384 -1.6245 -3.8572 41 1 2.8486 1.9816 -3.8927 42 1 4.4349 3.6602 -4.7429 43 1 6.7446 3.0078 -5.2900 44 1 8.1796 2.0334 -6.4715 45 1 8.6848 2.4007 -4.8047 46 1 10.3866 0.6017 -4.9232 47 1 9.8821 0.2338 -6.5899 48 1 13.9103 2.5337 -7.3641 49 1 5.8698 -1.0169 -4.1492 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883399963.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:10 Heat of formation + Delta-G solvation = -58.127876 kcal Electronic energy + Delta-G solvation = -26119.356289 eV Core-core repulsion = 22432.604477 eV Total energy + Delta-G solvation = -3686.751812 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.91441 -38.89869 -37.36545 -36.31774 -34.84391 -33.33214 -31.90547 -31.08730 -29.76913 -29.10419 -27.60997 -26.54231 -25.55182 -24.63604 -22.37095 -21.39049 -20.93899 -20.14602 -18.86491 -17.72066 -17.64976 -16.68790 -16.31614 -15.76428 -15.61073 -15.47880 -15.36712 -15.32526 -14.33467 -14.13253 -14.11527 -13.89388 -13.87542 -13.51621 -13.27338 -13.06768 -12.77837 -12.59956 -12.25769 -12.19505 -12.13670 -11.78754 -11.58256 -11.47861 -11.40822 -11.34887 -10.98101 -10.80672 -10.59090 -10.19619 -10.16754 -9.97983 -9.80427 -9.39962 -9.33555 -8.77138 -8.61675 -8.55043 -7.88738 -6.12833 -4.13656 1.42619 1.64617 1.82471 3.29378 3.36610 3.42653 3.69549 3.79343 4.05620 4.15874 4.35486 4.39960 4.55920 4.69956 4.80702 4.92127 4.99211 5.06949 5.08802 5.16464 5.21313 5.22906 5.25223 5.29749 5.35904 5.42384 5.45552 5.47587 5.60107 5.66443 5.67507 5.80126 5.85245 5.93662 5.97767 6.16291 6.24097 6.43004 6.47440 6.52695 6.64806 6.65591 6.78261 6.92463 7.12649 7.19966 7.24576 7.49148 7.63494 7.94545 8.39488 8.87823 9.47514 10.99648 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.018174 B = 0.002309 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.322292 B =12125.593745 C =13055.042859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.129 4.129 3 C -0.127 4.127 4 C -0.085 4.085 5 C 0.094 3.906 6 H 0.055 0.945 7 C 0.087 3.913 8 O -0.555 6.555 9 N -0.673 5.673 10 C 0.100 3.900 11 C -0.050 4.050 12 C -0.166 4.166 13 C -0.080 4.080 14 C -0.209 4.209 15 C 0.144 3.856 16 O -0.319 6.319 17 C 0.073 3.927 18 C -0.009 4.009 19 C -0.526 4.526 20 H 0.074 0.926 21 C 0.072 3.928 22 N -0.898 5.898 23 Si 0.881 3.119 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.263 1.263 27 C -0.136 4.136 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.042 0.958 36 H 0.046 0.954 37 H 0.373 0.627 38 H 0.348 0.652 39 H 0.037 0.963 40 H 0.079 0.921 41 H 0.113 0.887 42 H 0.121 0.879 43 H 0.131 0.869 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.028 0.972 47 H 0.023 0.977 48 H 0.266 0.734 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.335 -8.655 12.965 31.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.129 4.129 3 C -0.184 4.184 4 C -0.122 4.122 5 C -0.016 4.016 6 H 0.073 0.927 7 C 0.008 3.992 8 O -0.359 6.359 9 N -0.308 5.308 10 C -0.029 4.029 11 C -0.051 4.051 12 C -0.185 4.185 13 C -0.098 4.098 14 C -0.228 4.228 15 C 0.097 3.903 16 O -0.233 6.233 17 C -0.001 4.001 18 C -0.046 4.046 19 C -0.564 4.564 20 H 0.092 0.908 21 C -0.131 4.131 22 N -0.536 5.536 23 Si 0.707 3.293 24 H -0.201 1.201 25 H -0.212 1.212 26 H -0.187 1.187 27 C -0.155 4.155 28 H 0.115 0.885 29 H 0.114 0.886 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.219 0.781 38 H 0.170 0.830 39 H 0.055 0.945 40 H 0.097 0.903 41 H 0.131 0.869 42 H 0.139 0.861 43 H 0.149 0.851 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.046 0.954 47 H 0.041 0.959 48 H 0.075 0.925 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -26.698 -8.602 13.018 30.923 hybrid contribution -0.250 -0.625 -0.375 0.771 sum -26.948 -9.227 12.644 31.164 Atomic orbital electron populations 1.23701 0.95211 1.01819 1.02812 1.21890 0.95473 0.96107 0.99401 1.20996 1.00741 0.94471 1.02169 1.20798 1.00788 0.94107 0.96555 1.21593 0.92759 0.92173 0.95031 0.92691 1.22174 0.88233 0.95639 0.93123 1.86579 1.45304 1.38455 1.65586 1.60557 1.53934 1.11848 1.04468 1.20916 0.95653 0.98102 0.88188 1.19360 0.93728 0.93971 0.98016 1.20772 0.99624 0.92923 1.05200 1.20846 0.92757 0.99052 0.97121 1.21407 0.98032 0.95910 1.07475 1.19150 0.85183 0.92646 0.93317 1.86124 1.18500 1.39873 1.78760 1.23070 0.90407 0.89311 0.97352 1.19583 0.89735 0.97739 0.97593 1.20839 0.95248 0.95959 1.44360 0.90765 1.24939 0.96547 0.97392 0.94188 1.69894 1.06748 1.32868 1.44083 0.86753 0.78055 0.85087 0.79357 1.20081 1.21178 1.18705 1.20233 0.92000 0.99442 1.03868 0.88499 0.88584 0.91318 0.91578 0.91008 0.90830 0.89185 0.93982 0.93612 0.78074 0.82974 0.94502 0.90276 0.86868 0.86144 0.85138 0.92578 0.92516 0.95378 0.95858 0.92463 0.85462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.34 13.89 29.02 0.40 -0.93 16 2 C -0.13 -0.97 5.05 -101.06 -0.51 -1.48 16 3 C -0.13 -0.93 8.61 36.01 0.31 -0.62 16 4 C -0.08 -0.67 4.73 -27.88 -0.13 -0.80 16 5 C 0.09 0.78 2.43 -67.71 -0.16 0.62 16 6 H 0.06 0.42 7.80 -51.93 -0.41 0.01 16 7 C 0.09 0.68 6.80 37.16 0.25 0.93 16 8 O -0.56 -5.15 12.83 -35.23 -0.45 -5.60 16 9 N -0.67 -6.85 6.25 -107.99 -0.67 -7.52 16 10 C 0.10 1.02 5.61 -4.98 -0.03 0.99 16 11 C -0.05 -0.63 5.39 -104.65 -0.56 -1.20 16 12 C -0.17 -1.98 9.70 -39.56 -0.38 -2.37 16 13 C -0.08 -1.03 10.04 -39.60 -0.40 -1.43 16 14 C -0.21 -3.25 9.04 -39.43 -0.36 -3.61 16 15 C 0.14 2.48 6.69 -39.22 -0.26 2.22 16 16 O -0.32 -6.40 10.14 -19.43 -0.20 -6.60 16 17 C 0.07 1.52 4.68 37.16 0.17 1.70 16 18 C -0.01 -0.22 4.41 -27.89 -0.12 -0.35 16 19 C -0.53 -14.93 9.66 -34.44 -0.33 -15.26 16 20 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 21 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 22 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 23 Si 0.88 21.74 27.47 -169.99 -4.67 17.07 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 27 C -0.14 -2.07 9.64 -39.43 -0.38 -2.45 16 28 H 0.10 0.59 8.04 -52.49 -0.42 0.16 16 29 H 0.10 0.57 7.99 -52.48 -0.42 0.15 16 30 H 0.07 0.50 6.89 -51.93 -0.36 0.15 16 31 H 0.07 0.42 8.06 -51.93 -0.42 0.00 16 32 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 33 H 0.07 0.51 7.99 -51.93 -0.41 0.10 16 34 H 0.09 0.87 7.69 -51.93 -0.40 0.47 16 35 H 0.04 0.25 8.14 -51.92 -0.42 -0.17 16 36 H 0.05 0.36 7.35 -51.93 -0.38 -0.02 16 37 H 0.37 1.99 9.12 45.56 0.42 2.41 16 38 H 0.35 3.47 4.82 -39.29 -0.19 3.28 16 39 H 0.04 0.33 8.00 -51.93 -0.42 -0.09 16 40 H 0.08 0.78 7.31 -51.93 -0.38 0.40 16 41 H 0.11 1.08 8.06 -52.49 -0.42 0.65 16 42 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 43 H 0.13 2.01 6.30 -52.48 -0.33 1.68 16 44 H 0.06 1.13 7.67 -51.93 -0.40 0.73 16 45 H 0.06 1.15 7.65 -51.93 -0.40 0.75 16 46 H 0.03 0.70 7.20 -51.93 -0.37 0.32 16 47 H 0.02 0.57 7.57 -51.93 -0.39 0.17 16 48 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 49 H 0.13 1.89 8.06 -52.49 -0.42 1.46 16 LS Contribution 397.35 15.07 5.99 5.99 Total: -1.00 -32.25 397.35 -9.20 -41.45 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -7.38 Total: 3.89 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: -2.59 Total: -22.05 kcal Atomic # 7 Polarization: -34.24 SS G_CDS: 0.10 Total: -34.14 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: -0.65 Total: -12.20 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.07 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.25 -9.20 -41.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883399963.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.682 kcal (2) G-P(sol) polarization free energy of solvation -32.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds