Wall clock time and date at job start Tue Mar 31 2020 12:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34229 * 116.99660 * 2 1 4 4 O 1.20826 * 120.00517 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99800 * 179.97438 * 3 2 1 6 6 C 1.52999 * 109.47031 * 179.97438 * 5 3 2 7 7 H 1.09002 * 109.47131 * 55.01047 * 6 5 3 8 8 N 1.46902 * 109.47347 * 295.00272 * 6 5 3 9 9 C 1.46896 * 110.99611 * 139.21043 * 8 6 5 10 10 C 1.50703 * 109.47223 * 185.93169 * 9 8 6 11 11 C 1.38636 * 119.75257 * 269.73424 * 10 9 8 12 12 C 1.37613 * 120.24629 * 179.72003 * 11 10 9 13 13 C 1.40711 * 119.75029 * 0.56296 * 12 11 10 14 14 C 1.41391 * 120.24976 * 179.68526 * 13 12 11 15 15 H 1.08001 * 120.00160 * 153.42070 * 14 13 12 16 16 C 1.39953 * 119.99806 * 333.42294 * 14 13 12 17 17 N 1.30820 * 119.99523 * 336.51575 * 16 14 13 18 18 Si 1.86798 * 120.00083 * 156.51961 * 16 14 13 19 19 H 1.48502 * 109.47252 * 94.97989 * 18 16 14 20 20 H 1.48492 * 109.46934 * 214.98388 * 18 16 14 21 21 H 1.48501 * 109.46808 * 334.98296 * 18 16 14 22 22 C 1.40718 * 119.50684 * 359.71086 * 13 12 11 23 23 C 1.37617 * 119.74828 * 359.97438 * 22 13 12 24 24 C 1.53007 * 109.46788 * 175.00449 * 6 5 3 25 25 C 1.52998 * 109.47215 * 63.86909 * 24 6 5 26 26 C 1.52996 * 109.47192 * 303.86257 * 24 6 5 27 27 C 1.53001 * 109.46936 * 183.86711 * 24 6 5 28 28 H 1.09009 * 109.46984 * 60.00202 * 1 2 3 29 29 H 1.08998 * 109.46844 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47473 * 300.00497 * 1 2 3 31 31 H 1.09001 * 109.46824 * 60.00378 * 5 3 2 32 32 H 1.08998 * 109.47588 * 300.00285 * 5 3 2 33 33 H 1.00898 * 110.99713 * 263.16208 * 8 6 5 34 34 H 1.08994 * 109.47403 * 305.93579 * 9 8 6 35 35 H 1.09002 * 109.47227 * 65.93288 * 9 8 6 36 36 H 1.08003 * 119.87356 * 359.96800 * 11 10 9 37 37 H 1.08009 * 120.12491 * 180.27639 * 12 11 10 38 38 H 0.97007 * 119.99519 * 180.02562 * 17 16 14 39 39 H 1.08007 * 120.12803 * 179.97438 * 22 13 12 40 40 H 1.07998 * 119.87829 * 180.02562 * 23 22 13 41 41 H 1.09002 * 109.47446 * 60.00022 * 25 24 6 42 42 H 1.09000 * 109.47035 * 299.99546 * 25 24 6 43 43 H 1.08999 * 109.46599 * 180.02562 * 25 24 6 44 44 H 1.09001 * 109.47546 * 179.97438 * 26 24 6 45 45 H 1.08999 * 109.47579 * 300.00653 * 26 24 6 46 46 H 1.09007 * 109.46910 * 60.00108 * 26 24 6 47 47 H 1.08996 * 109.47304 * 302.72574 * 27 24 6 48 48 H 1.09003 * 109.47159 * 62.72856 * 27 24 6 49 49 H 1.09000 * 109.47582 * 182.72547 * 27 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0000 2.7422 -0.0002 7 1 3.5375 3.2582 0.8412 8 7 3.5780 3.3769 -1.2560 9 6 3.0657 4.7323 -1.0144 10 6 2.5096 5.2951 -2.2970 11 6 3.3353 6.0132 -3.1483 12 6 2.8395 6.5268 -4.3248 13 6 1.4862 6.3309 -4.6568 14 6 0.9642 6.8597 -5.8597 15 1 0.1138 6.3902 -6.3317 16 6 1.5496 7.9914 -6.4388 17 7 2.2390 8.8218 -5.6995 18 14 1.3463 8.3162 -8.2670 19 1 0.1999 9.2354 -8.4820 20 1 2.5853 8.9370 -8.8002 21 1 1.0918 7.0343 -8.9721 22 6 0.6561 5.6053 -3.7824 23 6 1.1749 5.0952 -2.6143 24 6 5.5227 2.8238 0.1260 25 6 6.1714 2.1841 -1.1031 26 6 5.9708 2.0791 1.3851 27 6 5.9485 4.2902 0.2223 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 3.9563 0.7807 -0.8892 32 1 3.9557 0.7810 0.8908 33 1 4.3323 3.3895 -1.9260 34 1 2.2776 4.6942 -0.2625 35 1 3.8760 5.3691 -0.6594 36 1 4.3724 6.1667 -2.8889 37 1 3.4856 7.0822 -4.9887 38 1 2.6444 9.6064 -6.1008 39 1 -0.3842 5.4493 -4.0271 40 1 0.5398 4.5377 -1.9419 41 1 5.8522 2.7147 -2.0001 42 1 5.8681 1.1394 -1.1716 43 1 7.2561 2.2419 -1.0129 44 1 7.0555 2.1368 1.4748 45 1 5.5086 2.5348 2.2608 46 1 5.6674 1.0343 1.3166 47 1 5.5873 4.8316 -0.6521 48 1 5.5255 4.7330 1.1241 49 1 7.0360 4.3509 0.2634 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934033777.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:49 Heat of formation + Delta-G solvation = -81.074177 kcal Electronic energy + Delta-G solvation = -27514.053781 eV Core-core repulsion = 23826.306942 eV Total energy + Delta-G solvation = -3687.746839 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.42329 -38.99018 -37.41658 -36.17273 -34.29159 -33.06512 -31.40642 -29.67162 -29.15618 -27.75352 -27.56113 -27.00230 -25.94976 -23.80604 -22.52889 -20.90198 -20.67403 -19.78996 -18.60860 -17.42422 -17.19402 -16.58935 -16.45197 -15.60322 -15.17141 -15.02201 -14.54687 -14.17236 -14.06609 -13.78429 -13.63061 -13.16893 -13.07396 -13.01307 -12.55025 -12.45375 -12.35509 -12.09354 -11.98309 -11.83903 -11.79124 -11.54094 -11.45027 -11.29426 -11.06564 -10.95899 -10.83739 -10.71923 -10.65512 -10.56487 -10.39532 -10.27879 -10.10279 -9.43561 -9.29426 -9.01244 -7.88381 -7.34905 -7.20456 -6.74343 -4.25496 2.51956 2.81658 2.86402 3.10211 3.14042 3.17454 3.25873 3.98280 4.44540 4.56205 4.61176 4.72652 4.84328 5.00149 5.13144 5.18839 5.22463 5.29564 5.39607 5.46423 5.50641 5.56364 5.63060 5.65690 5.74721 5.77446 5.82401 5.84448 5.94959 6.02959 6.08036 6.15372 6.24649 6.27337 6.41601 6.54762 6.59222 6.62215 7.02215 7.15374 7.34273 7.45532 7.51837 7.71355 7.87882 7.99645 8.04356 8.13006 8.25765 8.40095 8.71017 8.96995 9.06797 10.22993 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014561 B = 0.003244 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.534714 B = 8630.033628 C = 9974.871129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.372 6.372 3 C 0.459 3.541 4 O -0.480 6.480 5 C -0.103 4.103 6 C 0.106 3.894 7 H 0.078 0.922 8 N -0.671 5.671 9 C 0.127 3.873 10 C -0.207 4.207 11 C -0.094 4.094 12 C -0.169 4.169 13 C 0.117 3.883 14 C -0.472 4.472 15 H 0.077 0.923 16 C 0.082 3.918 17 N -0.790 5.790 18 Si 0.899 3.101 19 H -0.271 1.271 20 H -0.276 1.276 21 H -0.260 1.260 22 C -0.229 4.229 23 C -0.063 4.063 24 C -0.092 4.092 25 C -0.147 4.147 26 C -0.143 4.143 27 C -0.148 4.148 28 H 0.063 0.937 29 H 0.095 0.905 30 H 0.058 0.942 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.337 0.663 34 H 0.065 0.935 35 H 0.021 0.979 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.279 0.721 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.055 0.945 46 H 0.059 0.941 47 H 0.064 0.936 48 H 0.055 0.945 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.711 -14.019 12.003 19.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.290 6.290 3 C 0.300 3.700 4 O -0.364 6.364 5 C -0.141 4.141 6 C -0.005 4.005 7 H 0.096 0.904 8 N -0.304 5.304 9 C -0.001 4.001 10 C -0.208 4.208 11 C -0.113 4.113 12 C -0.189 4.189 13 C 0.114 3.886 14 C -0.501 4.501 15 H 0.095 0.905 16 C -0.136 4.136 17 N -0.415 5.415 18 Si 0.724 3.276 19 H -0.197 1.197 20 H -0.201 1.201 21 H -0.184 1.184 22 C -0.249 4.249 23 C -0.082 4.082 24 C -0.094 4.094 25 C -0.205 4.205 26 C -0.201 4.201 27 C -0.205 4.205 28 H 0.082 0.918 29 H 0.113 0.887 30 H 0.077 0.923 31 H 0.123 0.877 32 H 0.118 0.882 33 H 0.159 0.841 34 H 0.084 0.916 35 H 0.039 0.961 36 H 0.099 0.901 37 H 0.123 0.877 38 H 0.090 0.910 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.078 0.922 47 H 0.083 0.917 48 H 0.074 0.926 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.964 -13.745 11.997 19.194 hybrid contribution 0.519 0.829 -0.721 1.215 sum 6.484 -12.916 11.276 18.330 Atomic orbital electron populations 1.23161 0.76901 1.03018 1.02554 1.86476 1.23064 1.34444 1.84992 1.23653 0.92088 0.81163 0.73047 1.90701 1.66756 1.35906 1.43051 1.21608 0.87795 0.99805 1.04920 1.21389 0.91693 0.92692 0.94773 0.90359 1.60679 1.38919 1.21776 1.09000 1.20671 0.96987 0.86314 0.96088 1.18910 0.94732 1.08613 0.98564 1.20477 0.96701 0.98788 0.95345 1.21057 0.95667 1.04595 0.97546 1.17564 0.91033 0.88804 0.91173 1.19526 1.14110 1.10019 1.06472 0.90520 1.25861 0.93189 0.94922 0.99639 1.69874 1.25803 1.08852 1.36932 0.86453 0.78544 0.79421 0.83214 1.19662 1.20083 1.18395 1.20989 0.98024 1.09265 0.96591 1.20389 0.94278 0.97534 0.96020 1.21166 0.95812 0.96238 0.96161 1.21957 1.00292 1.00797 0.97407 1.21950 1.01151 1.00104 0.96867 1.21999 1.01044 0.94947 1.02476 0.91799 0.88702 0.92314 0.87726 0.88167 0.84091 0.91617 0.96096 0.90115 0.87694 0.90998 0.89317 0.89323 0.91865 0.92191 0.92557 0.92637 0.92622 0.92231 0.91725 0.92639 0.92610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.56 101.05 1.07 1.46 16 2 O -0.37 -4.68 10.57 -39.25 -0.41 -5.10 16 3 C 0.46 6.39 7.82 36.01 0.28 6.68 16 4 O -0.48 -8.34 14.70 -18.75 -0.28 -8.62 16 5 C -0.10 -1.11 4.79 -27.88 -0.13 -1.25 16 6 C 0.11 1.28 1.06 -67.71 -0.07 1.21 16 7 H 0.08 1.05 7.33 -51.93 -0.38 0.67 16 8 N -0.67 -10.41 5.17 -107.99 -0.56 -10.97 16 9 C 0.13 2.30 5.11 -4.98 -0.03 2.28 16 10 C -0.21 -4.62 5.47 -104.33 -0.57 -5.19 16 11 C -0.09 -2.21 9.67 -39.66 -0.38 -2.59 16 12 C -0.17 -4.48 8.71 -38.88 -0.34 -4.81 16 13 C 0.12 3.21 5.53 -106.83 -0.59 2.62 16 14 C -0.47 -12.94 9.01 -37.74 -0.34 -13.28 16 15 H 0.08 2.04 7.95 -52.49 -0.42 1.62 16 16 C 0.08 2.12 4.98 -17.34 -0.09 2.03 16 17 N -0.79 -20.94 11.47 55.55 0.64 -20.30 16 18 Si 0.90 19.04 29.62 -169.99 -5.03 14.01 16 19 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 20 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 21 H -0.26 -5.49 7.11 56.52 0.40 -5.08 16 22 C -0.23 -5.94 9.80 -38.87 -0.38 -6.33 16 23 C -0.06 -1.52 9.67 -39.66 -0.38 -1.91 16 24 C -0.09 -0.90 0.56 -154.51 -0.09 -0.98 16 25 C -0.15 -1.37 7.94 37.16 0.30 -1.07 16 26 C -0.14 -1.12 8.03 37.16 0.30 -0.82 16 27 C -0.15 -1.57 7.69 37.16 0.29 -1.29 16 28 H 0.06 0.74 8.13 -51.92 -0.42 0.31 16 29 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 31 H 0.10 1.06 6.79 -51.93 -0.35 0.71 16 32 H 0.10 0.82 6.08 -51.93 -0.32 0.51 16 33 H 0.34 5.13 5.71 -39.29 -0.22 4.91 16 34 H 0.07 1.27 7.57 -51.93 -0.39 0.87 16 35 H 0.02 0.36 5.74 -51.93 -0.30 0.06 16 36 H 0.08 1.70 8.06 -52.48 -0.42 1.28 16 37 H 0.11 2.85 6.54 -52.48 -0.34 2.51 16 38 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 39 H 0.09 2.20 8.06 -52.48 -0.42 1.78 16 40 H 0.09 2.05 8.06 -52.49 -0.42 1.62 16 41 H 0.06 0.68 6.08 -51.93 -0.32 0.36 16 42 H 0.06 0.50 6.64 -51.93 -0.35 0.16 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.06 0.40 6.25 -51.93 -0.32 0.08 16 47 H 0.06 0.81 5.67 -51.93 -0.29 0.52 16 48 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 385.16 15.07 5.80 5.80 Total: -1.00 -30.14 385.16 -8.79 -38.94 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -7.79 Total: 9.49 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: -1.16 Total: -23.25 kcal Atomic # 7 Polarization: -31.35 SS G_CDS: 0.08 Total: -31.27 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -0.69 Total: -13.72 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.01 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.14 -8.79 -38.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934033777.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.137 kcal (2) G-P(sol) polarization free energy of solvation -30.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds