Wall clock time and date at job start Tue Mar 31 2020 12:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47517 * 2 1 4 4 C 1.53003 * 109.47298 * 239.99709 * 2 1 3 5 5 C 1.53009 * 109.47221 * 119.99969 * 2 1 3 6 6 N 1.46493 * 109.46823 * 54.26021 * 5 2 1 7 7 C 1.46494 * 120.00245 * 275.81275 * 6 5 2 8 8 C 1.50699 * 109.47248 * 270.00353 * 7 6 5 9 9 H 1.07998 * 119.99847 * 359.97438 * 8 7 6 10 10 C 1.37876 * 120.00283 * 180.02562 * 8 7 6 11 11 N 1.31517 * 120.00255 * 179.97438 * 10 8 7 12 12 Si 1.86805 * 119.99860 * 359.97438 * 10 8 7 13 13 H 1.48493 * 109.47061 * 90.00457 * 12 10 8 14 14 H 1.48497 * 109.46835 * 210.00137 * 12 10 8 15 15 H 1.48497 * 109.47231 * 330.00104 * 12 10 8 16 16 C 1.34779 * 119.99829 * 95.81237 * 6 5 2 17 17 O 1.21287 * 120.00189 * 185.43941 * 16 6 5 18 18 C 1.50697 * 120.00192 * 5.44520 * 16 6 5 19 19 C 1.53001 * 109.47424 * 174.42083 * 18 16 6 20 20 C 1.50697 * 109.47044 * 180.02562 * 19 18 16 21 21 C 1.38291 * 119.97186 * 270.02076 * 20 19 18 22 22 C 1.38246 * 120.11353 * 180.02562 * 21 20 19 23 23 C 1.38168 * 120.05388 * 359.67292 * 22 21 20 24 24 C 1.38714 * 119.94144 * 0.57737 * 23 22 21 25 25 O 1.35899 * 120.05004 * 179.71969 * 24 23 22 26 26 C 1.38129 * 119.97425 * 90.00055 * 20 19 18 27 27 H 1.08998 * 109.47340 * 300.00689 * 1 2 3 28 28 H 1.08998 * 109.47251 * 60.00075 * 1 2 3 29 29 H 1.08997 * 109.47291 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47583 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.46799 * 300.00201 * 3 2 1 32 32 H 1.08999 * 109.46647 * 59.99443 * 3 2 1 33 33 H 1.08998 * 109.47314 * 304.13441 * 4 2 1 34 34 H 1.09001 * 109.46802 * 64.13247 * 4 2 1 35 35 H 1.09000 * 109.47032 * 184.12714 * 4 2 1 36 36 H 1.08993 * 109.46482 * 294.26274 * 5 2 1 37 37 H 1.08996 * 109.46598 * 174.26473 * 5 2 1 38 38 H 1.09000 * 109.47433 * 30.00389 * 7 6 5 39 39 H 1.08998 * 109.47356 * 150.00242 * 7 6 5 40 40 H 0.97002 * 119.99932 * 179.97438 * 11 10 8 41 41 H 1.08999 * 109.47419 * 54.41363 * 18 16 6 42 42 H 1.08999 * 109.46938 * 294.42483 * 18 16 6 43 43 H 1.08994 * 109.46973 * 59.99429 * 19 18 16 44 44 H 1.09000 * 109.46952 * 299.99486 * 19 18 16 45 45 H 1.07997 * 119.93958 * 359.97438 * 21 20 19 46 46 H 1.07998 * 119.97072 * 179.97438 * 22 21 20 47 47 H 1.07997 * 120.02491 * 180.29872 * 23 22 21 48 48 H 0.96706 * 113.99912 * 269.72396 * 25 24 23 49 49 H 1.07996 * 120.02817 * 0.02562 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2493 6 7 1.4421 -2.0568 1.3203 7 6 0.1134 -2.2340 1.9111 8 6 0.2513 -2.4926 3.3893 9 1 1.2308 -2.5224 3.8432 10 6 -0.8730 -2.6923 4.1621 11 7 -0.7526 -2.9184 5.4521 12 14 -2.5672 -2.6415 3.3769 13 1 -2.9424 -4.0039 2.9208 14 1 -3.5597 -2.1618 4.3719 15 1 -2.5463 -1.7184 2.2139 16 6 2.1146 -3.1224 0.8421 17 8 1.5817 -4.2115 0.8102 18 6 3.5287 -2.9609 0.3470 19 6 4.1049 -4.3332 -0.0076 20 6 5.5193 -4.1716 -0.5021 21 6 5.7621 -3.9777 -1.8496 22 6 7.0585 -3.8296 -2.3064 23 6 8.1145 -3.8684 -1.4163 24 6 7.8739 -4.0681 -0.0648 25 8 8.9114 -4.1123 0.8118 26 6 6.5720 -4.2170 0.3911 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6174 -1.7254 -1.2870 34 1 1.7383 -0.1665 -2.1377 35 1 3.1275 -0.7858 -1.2130 36 1 1.7629 -0.1515 2.1362 37 1 3.1251 -0.8110 1.1993 38 1 -0.4776 -1.3318 1.7537 39 1 -0.3842 -3.0811 1.4390 40 1 -1.5436 -3.0585 5.9958 41 1 4.1366 -2.5021 1.1269 42 1 3.5334 -2.3250 -0.5382 43 1 3.4971 -4.7919 -0.7874 44 1 4.1004 -4.9690 0.8777 45 1 4.9377 -3.9426 -2.5463 46 1 7.2456 -3.6787 -3.3593 47 1 9.1267 -3.7479 -1.7731 48 1 9.2713 -4.9990 0.9509 49 1 6.3818 -4.3685 1.4433 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123645592.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:16 Heat of formation + Delta-G solvation = -90.072989 kcal Electronic energy + Delta-G solvation = -27609.575747 eV Core-core repulsion = 23921.438691 eV Total energy + Delta-G solvation = -3688.137057 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.27901 -40.58021 -38.51641 -37.84132 -35.73099 -34.69336 -34.35247 -31.53134 -30.74203 -29.76885 -28.18609 -28.11039 -27.00183 -25.89108 -23.83830 -23.47894 -22.01965 -20.62858 -19.25573 -19.15084 -18.99223 -17.83744 -17.24576 -17.13146 -17.08282 -16.55087 -16.04052 -15.98150 -15.25452 -15.15748 -15.08674 -14.70299 -14.64681 -14.34258 -14.06989 -13.88804 -13.68187 -13.60074 -13.36232 -12.99993 -12.89251 -12.82220 -12.69308 -12.55107 -12.50499 -12.46511 -12.33996 -12.03659 -11.86243 -11.80649 -11.72169 -11.53627 -11.40224 -11.36083 -10.82296 -10.63956 -9.77605 -9.49985 -9.31634 -8.35286 -6.39268 0.31692 0.38950 1.29478 1.33443 1.41804 1.80938 2.28722 2.33341 2.72019 2.99302 3.30327 3.58628 3.86618 3.89721 3.93416 3.99567 4.08878 4.16406 4.20040 4.29460 4.44988 4.47533 4.53336 4.60717 4.63925 4.76257 4.78523 4.83778 4.89506 4.93448 4.96558 4.98371 5.02722 5.07246 5.12223 5.13125 5.17844 5.22091 5.37529 5.45848 5.47702 5.49228 5.50191 5.55911 5.68365 5.69730 5.94939 6.24483 6.61893 6.73927 6.86816 7.21040 7.44175 8.81808 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.013759 B = 0.003520 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.612970 B = 7952.765248 C = 9012.153216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.082 4.082 3 C -0.132 4.132 4 C -0.140 4.140 5 C 0.112 3.888 6 N -0.592 5.592 7 C 0.222 3.778 8 C -0.536 4.536 9 H 0.027 0.973 10 C 0.012 3.988 11 N -0.945 5.945 12 Si 0.942 3.058 13 H -0.277 1.277 14 H -0.274 1.274 15 H -0.238 1.238 16 C 0.501 3.499 17 O -0.597 6.597 18 C -0.128 4.128 19 C -0.061 4.061 20 C -0.065 4.065 21 C -0.129 4.129 22 C -0.096 4.096 23 C -0.154 4.154 24 C 0.098 3.902 25 O -0.513 6.513 26 C -0.160 4.160 27 H 0.047 0.953 28 H 0.070 0.930 29 H 0.038 0.962 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.052 0.948 33 H 0.034 0.966 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.095 0.905 38 H 0.058 0.942 39 H 0.013 0.987 40 H 0.268 0.732 41 H 0.095 0.905 42 H 0.127 0.873 43 H 0.078 0.922 44 H 0.055 0.945 45 H 0.141 0.859 46 H 0.156 0.844 47 H 0.145 0.855 48 H 0.408 0.592 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.783 5.225 -19.569 25.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.083 4.083 3 C -0.189 4.189 4 C -0.197 4.197 5 C -0.011 4.011 6 N -0.321 5.321 7 C 0.100 3.900 8 C -0.575 4.575 9 H 0.046 0.954 10 C -0.185 4.185 11 N -0.586 5.586 12 Si 0.765 3.235 13 H -0.202 1.202 14 H -0.199 1.199 15 H -0.161 1.161 16 C 0.291 3.709 17 O -0.478 6.478 18 C -0.167 4.167 19 C -0.099 4.099 20 C -0.066 4.066 21 C -0.147 4.147 22 C -0.114 4.114 23 C -0.172 4.172 24 C 0.053 3.947 25 O -0.326 6.326 26 C -0.179 4.179 27 H 0.067 0.933 28 H 0.089 0.911 29 H 0.057 0.943 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.053 0.947 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.114 0.886 38 H 0.076 0.924 39 H 0.031 0.969 40 H 0.077 0.923 41 H 0.114 0.886 42 H 0.144 0.856 43 H 0.097 0.903 44 H 0.074 0.926 45 H 0.158 0.842 46 H 0.173 0.827 47 H 0.163 0.837 48 H 0.267 0.733 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 15.316 5.254 -19.368 25.245 hybrid contribution -0.954 -1.031 1.020 1.735 sum 14.363 4.224 -18.348 23.681 Atomic orbital electron populations 1.22051 0.95590 1.01036 1.01741 1.20969 0.95584 0.96860 0.94869 1.21762 1.01730 0.92971 1.02473 1.22002 1.01354 0.99442 0.96939 1.21887 0.98575 0.82101 0.98495 1.47865 1.18607 1.07845 1.57810 1.19473 0.82362 0.97111 0.91040 1.21639 0.93426 1.48964 0.93468 0.95419 1.25806 1.03665 0.93955 0.95115 1.70052 1.31260 1.50289 1.06961 0.85794 0.78745 0.79499 0.79470 1.20241 1.19900 1.16090 1.21258 0.89222 0.83389 0.77022 1.90620 1.71239 1.27639 1.58344 1.21891 0.90775 0.99952 1.04101 1.20242 0.92090 0.95928 1.01592 1.19695 0.93844 0.98904 0.94119 1.21333 0.98237 1.00564 0.94523 1.21351 0.91429 0.97715 1.00887 1.21657 1.01162 1.02551 0.91859 1.18589 0.86603 1.00368 0.89096 1.84771 1.48289 1.36160 1.63407 1.21435 0.92589 1.03632 1.00237 0.93345 0.91116 0.94327 0.91119 0.91033 0.92849 0.94718 0.90844 0.90693 0.91642 0.88637 0.92402 0.96916 0.92319 0.88644 0.85576 0.90344 0.92623 0.84159 0.82664 0.83722 0.73272 0.86423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.07 6.98 71.98 0.50 -3.57 16 2 C -0.08 -1.95 0.85 -52.18 -0.04 -1.99 16 3 C -0.13 -2.35 8.47 71.98 0.61 -1.74 16 4 C -0.14 -2.89 6.84 71.98 0.49 -2.39 16 5 C 0.11 3.43 4.58 86.38 0.40 3.83 16 6 N -0.59 -24.08 2.00 -826.18 -1.65 -25.73 16 7 C 0.22 10.96 3.00 85.63 0.26 11.22 16 8 C -0.54 -32.10 9.94 25.60 0.25 -31.84 16 9 H 0.03 1.85 8.06 -2.91 -0.02 1.82 16 10 C 0.01 0.75 5.47 84.65 0.46 1.21 16 11 N -0.95 -60.62 13.96 21.45 0.30 -60.32 16 12 Si 0.94 45.25 27.47 68.60 1.88 47.13 16 13 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 14 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 15 H -0.24 -10.27 6.54 99.48 0.65 -9.62 16 16 C 0.50 20.34 6.40 87.66 0.56 20.91 16 17 O -0.60 -29.94 15.54 -3.05 -0.05 -29.99 16 18 C -0.13 -3.64 4.04 29.85 0.12 -3.52 16 19 C -0.06 -1.68 4.65 29.85 0.14 -1.55 16 20 C -0.07 -1.48 5.13 -19.88 -0.10 -1.58 16 21 C -0.13 -2.30 9.70 22.28 0.22 -2.08 16 22 C -0.10 -1.41 10.04 22.26 0.22 -1.19 16 23 C -0.15 -2.51 9.99 22.37 0.22 -2.29 16 24 C 0.10 1.98 6.70 22.51 0.15 2.13 16 25 O -0.51 -9.50 13.50 -92.42 -1.25 -10.75 16 26 C -0.16 -3.73 9.64 22.37 0.22 -3.52 16 27 H 0.05 1.41 7.72 -2.39 -0.02 1.40 16 28 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.04 1.28 5.76 -2.39 -0.01 1.27 16 30 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.03 0.88 6.74 -2.39 -0.02 0.86 16 34 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.07 1.25 6.49 -2.39 -0.02 1.24 16 36 H 0.07 2.22 8.11 -2.39 -0.02 2.20 16 37 H 0.10 2.43 6.11 -2.39 -0.01 2.41 16 38 H 0.06 2.65 4.37 -2.39 -0.01 2.64 16 39 H 0.01 0.69 6.78 -2.39 -0.02 0.67 16 40 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 41 H 0.10 2.59 7.34 -2.39 -0.02 2.57 16 42 H 0.13 2.82 4.67 -2.39 -0.01 2.80 16 43 H 0.08 2.21 7.98 -2.39 -0.02 2.19 16 44 H 0.05 1.79 8.08 -2.39 -0.02 1.77 16 45 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 46 H 0.16 1.33 8.06 -2.91 -0.02 1.30 16 47 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 48 H 0.41 3.61 9.06 -74.05 -0.67 2.93 16 49 H 0.12 2.90 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -80.13 384.18 4.13 -76.00 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: 0.22 Total: 21.60 kcal Atomic # 6 Polarization: -22.63 SS G_CDS: 4.68 Total: -17.95 kcal Atomic # 7 Polarization: -84.70 SS G_CDS: -1.35 Total: -86.05 kcal Atomic # 8 Polarization: -39.44 SS G_CDS: -1.30 Total: -40.73 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.88 Total: 47.13 kcal Total: -80.13 4.13 -76.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123645592.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.074 kcal (2) G-P(sol) polarization free energy of solvation -80.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds