Wall clock time and date at job start Tue Mar 31 2020 12:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46574 * 2 1 4 4 C 1.53007 * 109.47038 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47193 * 175.30532 * 4 3 2 6 6 H 1.08998 * 109.46827 * 55.77625 * 5 4 3 7 7 C 1.52994 * 109.47212 * 295.77680 * 5 4 3 8 8 C 1.53003 * 109.47289 * 304.61932 * 7 5 4 9 9 C 1.52996 * 109.47032 * 175.77428 * 5 4 3 10 10 C 1.50700 * 109.46978 * 185.00177 * 9 5 4 11 11 O 1.21289 * 120.00442 * 0.02562 * 10 9 5 12 12 N 1.34777 * 119.99917 * 179.97438 * 10 9 5 13 13 C 1.39992 * 120.00125 * 185.06322 * 12 10 9 14 14 C 1.38923 * 120.00584 * 214.03754 * 13 12 10 15 15 C 1.37994 * 120.00049 * 179.79053 * 14 13 12 16 16 C 1.38914 * 120.00201 * 0.47123 * 15 14 13 17 17 O 1.35773 * 120.00032 * 179.76354 * 16 15 14 18 18 C 1.34814 * 117.00097 * 185.93987 * 17 16 15 19 19 H 1.08003 * 119.99898 * 5.43695 * 18 17 16 20 20 C 1.38633 * 119.99978 * 185.44325 * 18 17 16 21 21 N 1.31573 * 120.00283 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99827 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47291 * 60.00054 * 22 20 18 24 24 H 1.48501 * 109.47021 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47139 * 300.00001 * 22 20 18 26 26 C 1.38911 * 120.00038 * 359.78756 * 16 15 14 27 27 C 1.38003 * 120.00058 * 359.97438 * 26 16 15 28 28 H 1.08997 * 109.47385 * 59.99972 * 1 2 3 29 29 H 1.09006 * 109.46408 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47058 * 299.99547 * 1 2 3 31 31 H 1.09002 * 109.47507 * 240.00705 * 2 1 3 32 32 H 1.08997 * 109.47385 * 120.00028 * 2 1 3 33 33 H 1.08999 * 109.47058 * 60.00453 * 3 2 1 34 34 H 1.08997 * 109.47287 * 300.00088 * 3 2 1 35 35 H 1.09007 * 109.46466 * 55.30729 * 4 3 2 36 36 H 1.09000 * 109.47151 * 295.30799 * 4 3 2 37 37 H 1.09000 * 109.47051 * 184.62379 * 7 5 4 38 38 H 1.08996 * 109.47384 * 64.62207 * 7 5 4 39 39 H 1.09000 * 109.47617 * 175.42671 * 8 7 5 40 40 H 1.09004 * 109.47078 * 55.42253 * 8 7 5 41 41 H 1.09005 * 109.46951 * 295.42792 * 8 7 5 42 42 H 1.09007 * 109.47110 * 305.00147 * 9 5 4 43 43 H 1.09000 * 109.47304 * 65.00135 * 9 5 4 44 44 H 0.97007 * 120.00128 * 5.07393 * 12 10 9 45 45 H 1.08007 * 119.99544 * 0.03454 * 14 13 12 46 46 H 1.07998 * 120.00426 * 180.23785 * 15 14 13 47 47 H 0.96992 * 120.00106 * 179.97438 * 21 20 18 48 48 H 1.08002 * 119.99926 * 179.97438 * 26 16 15 49 49 H 1.08004 * 120.00051 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4427 0.0006 5 6 4.0799 2.8804 -0.1174 6 1 3.6557 3.4834 0.6854 7 6 3.6590 3.4615 -1.4687 8 6 4.1574 2.5511 -2.5929 9 6 5.6061 2.8905 -0.0109 10 6 6.0997 4.3143 -0.0038 11 8 5.3087 5.2309 -0.0762 12 7 7.4202 4.5693 0.0841 13 6 7.8722 5.8894 0.1976 14 6 9.0744 6.2650 -0.3885 15 6 9.5177 7.5673 -0.2802 16 6 8.7667 8.5004 0.4232 17 8 9.2052 9.7806 0.5338 18 6 8.4949 10.6043 1.3304 19 1 7.6733 10.2155 1.9137 20 6 8.8190 11.9504 1.4006 21 7 9.8195 12.4242 0.6896 22 14 7.8343 13.0917 2.5038 23 1 7.9309 12.6256 3.9105 24 1 8.3771 14.4701 2.4003 25 1 6.4119 13.0870 2.0773 26 6 7.5672 8.1237 1.0139 27 6 7.1214 6.8225 0.9015 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3632 -1.0278 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6766 1.9564 0.8900 34 1 1.6765 1.9564 -0.8899 35 1 3.9336 0.8577 -0.8442 36 1 3.9329 1.0036 0.9299 37 1 4.0912 4.4551 -1.5874 38 1 2.5721 3.5305 -1.5119 39 1 3.7890 2.9204 -3.5499 40 1 3.7909 1.5376 -2.4291 41 1 5.2474 2.5465 -2.6004 42 1 5.9092 2.3962 0.9121 43 1 6.0333 2.3621 -0.8632 44 1 8.0575 3.8381 0.0686 45 1 9.6602 5.5385 -0.9323 46 1 10.4504 7.8602 -0.7391 47 1 10.0460 13.3660 0.7384 48 1 6.9835 8.8492 1.5611 49 1 6.1890 6.5295 1.3611 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116086264.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:59 Heat of formation + Delta-G solvation = -88.784216 kcal Electronic energy + Delta-G solvation = -26133.866199 eV Core-core repulsion = 22445.785028 eV Total energy + Delta-G solvation = -3688.081171 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.56619 -40.47151 -38.80989 -37.81192 -35.37857 -35.13510 -34.17349 -31.88086 -31.28299 -30.58190 -29.13594 -27.30767 -26.00125 -24.50678 -23.98301 -23.15669 -21.99341 -21.19194 -20.10965 -19.75666 -19.07630 -17.98372 -17.86460 -17.02502 -16.64687 -16.29939 -16.11926 -15.60429 -15.47655 -15.30209 -15.14093 -15.04633 -14.62814 -14.48050 -14.14542 -13.81573 -13.59284 -13.52516 -13.35447 -13.23451 -13.18680 -13.02266 -12.80477 -12.66017 -12.48988 -12.17574 -12.16015 -12.04204 -11.69750 -11.46200 -11.41750 -11.31095 -11.23857 -11.12430 -11.06895 -10.67469 -10.40783 -9.84513 -8.58610 -8.47828 -6.14445 0.50999 0.55245 1.33629 1.43189 1.49502 1.75353 2.16687 2.23034 2.81839 3.15175 3.50438 3.72855 3.77777 3.97456 4.06039 4.10160 4.18233 4.21941 4.30457 4.39741 4.47636 4.55314 4.60376 4.63700 4.67334 4.69126 4.74386 4.80419 4.91582 4.96132 4.98865 5.06793 5.10151 5.12832 5.17182 5.20715 5.26212 5.32420 5.34090 5.37600 5.45524 5.47649 5.51389 5.57250 5.63597 5.69757 5.73850 6.00947 6.17924 6.62663 6.96734 7.34670 7.76440 8.74839 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.021008 B = 0.002166 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.489293 B =12921.171864 C =13764.992557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.122 4.122 3 C -0.122 4.122 4 C -0.110 4.110 5 C -0.069 4.069 6 H 0.053 0.947 7 C -0.127 4.127 8 C -0.152 4.152 9 C -0.127 4.127 10 C 0.500 3.500 11 O -0.565 6.565 12 N -0.654 5.654 13 C 0.067 3.933 14 C -0.081 4.081 15 C -0.180 4.180 16 C 0.104 3.896 17 O -0.228 6.228 18 C -0.414 4.414 19 H 0.096 0.904 20 C -0.021 4.021 21 N -0.917 5.917 22 Si 1.016 2.984 23 H -0.257 1.257 24 H -0.268 1.268 25 H -0.262 1.262 26 C -0.228 4.228 27 C -0.077 4.077 28 H 0.050 0.950 29 H 0.058 0.942 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.046 0.954 38 H 0.056 0.944 39 H 0.045 0.955 40 H 0.076 0.924 41 H 0.056 0.944 42 H 0.122 0.878 43 H 0.122 0.878 44 H 0.426 0.574 45 H 0.166 0.834 46 H 0.128 0.872 47 H 0.273 0.727 48 H 0.115 0.885 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.678 -28.570 -1.825 30.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.159 4.159 3 C -0.160 4.160 4 C -0.147 4.147 5 C -0.088 4.088 6 H 0.071 0.929 7 C -0.165 4.165 8 C -0.209 4.209 9 C -0.166 4.166 10 C 0.290 3.710 11 O -0.444 6.444 12 N -0.301 5.301 13 C -0.027 4.027 14 C -0.101 4.101 15 C -0.199 4.199 16 C 0.053 3.947 17 O -0.135 6.135 18 C -0.490 4.490 19 H 0.113 0.887 20 C -0.219 4.219 21 N -0.555 5.555 22 Si 0.835 3.165 23 H -0.181 1.181 24 H -0.193 1.193 25 H -0.186 1.186 26 C -0.248 4.248 27 C -0.097 4.097 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.094 0.906 41 H 0.075 0.925 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.264 0.736 45 H 0.184 0.816 46 H 0.146 0.854 47 H 0.082 0.918 48 H 0.133 0.867 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.966 -27.679 -2.004 30.221 hybrid contribution -0.118 1.092 0.439 1.183 sum -12.083 -26.586 -1.565 29.245 Atomic orbital electron populations 1.21802 0.96213 1.01776 1.01537 1.21520 0.95649 0.96419 1.02345 1.21652 0.95742 0.97006 1.01597 1.21683 0.95233 0.94613 1.03168 1.20869 0.93094 0.97317 0.97493 0.92887 1.21624 1.00530 0.99308 0.95017 1.21893 1.01234 1.00339 0.97395 1.21854 0.97297 0.90597 1.06879 1.21691 0.81434 0.93325 0.74514 1.90707 1.55584 1.48667 1.49400 1.43322 1.08269 1.05887 1.72672 1.17408 0.96546 0.86128 1.02647 1.20798 0.95884 0.94865 0.98513 1.20334 1.01729 0.92531 1.05343 1.19940 0.93264 0.85974 0.95515 1.83942 1.50899 1.16996 1.61618 1.21699 1.15409 0.89963 1.21904 0.88682 1.26531 0.98101 0.97727 0.99507 1.70167 1.28766 1.15502 1.41093 0.84693 0.77700 0.76377 0.77734 1.18140 1.19257 1.18619 1.21081 0.98177 0.97657 1.07875 1.20770 0.99314 0.92154 0.97441 0.93077 0.92250 0.93189 0.91478 0.91709 0.93106 0.92343 0.89926 0.90880 0.93573 0.92568 0.93623 0.90572 0.92476 0.86043 0.85962 0.73566 0.81616 0.85407 0.91780 0.86730 0.86160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.91 71.98 0.71 -0.92 16 2 C -0.12 -1.22 5.93 30.60 0.18 -1.04 16 3 C -0.12 -1.51 5.06 30.60 0.15 -1.35 16 4 C -0.11 -1.18 4.36 30.60 0.13 -1.04 16 5 C -0.07 -1.12 1.82 -10.80 -0.02 -1.14 16 6 H 0.05 1.14 7.95 -2.39 -0.02 1.12 16 7 C -0.13 -2.50 5.12 30.59 0.16 -2.34 16 8 C -0.15 -2.20 9.23 71.98 0.66 -1.54 16 9 C -0.13 -1.73 5.04 29.85 0.15 -1.58 16 10 C 0.50 12.13 7.24 87.66 0.64 12.76 16 11 O -0.57 -19.51 11.73 -3.06 -0.04 -19.54 16 12 N -0.65 -14.92 5.34 -303.38 -1.62 -16.54 16 13 C 0.07 2.20 6.26 38.17 0.24 2.44 16 14 C -0.08 -2.59 9.96 22.38 0.22 -2.37 16 15 C -0.18 -7.50 9.98 22.37 0.22 -7.28 16 16 C 0.10 5.31 6.65 22.59 0.15 5.46 16 17 O -0.23 -13.98 9.75 -22.83 -0.22 -14.21 16 18 C -0.41 -24.84 9.44 67.91 0.64 -24.20 16 19 H 0.10 5.35 5.29 -2.91 -0.02 5.33 16 20 C -0.02 -1.22 5.49 84.83 0.47 -0.75 16 21 N -0.92 -56.95 13.67 21.61 0.30 -56.66 16 22 Si 1.02 44.18 29.55 68.60 2.03 46.21 16 23 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 24 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 25 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 26 C -0.23 -10.86 9.13 22.38 0.20 -10.65 16 27 C -0.08 -3.10 8.65 22.38 0.19 -2.91 16 28 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.05 0.72 8.14 -2.39 -0.02 0.71 16 34 H 0.06 0.81 6.43 -2.39 -0.02 0.80 16 35 H 0.08 0.68 6.01 -2.38 -0.01 0.67 16 36 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.05 1.27 5.88 -2.39 -0.01 1.25 16 38 H 0.06 1.11 6.67 -2.39 -0.02 1.09 16 39 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.08 0.82 6.00 -2.38 -0.01 0.80 16 41 H 0.06 0.76 6.67 -2.38 -0.02 0.74 16 42 H 0.12 1.04 8.14 -2.38 -0.02 1.02 16 43 H 0.12 1.06 6.43 -2.39 -0.02 1.04 16 44 H 0.43 5.71 8.82 -92.70 -0.82 4.89 16 45 H 0.17 3.66 8.06 -2.91 -0.02 3.64 16 46 H 0.13 5.08 8.06 -2.91 -0.02 5.06 16 47 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 48 H 0.11 5.65 5.71 -2.91 -0.02 5.64 16 49 H 0.12 4.82 6.48 -2.91 -0.02 4.80 16 Total: -1.00 -77.83 386.68 5.69 -72.14 By element: Atomic # 1 Polarization: 26.91 SS G_CDS: 0.14 Total: 27.05 kcal Atomic # 6 Polarization: -43.56 SS G_CDS: 5.11 Total: -38.45 kcal Atomic # 7 Polarization: -71.87 SS G_CDS: -1.32 Total: -73.19 kcal Atomic # 8 Polarization: -33.49 SS G_CDS: -0.26 Total: -33.75 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -77.83 5.69 -72.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116086264.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.643 kcal (2) G-P(sol) polarization free energy of solvation -77.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds