Wall clock time and date at job start Tue Mar 31 2020 12:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47517 * 2 1 4 4 C 1.53003 * 109.47298 * 239.99709 * 2 1 3 5 5 C 1.53009 * 109.47221 * 119.99969 * 2 1 3 6 6 N 1.46493 * 109.46823 * 54.26021 * 5 2 1 7 7 C 1.46494 * 120.00245 * 275.81275 * 6 5 2 8 8 C 1.50699 * 109.47248 * 270.00353 * 7 6 5 9 9 H 1.07998 * 119.99847 * 359.97438 * 8 7 6 10 10 C 1.37876 * 120.00283 * 180.02562 * 8 7 6 11 11 N 1.31517 * 120.00255 * 179.97438 * 10 8 7 12 12 Si 1.86805 * 119.99860 * 359.97438 * 10 8 7 13 13 H 1.48493 * 109.47061 * 90.00457 * 12 10 8 14 14 H 1.48497 * 109.46835 * 210.00137 * 12 10 8 15 15 H 1.48497 * 109.47231 * 330.00104 * 12 10 8 16 16 C 1.34779 * 119.99829 * 95.81237 * 6 5 2 17 17 O 1.21287 * 120.00189 * 185.43941 * 16 6 5 18 18 C 1.50697 * 120.00192 * 5.44520 * 16 6 5 19 19 C 1.53001 * 109.47424 * 174.42083 * 18 16 6 20 20 C 1.50697 * 109.47044 * 180.02562 * 19 18 16 21 21 C 1.38291 * 119.97186 * 270.02076 * 20 19 18 22 22 C 1.38246 * 120.11353 * 180.02562 * 21 20 19 23 23 C 1.38168 * 120.05388 * 359.67292 * 22 21 20 24 24 C 1.38714 * 119.94144 * 0.57737 * 23 22 21 25 25 O 1.35899 * 120.05004 * 179.71969 * 24 23 22 26 26 C 1.38129 * 119.97425 * 90.00055 * 20 19 18 27 27 H 1.08998 * 109.47340 * 300.00689 * 1 2 3 28 28 H 1.08998 * 109.47251 * 60.00075 * 1 2 3 29 29 H 1.08997 * 109.47291 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47583 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.46799 * 300.00201 * 3 2 1 32 32 H 1.08999 * 109.46647 * 59.99443 * 3 2 1 33 33 H 1.08998 * 109.47314 * 304.13441 * 4 2 1 34 34 H 1.09001 * 109.46802 * 64.13247 * 4 2 1 35 35 H 1.09000 * 109.47032 * 184.12714 * 4 2 1 36 36 H 1.08993 * 109.46482 * 294.26274 * 5 2 1 37 37 H 1.08996 * 109.46598 * 174.26473 * 5 2 1 38 38 H 1.09000 * 109.47433 * 30.00389 * 7 6 5 39 39 H 1.08998 * 109.47356 * 150.00242 * 7 6 5 40 40 H 0.97002 * 119.99932 * 179.97438 * 11 10 8 41 41 H 1.08999 * 109.47419 * 54.41363 * 18 16 6 42 42 H 1.08999 * 109.46938 * 294.42483 * 18 16 6 43 43 H 1.08994 * 109.46973 * 59.99429 * 19 18 16 44 44 H 1.09000 * 109.46952 * 299.99486 * 19 18 16 45 45 H 1.07997 * 119.93958 * 359.97438 * 21 20 19 46 46 H 1.07998 * 119.97072 * 179.97438 * 22 21 20 47 47 H 1.07997 * 120.02491 * 180.29872 * 23 22 21 48 48 H 0.96706 * 113.99912 * 269.72396 * 25 24 23 49 49 H 1.07996 * 120.02817 * 0.02562 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2493 6 7 1.4421 -2.0568 1.3203 7 6 0.1134 -2.2340 1.9111 8 6 0.2513 -2.4926 3.3893 9 1 1.2308 -2.5224 3.8432 10 6 -0.8730 -2.6923 4.1621 11 7 -0.7526 -2.9184 5.4521 12 14 -2.5672 -2.6415 3.3769 13 1 -2.9424 -4.0039 2.9208 14 1 -3.5597 -2.1618 4.3719 15 1 -2.5463 -1.7184 2.2139 16 6 2.1146 -3.1224 0.8421 17 8 1.5817 -4.2115 0.8102 18 6 3.5287 -2.9609 0.3470 19 6 4.1049 -4.3332 -0.0076 20 6 5.5193 -4.1716 -0.5021 21 6 5.7621 -3.9777 -1.8496 22 6 7.0585 -3.8296 -2.3064 23 6 8.1145 -3.8684 -1.4163 24 6 7.8739 -4.0681 -0.0648 25 8 8.9114 -4.1123 0.8118 26 6 6.5720 -4.2170 0.3911 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6174 -1.7254 -1.2870 34 1 1.7383 -0.1665 -2.1377 35 1 3.1275 -0.7858 -1.2130 36 1 1.7629 -0.1515 2.1362 37 1 3.1251 -0.8110 1.1993 38 1 -0.4776 -1.3318 1.7537 39 1 -0.3842 -3.0811 1.4390 40 1 -1.5436 -3.0585 5.9958 41 1 4.1366 -2.5021 1.1269 42 1 3.5334 -2.3250 -0.5382 43 1 3.4971 -4.7919 -0.7874 44 1 4.1004 -4.9690 0.8777 45 1 4.9377 -3.9426 -2.5463 46 1 7.2456 -3.6787 -3.3593 47 1 9.1267 -3.7479 -1.7731 48 1 9.2713 -4.9990 0.9509 49 1 6.3818 -4.3685 1.4433 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123645592.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:17 Heat of formation + Delta-G solvation = -67.786321 kcal Electronic energy + Delta-G solvation = -27608.609325 eV Core-core repulsion = 23921.438691 eV Total energy + Delta-G solvation = -3687.170634 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.06088 -39.52020 -37.30056 -36.92020 -34.12187 -33.53438 -32.33910 -30.40025 -29.72125 -28.26390 -27.23198 -26.96618 -25.66607 -24.55901 -22.71886 -22.12624 -21.01044 -19.32394 -18.17137 -17.87215 -17.02029 -16.61155 -16.29368 -16.05031 -15.43970 -15.31304 -15.19036 -14.32717 -14.10192 -13.98485 -13.85855 -13.74745 -13.22076 -13.01440 -12.72201 -12.59416 -12.37841 -12.36361 -12.03839 -11.88466 -11.82317 -11.60100 -11.51763 -11.39421 -11.38248 -11.04292 -10.84560 -10.68348 -10.60178 -10.51562 -10.45860 -10.26093 -10.02647 -9.49291 -9.08912 -8.90446 -8.67412 -8.56637 -7.63382 -6.07561 -4.05555 1.09333 1.18292 3.29178 3.35086 3.36961 3.37124 3.45735 3.85935 4.05423 4.40347 4.66209 4.74000 4.94585 4.95261 4.96608 5.06299 5.18149 5.22616 5.23361 5.26505 5.37922 5.44181 5.57382 5.62623 5.65921 5.70578 5.75389 5.85312 5.87627 5.93741 6.02407 6.06386 6.11654 6.14461 6.23645 6.25348 6.27102 6.30206 6.33992 6.50085 6.53901 6.60197 6.68678 6.78782 6.98786 7.39847 7.47068 7.64566 8.30167 8.49261 8.94684 9.02312 9.53320 11.05942 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.013759 B = 0.003520 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.612970 B = 7952.765248 C = 9012.153216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 C -0.137 4.137 4 C -0.144 4.144 5 C 0.119 3.881 6 N -0.588 5.588 7 C 0.208 3.792 8 C -0.528 4.528 9 H 0.073 0.927 10 C 0.072 3.928 11 N -0.898 5.898 12 Si 0.874 3.126 13 H -0.274 1.274 14 H -0.285 1.285 15 H -0.265 1.265 16 C 0.511 3.489 17 O -0.546 6.546 18 C -0.144 4.144 19 C -0.068 4.068 20 C -0.056 4.056 21 C -0.126 4.126 22 C -0.103 4.103 23 C -0.155 4.155 24 C 0.104 3.896 25 O -0.501 6.501 26 C -0.141 4.141 27 H 0.058 0.942 28 H 0.046 0.954 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.056 0.944 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.040 0.960 39 H 0.034 0.966 40 H 0.264 0.736 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.125 0.875 46 H 0.125 0.875 47 H 0.124 0.876 48 H 0.389 0.611 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.657 3.287 -16.150 22.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.088 4.088 3 C -0.195 4.195 4 C -0.201 4.201 5 C -0.005 4.005 6 N -0.318 5.318 7 C 0.088 3.912 8 C -0.567 4.567 9 H 0.091 0.909 10 C -0.130 4.130 11 N -0.537 5.537 12 Si 0.701 3.299 13 H -0.200 1.200 14 H -0.211 1.211 15 H -0.190 1.190 16 C 0.298 3.702 17 O -0.424 6.424 18 C -0.184 4.184 19 C -0.105 4.105 20 C -0.057 4.057 21 C -0.144 4.144 22 C -0.121 4.121 23 C -0.173 4.173 24 C 0.060 3.940 25 O -0.311 6.311 26 C -0.160 4.160 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.058 0.942 39 H 0.052 0.948 40 H 0.074 0.926 41 H 0.106 0.894 42 H 0.114 0.886 43 H 0.101 0.899 44 H 0.099 0.901 45 H 0.143 0.857 46 H 0.143 0.857 47 H 0.142 0.858 48 H 0.245 0.755 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 14.147 3.283 -15.937 21.562 hybrid contribution -0.735 -0.391 -0.104 0.839 sum 13.412 2.892 -16.041 21.108 Atomic orbital electron populations 1.22062 0.94276 1.02824 1.01076 1.21000 0.96650 0.95315 0.95861 1.21803 1.00706 0.95180 1.01824 1.22031 1.00354 1.00701 0.96978 1.21577 0.97238 0.84289 0.97416 1.47810 1.19770 1.05785 1.58442 1.19851 0.79760 0.97438 0.94164 1.21373 0.95249 1.49115 0.90921 0.90864 1.24845 0.98925 0.94524 0.94686 1.69901 1.29733 1.48881 1.05197 0.86885 0.84526 0.79114 0.79412 1.19964 1.21127 1.18968 1.20307 0.87554 0.84381 0.77973 1.90656 1.69779 1.25730 1.56213 1.21924 0.94755 0.98685 1.02996 1.20386 0.90471 0.96943 1.02738 1.19914 0.95451 0.97144 0.93152 1.21133 0.96956 1.01057 0.95271 1.21007 0.92327 0.99360 0.99431 1.21370 0.99837 1.03608 0.92509 1.18475 0.86908 1.00327 0.88278 1.84829 1.48601 1.34274 1.63369 1.21419 0.91694 1.02270 1.00592 0.92262 0.93531 0.91416 0.92744 0.92773 0.92354 0.92420 0.92911 0.92556 0.89984 0.91078 0.94192 0.94763 0.92622 0.89441 0.88576 0.89937 0.90062 0.85685 0.85738 0.85761 0.75526 0.85224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 6.98 37.15 0.26 -1.87 16 2 C -0.09 -1.14 0.85 -154.50 -0.13 -1.27 16 3 C -0.14 -1.47 8.47 37.16 0.31 -1.15 16 4 C -0.14 -1.71 6.84 37.16 0.25 -1.45 16 5 C 0.12 1.87 4.58 -4.04 -0.02 1.85 16 6 N -0.59 -11.69 2.00 -175.07 -0.35 -12.04 16 7 C 0.21 4.99 3.00 -5.20 -0.02 4.97 16 8 C -0.53 -15.07 9.94 -34.44 -0.34 -15.41 16 9 H 0.07 2.30 8.06 -52.49 -0.42 1.87 16 10 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 11 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 12 Si 0.87 21.57 27.47 -169.99 -4.67 16.90 16 13 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 15 H -0.26 -6.11 6.54 56.52 0.37 -5.74 16 16 C 0.51 10.06 6.40 -10.99 -0.07 9.99 16 17 O -0.55 -13.03 15.54 5.55 0.09 -12.94 16 18 C -0.14 -2.08 4.04 -27.88 -0.11 -2.19 16 19 C -0.07 -0.92 4.65 -27.88 -0.13 -1.05 16 20 C -0.06 -0.66 5.13 -104.64 -0.54 -1.20 16 21 C -0.13 -1.29 9.70 -39.56 -0.38 -1.68 16 22 C -0.10 -0.95 10.04 -39.60 -0.40 -1.34 16 23 C -0.15 -1.50 9.99 -39.43 -0.39 -1.89 16 24 C 0.10 1.14 6.70 -39.22 -0.26 0.87 16 25 O -0.50 -4.96 13.50 -19.42 -0.26 -5.22 16 26 C -0.14 -1.66 9.64 -39.43 -0.38 -2.04 16 27 H 0.06 0.90 7.72 -51.93 -0.40 0.50 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.07 1.16 5.76 -51.93 -0.30 0.86 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.79 6.74 -51.93 -0.35 0.44 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.59 6.49 -51.93 -0.34 0.26 16 36 H 0.08 1.38 8.11 -51.93 -0.42 0.96 16 37 H 0.07 0.96 6.11 -51.93 -0.32 0.65 16 38 H 0.04 0.91 4.37 -51.93 -0.23 0.68 16 39 H 0.03 0.89 6.78 -51.93 -0.35 0.54 16 40 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 41 H 0.09 1.21 7.34 -51.93 -0.38 0.83 16 42 H 0.10 1.18 4.67 -51.93 -0.24 0.94 16 43 H 0.08 1.14 7.98 -51.93 -0.41 0.73 16 44 H 0.08 1.22 8.08 -51.93 -0.42 0.80 16 45 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 46 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 47 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 48 H 0.39 1.95 9.06 45.56 0.41 2.37 16 49 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 384.18 15.07 5.79 5.79 Total: -1.00 -34.63 384.18 -8.22 -42.85 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -7.15 Total: 4.47 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -2.44 Total: -12.85 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.42 Total: -39.00 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.18 Total: -18.16 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.63 -8.22 -42.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123645592.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.932 kcal (2) G-P(sol) polarization free energy of solvation -34.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds