Wall clock time and date at job start Tue Mar 31 2020 12:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34229 * 116.99660 * 2 1 4 4 O 1.20826 * 120.00517 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99800 * 179.97438 * 3 2 1 6 6 C 1.52999 * 109.47031 * 179.97438 * 5 3 2 7 7 H 1.09002 * 109.47131 * 55.01047 * 6 5 3 8 8 N 1.46902 * 109.47347 * 295.00272 * 6 5 3 9 9 C 1.46896 * 110.99611 * 139.21043 * 8 6 5 10 10 C 1.50703 * 109.47223 * 185.93169 * 9 8 6 11 11 C 1.38636 * 119.75257 * 269.73424 * 10 9 8 12 12 C 1.37613 * 120.24629 * 179.72003 * 11 10 9 13 13 C 1.40711 * 119.75029 * 0.56296 * 12 11 10 14 14 C 1.41391 * 120.24976 * 179.68526 * 13 12 11 15 15 H 1.08001 * 120.00160 * 153.42070 * 14 13 12 16 16 C 1.39953 * 119.99806 * 333.42294 * 14 13 12 17 17 N 1.30820 * 119.99523 * 336.51575 * 16 14 13 18 18 Si 1.86798 * 120.00083 * 156.51961 * 16 14 13 19 19 H 1.48502 * 109.47252 * 94.97989 * 18 16 14 20 20 H 1.48492 * 109.46934 * 214.98388 * 18 16 14 21 21 H 1.48501 * 109.46808 * 334.98296 * 18 16 14 22 22 C 1.40718 * 119.50684 * 359.71086 * 13 12 11 23 23 C 1.37617 * 119.74828 * 359.97438 * 22 13 12 24 24 C 1.53007 * 109.46788 * 175.00449 * 6 5 3 25 25 C 1.52998 * 109.47215 * 63.86909 * 24 6 5 26 26 C 1.52996 * 109.47192 * 303.86257 * 24 6 5 27 27 C 1.53001 * 109.46936 * 183.86711 * 24 6 5 28 28 H 1.09009 * 109.46984 * 60.00202 * 1 2 3 29 29 H 1.08998 * 109.46844 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47473 * 300.00497 * 1 2 3 31 31 H 1.09001 * 109.46824 * 60.00378 * 5 3 2 32 32 H 1.08998 * 109.47588 * 300.00285 * 5 3 2 33 33 H 1.00898 * 110.99713 * 263.16208 * 8 6 5 34 34 H 1.08994 * 109.47403 * 305.93579 * 9 8 6 35 35 H 1.09002 * 109.47227 * 65.93288 * 9 8 6 36 36 H 1.08003 * 119.87356 * 359.96800 * 11 10 9 37 37 H 1.08009 * 120.12491 * 180.27639 * 12 11 10 38 38 H 0.97007 * 119.99519 * 180.02562 * 17 16 14 39 39 H 1.08007 * 120.12803 * 179.97438 * 22 13 12 40 40 H 1.07998 * 119.87829 * 180.02562 * 23 22 13 41 41 H 1.09002 * 109.47446 * 60.00022 * 25 24 6 42 42 H 1.09000 * 109.47035 * 299.99546 * 25 24 6 43 43 H 1.08999 * 109.46599 * 180.02562 * 25 24 6 44 44 H 1.09001 * 109.47546 * 179.97438 * 26 24 6 45 45 H 1.08999 * 109.47579 * 300.00653 * 26 24 6 46 46 H 1.09007 * 109.46910 * 60.00108 * 26 24 6 47 47 H 1.08996 * 109.47304 * 302.72574 * 27 24 6 48 48 H 1.09003 * 109.47159 * 62.72856 * 27 24 6 49 49 H 1.09000 * 109.47582 * 182.72547 * 27 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0000 2.7422 -0.0002 7 1 3.5375 3.2582 0.8412 8 7 3.5780 3.3769 -1.2560 9 6 3.0657 4.7323 -1.0144 10 6 2.5096 5.2951 -2.2970 11 6 3.3353 6.0132 -3.1483 12 6 2.8395 6.5268 -4.3248 13 6 1.4862 6.3309 -4.6568 14 6 0.9642 6.8597 -5.8597 15 1 0.1138 6.3902 -6.3317 16 6 1.5496 7.9914 -6.4388 17 7 2.2390 8.8218 -5.6995 18 14 1.3463 8.3162 -8.2670 19 1 0.1999 9.2354 -8.4820 20 1 2.5853 8.9370 -8.8002 21 1 1.0918 7.0343 -8.9721 22 6 0.6561 5.6053 -3.7824 23 6 1.1749 5.0952 -2.6143 24 6 5.5227 2.8238 0.1260 25 6 6.1714 2.1841 -1.1031 26 6 5.9708 2.0791 1.3851 27 6 5.9485 4.2902 0.2223 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 3.9563 0.7807 -0.8892 32 1 3.9557 0.7810 0.8908 33 1 4.3323 3.3895 -1.9260 34 1 2.2776 4.6942 -0.2625 35 1 3.8760 5.3691 -0.6594 36 1 4.3724 6.1667 -2.8889 37 1 3.4856 7.0822 -4.9887 38 1 2.6444 9.6064 -6.1008 39 1 -0.3842 5.4493 -4.0271 40 1 0.5398 4.5377 -1.9419 41 1 5.8522 2.7147 -2.0001 42 1 5.8681 1.1394 -1.1716 43 1 7.2561 2.2419 -1.0129 44 1 7.0555 2.1368 1.4748 45 1 5.5086 2.5348 2.2608 46 1 5.6674 1.0343 1.3166 47 1 5.5873 4.8316 -0.6521 48 1 5.5255 4.7330 1.1241 49 1 7.0360 4.3509 0.2634 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934033777.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:48 Heat of formation + Delta-G solvation = -96.885372 kcal Electronic energy + Delta-G solvation = -27514.739406 eV Core-core repulsion = 23826.306942 eV Total energy + Delta-G solvation = -3688.432464 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.46590 -40.07420 -39.21182 -37.24436 -35.98271 -34.57293 -32.56387 -31.33399 -31.10227 -28.71600 -28.33323 -28.06177 -27.29496 -25.19653 -23.89882 -22.88289 -21.66391 -21.61966 -19.55142 -19.19794 -18.40422 -17.66482 -17.47222 -17.13853 -16.55872 -16.16880 -16.06612 -15.61346 -15.35441 -14.96931 -14.83090 -14.59682 -14.23702 -14.02972 -13.98972 -13.81418 -13.67961 -13.44306 -13.22877 -12.92605 -12.89772 -12.78558 -12.77034 -12.59766 -12.39276 -12.34222 -12.20924 -12.08411 -11.76913 -11.66659 -11.53568 -11.41942 -11.33001 -11.23270 -11.11698 -10.95391 -9.36834 -9.23033 -9.04701 -8.68038 -6.30953 0.96702 1.15054 1.36721 1.45953 1.47112 1.54324 1.94566 2.20930 2.68001 3.41093 3.71547 3.77134 3.83522 3.99285 4.11649 4.30079 4.35153 4.36813 4.37467 4.42421 4.44528 4.57136 4.64572 4.66791 4.68236 4.75211 4.78957 4.84676 4.92095 4.94209 4.99147 5.03013 5.10254 5.14452 5.18176 5.21335 5.34821 5.37440 5.47186 5.48386 5.53827 5.61858 5.72474 5.97386 6.09213 6.24603 6.32209 6.41583 6.68566 6.70649 6.94481 6.99649 7.05008 8.32115 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014561 B = 0.003244 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.534714 B = 8630.033628 C = 9974.871129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.371 6.371 3 C 0.455 3.545 4 O -0.523 6.523 5 C -0.098 4.098 6 C 0.108 3.892 7 H 0.064 0.936 8 N -0.680 5.680 9 C 0.141 3.859 10 C -0.193 4.193 11 C -0.092 4.092 12 C -0.189 4.189 13 C 0.086 3.914 14 C -0.513 4.513 15 H 0.071 0.929 16 C 0.043 3.957 17 N -0.822 5.822 18 Si 0.977 3.023 19 H -0.262 1.262 20 H -0.263 1.263 21 H -0.260 1.260 22 C -0.248 4.248 23 C -0.070 4.070 24 C -0.084 4.084 25 C -0.147 4.147 26 C -0.140 4.140 27 C -0.148 4.148 28 H 0.046 0.954 29 H 0.130 0.870 30 H 0.058 0.942 31 H 0.117 0.883 32 H 0.135 0.865 33 H 0.340 0.660 34 H 0.054 0.946 35 H 0.035 0.965 36 H 0.107 0.893 37 H 0.091 0.909 38 H 0.289 0.711 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.045 0.955 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.055 0.945 46 H 0.075 0.925 47 H 0.042 0.958 48 H 0.052 0.948 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.477 -15.656 12.751 21.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.289 6.289 3 C 0.299 3.701 4 O -0.411 6.411 5 C -0.136 4.136 6 C -0.003 4.003 7 H 0.083 0.917 8 N -0.313 5.313 9 C 0.012 3.988 10 C -0.195 4.195 11 C -0.111 4.111 12 C -0.208 4.208 13 C 0.084 3.916 14 C -0.542 4.542 15 H 0.089 0.911 16 C -0.173 4.173 17 N -0.447 5.447 18 Si 0.797 3.203 19 H -0.187 1.187 20 H -0.187 1.187 21 H -0.184 1.184 22 C -0.267 4.267 23 C -0.088 4.088 24 C -0.085 4.085 25 C -0.204 4.204 26 C -0.198 4.198 27 C -0.205 4.205 28 H 0.065 0.935 29 H 0.148 0.852 30 H 0.077 0.923 31 H 0.135 0.865 32 H 0.153 0.847 33 H 0.162 0.838 34 H 0.072 0.928 35 H 0.053 0.947 36 H 0.125 0.875 37 H 0.109 0.891 38 H 0.099 0.901 39 H 0.106 0.894 40 H 0.113 0.887 41 H 0.064 0.936 42 H 0.091 0.909 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.074 0.926 46 H 0.093 0.907 47 H 0.061 0.939 48 H 0.071 0.929 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.739 -15.413 12.768 21.459 hybrid contribution -0.035 1.251 -0.795 1.482 sum 7.704 -14.162 11.973 20.082 Atomic orbital electron populations 1.23373 0.75891 1.05095 1.01751 1.86478 1.24133 1.33761 1.84502 1.24318 0.93273 0.80849 0.71685 1.90692 1.67880 1.37260 1.45239 1.21711 0.85719 0.99077 1.07089 1.21424 0.93431 0.93013 0.92387 0.91740 1.60536 1.39709 1.19955 1.11075 1.20443 0.97037 0.88090 0.93197 1.19353 0.93951 1.06699 0.99485 1.20721 0.98095 0.97910 0.94367 1.21054 0.95296 1.05702 0.98755 1.17878 0.91880 0.89864 0.91980 1.19750 1.15306 1.11512 1.07619 0.91096 1.26703 0.92382 0.93908 1.04311 1.69904 1.26400 1.09398 1.39032 0.85287 0.79117 0.79243 0.76616 1.18668 1.18706 1.18420 1.21136 0.98119 1.10048 0.97425 1.20550 0.95294 0.97501 0.95496 1.21080 0.93733 0.96050 0.97669 1.21959 1.01031 1.01203 0.96195 1.21934 1.01855 1.00583 0.95423 1.22001 1.01878 0.95396 1.01249 0.93491 0.85206 0.92289 0.86482 0.84720 0.83819 0.92757 0.94738 0.87494 0.89071 0.90059 0.89439 0.88656 0.93624 0.90883 0.91325 0.91582 0.92637 0.90662 0.93925 0.92885 0.91266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 10.56 113.37 1.20 1.84 16 2 O -0.37 -8.76 10.57 -51.41 -0.54 -9.30 16 3 C 0.46 12.11 7.82 71.24 0.56 12.67 16 4 O -0.52 -18.17 14.70 21.96 0.32 -17.85 16 5 C -0.10 -1.87 4.79 29.85 0.14 -1.72 16 6 C 0.11 2.41 1.06 44.92 0.05 2.46 16 7 H 0.06 1.65 7.33 -2.39 -0.02 1.63 16 8 N -0.68 -20.46 5.17 -495.57 -2.56 -23.02 16 9 C 0.14 5.05 5.11 85.56 0.44 5.49 16 10 C -0.19 -8.71 5.47 -19.67 -0.11 -8.82 16 11 C -0.09 -4.36 9.67 22.22 0.21 -4.15 16 12 C -0.19 -10.29 8.71 22.73 0.20 -10.09 16 13 C 0.09 4.95 5.53 -21.29 -0.12 4.83 16 14 C -0.51 -29.28 9.01 23.46 0.21 -29.07 16 15 H 0.07 3.96 7.95 -2.91 -0.02 3.94 16 16 C 0.04 2.24 4.98 85.26 0.42 2.67 16 17 N -0.82 -44.53 11.47 21.83 0.25 -44.28 16 18 Si 0.98 39.53 29.62 68.60 2.03 41.56 16 19 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 20 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 21 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 22 C -0.25 -13.41 9.80 22.73 0.22 -13.18 16 23 C -0.07 -3.43 9.67 22.22 0.21 -3.22 16 24 C -0.08 -1.41 0.56 -52.18 -0.03 -1.44 16 25 C -0.15 -2.31 7.94 71.98 0.57 -1.73 16 26 C -0.14 -1.67 8.03 71.98 0.58 -1.10 16 27 C -0.15 -2.87 7.69 71.98 0.55 -2.32 16 28 H 0.05 1.09 8.13 -2.38 -0.02 1.07 16 29 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.06 1.16 8.13 -2.39 -0.02 1.14 16 31 H 0.12 2.00 6.79 -2.39 -0.02 1.99 16 32 H 0.14 1.66 6.08 -2.39 -0.01 1.64 16 33 H 0.34 9.97 5.71 -89.70 -0.51 9.46 16 34 H 0.05 2.10 7.57 -2.39 -0.02 2.08 16 35 H 0.03 1.15 5.74 -2.39 -0.01 1.14 16 36 H 0.11 4.43 8.06 -2.91 -0.02 4.40 16 37 H 0.09 5.14 6.54 -2.91 -0.02 5.12 16 38 H 0.29 14.03 8.30 -92.70 -0.77 13.26 16 39 H 0.09 4.59 8.06 -2.91 -0.02 4.56 16 40 H 0.10 4.51 8.06 -2.91 -0.02 4.49 16 41 H 0.04 0.89 6.08 -2.39 -0.01 0.88 16 42 H 0.07 0.96 6.64 -2.39 -0.02 0.94 16 43 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.07 0.67 6.25 -2.38 -0.01 0.66 16 47 H 0.04 1.01 5.67 -2.39 -0.01 0.99 16 48 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 49 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -68.10 385.16 5.25 -62.85 By element: Atomic # 1 Polarization: 36.48 SS G_CDS: 0.43 Total: 36.91 kcal Atomic # 6 Polarization: -52.20 SS G_CDS: 5.32 Total: -46.89 kcal Atomic # 7 Polarization: -64.99 SS G_CDS: -2.31 Total: -67.30 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -0.22 Total: -27.15 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 2.03 Total: 41.56 kcal Total: -68.10 5.25 -62.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934033777.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.031 kcal (2) G-P(sol) polarization free energy of solvation -68.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds