Wall clock time and date at job start Tue Mar 31 2020 13:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34231 * 116.99773 * 2 1 4 4 O 1.20820 * 120.00370 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99741 * 179.97438 * 3 2 1 6 6 H 1.09005 * 109.47027 * 299.99878 * 5 3 2 7 7 C 1.50701 * 109.47030 * 179.97438 * 5 3 2 8 8 C 1.38290 * 119.92495 * 120.00010 * 7 5 3 9 9 C 1.38100 * 120.07606 * 180.02562 * 8 7 5 10 10 C 1.38917 * 119.92156 * 359.97438 * 9 8 7 11 11 N 1.39675 * 120.06964 * 179.97438 * 10 9 8 12 12 C 1.46506 * 119.99827 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.47237 * 179.72370 * 12 11 10 14 14 C 1.52996 * 109.46929 * 179.97438 * 13 12 11 15 15 C 1.50709 * 109.47079 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99331 * 0.02562 * 15 14 13 17 17 C 1.37869 * 120.00242 * 179.97438 * 15 14 13 18 18 N 1.31520 * 120.00070 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00390 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46828 * 0.02562 * 19 17 15 21 21 H 1.48491 * 109.47433 * 120.00076 * 19 17 15 22 22 H 1.48502 * 109.47473 * 240.00495 * 19 17 15 23 23 C 1.38909 * 119.85134 * 0.25597 * 10 9 8 24 24 C 1.38098 * 119.92379 * 359.49197 * 23 10 9 25 25 C 1.53002 * 109.47234 * 60.00054 * 5 3 2 26 26 C 1.52997 * 109.47033 * 179.97438 * 25 5 3 27 27 C 1.53007 * 109.46675 * 299.99731 * 25 5 3 28 28 H 1.08996 * 109.47773 * 300.00351 * 1 2 3 29 29 H 1.08999 * 109.47015 * 60.00348 * 1 2 3 30 30 H 1.08999 * 109.47528 * 180.02562 * 1 2 3 31 31 H 1.08004 * 119.96085 * 0.02562 * 8 7 5 32 32 H 1.07996 * 120.04178 * 179.97438 * 9 8 7 33 33 H 0.97005 * 120.00304 * 359.72695 * 11 10 9 34 34 H 1.09001 * 109.46512 * 299.72740 * 12 11 10 35 35 H 1.08998 * 109.47174 * 59.71861 * 12 11 10 36 36 H 1.09000 * 109.46986 * 299.99958 * 13 12 11 37 37 H 1.09002 * 109.46857 * 60.00093 * 13 12 11 38 38 H 1.09000 * 109.47441 * 299.99910 * 14 13 12 39 39 H 1.08994 * 109.47235 * 60.00181 * 14 13 12 40 40 H 0.96994 * 120.00439 * 179.97438 * 18 17 15 41 41 H 1.08002 * 120.03229 * 179.72481 * 23 10 9 42 42 H 1.08001 * 119.96359 * 180.25108 * 24 23 10 43 43 H 1.08996 * 109.47300 * 59.99882 * 25 5 3 44 44 H 1.09005 * 109.47456 * 60.00242 * 26 25 5 45 45 H 1.09008 * 109.46995 * 179.97438 * 26 25 5 46 46 H 1.08993 * 109.47466 * 299.99540 * 26 25 5 47 47 H 1.08999 * 109.47104 * 59.99983 * 27 25 5 48 48 H 1.09003 * 109.46574 * 180.02562 * 27 25 5 49 49 H 1.08997 * 109.46864 * 299.99542 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2749 0.0006 6 1 3.9556 0.7809 0.8909 7 6 3.9935 2.7201 -0.0002 8 6 4.7633 3.2124 1.0378 9 6 5.1562 4.5363 1.0405 10 6 4.7775 5.3736 -0.0013 11 7 5.1727 6.7133 -0.0014 12 6 4.7720 7.5951 -1.1006 13 6 5.3257 9.0001 -0.8551 14 6 4.9078 9.9207 -2.0034 15 6 5.4537 11.3046 -1.7620 16 1 6.0404 11.5069 -0.8781 17 6 5.2051 12.3119 -2.6699 18 7 4.4910 12.0653 -3.7465 19 14 5.8811 14.0273 -2.3703 20 1 6.6449 14.0428 -1.0968 21 1 6.7788 14.4081 -3.4900 22 1 4.7574 14.9945 -2.2858 23 6 4.0002 4.8770 -1.0399 24 6 3.6153 3.5508 -1.0390 25 6 4.1138 0.5811 -1.2483 26 6 5.6416 0.6617 -1.2480 27 6 3.6800 -0.8862 -1.2481 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 5.0577 2.5607 1.8472 32 1 5.7570 4.9204 1.8516 33 1 5.7088 7.0610 0.7285 34 1 5.1673 7.2076 -2.0396 35 1 3.6842 7.6375 -1.1544 36 1 4.9304 9.3874 0.0839 37 1 6.4136 8.9576 -0.8015 38 1 5.3034 9.5332 -2.9423 39 1 3.8200 9.9633 -2.0576 40 1 4.3157 12.7740 -4.3851 41 1 3.7005 5.5265 -1.8491 42 1 3.0143 3.1630 -1.8482 43 1 3.7244 1.0750 -2.1385 44 1 6.0314 0.1680 -0.3577 45 1 6.0318 0.1670 -2.1376 46 1 5.9503 1.7070 -1.2484 47 1 2.5915 -0.9433 -1.2485 48 1 4.0705 -1.3806 -2.1376 49 1 4.0694 -1.3800 -0.3579 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168433690.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:21 Heat of formation + Delta-G solvation = -86.158969 kcal Electronic energy + Delta-G solvation = -26225.231827 eV Core-core repulsion = 22537.264495 eV Total energy + Delta-G solvation = -3687.967332 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.05301 -39.36589 -37.20503 -36.51355 -35.48121 -33.51761 -31.70349 -30.78557 -30.09813 -28.58656 -27.15251 -26.97804 -25.48176 -23.50713 -22.53920 -21.81709 -20.98379 -20.31551 -19.93956 -17.82542 -17.09770 -17.06261 -16.54434 -16.40773 -15.62772 -15.28653 -14.80543 -14.51693 -14.40344 -14.33759 -13.94228 -13.75703 -13.44368 -13.23501 -12.96341 -12.86738 -12.82967 -12.40355 -12.37630 -12.28785 -11.89547 -11.79681 -11.70971 -11.35153 -11.11057 -10.97699 -10.94466 -10.81023 -10.77649 -10.59808 -10.55317 -10.43669 -9.99941 -9.56827 -9.48709 -9.12998 -8.76657 -8.39308 -7.14942 -6.03906 -4.06692 1.60227 1.62339 2.05448 2.58111 3.28826 3.36343 3.40125 3.73686 3.98894 4.36042 4.43249 4.45709 4.64915 4.83104 4.87941 4.92328 4.96914 5.07460 5.16187 5.18918 5.25090 5.32102 5.37216 5.44652 5.53567 5.62034 5.64945 5.70641 5.74063 5.78491 5.88295 5.92825 6.06366 6.10014 6.12287 6.16275 6.22134 6.44099 6.53716 6.58584 6.65065 6.74857 6.97141 7.01978 7.58033 7.60742 7.61303 7.73673 7.94900 7.98711 8.36776 9.00072 9.57699 11.07478 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.023525 B = 0.002008 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.932335 B =13937.824918 C =14287.253595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.355 6.355 3 C 0.460 3.540 4 O -0.491 6.491 5 C -0.020 4.020 6 H 0.109 0.891 7 C -0.151 4.151 8 C -0.058 4.058 9 C -0.206 4.206 10 C 0.231 3.769 11 N -0.742 5.742 12 C 0.120 3.880 13 C -0.120 4.120 14 C 0.024 3.976 15 C -0.521 4.521 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.894 5.894 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.199 4.199 24 C -0.035 4.035 25 C -0.084 4.084 26 C -0.143 4.143 27 C -0.160 4.160 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.099 0.901 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.398 0.602 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.018 0.982 39 H 0.018 0.982 40 H 0.261 0.739 41 H 0.123 0.877 42 H 0.112 0.888 43 H 0.075 0.925 44 H 0.055 0.945 45 H 0.057 0.943 46 H 0.064 0.936 47 H 0.076 0.924 48 H 0.055 0.945 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.433 -29.273 8.006 30.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.272 6.272 3 C 0.302 3.698 4 O -0.377 6.377 5 C -0.039 4.039 6 H 0.127 0.873 7 C -0.153 4.153 8 C -0.076 4.076 9 C -0.229 4.229 10 C 0.125 3.875 11 N -0.369 5.369 12 C -0.003 4.003 13 C -0.158 4.158 14 C -0.014 4.014 15 C -0.560 4.560 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.534 5.534 19 Si 0.721 3.279 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.222 4.222 24 C -0.054 4.054 25 C -0.103 4.103 26 C -0.200 4.200 27 C -0.216 4.216 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.117 0.883 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.232 0.768 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.070 0.930 41 H 0.141 0.859 42 H 0.130 0.870 43 H 0.093 0.907 44 H 0.074 0.926 45 H 0.076 0.924 46 H 0.083 0.917 47 H 0.094 0.906 48 H 0.074 0.926 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.804 -28.734 7.666 29.871 hybrid contribution 0.210 1.289 0.374 1.358 sum -2.594 -27.446 8.040 28.717 Atomic orbital electron populations 1.23256 0.77081 1.03442 1.02604 1.86609 1.22888 1.33519 1.84204 1.23905 0.92090 0.81292 0.72546 1.90712 1.66894 1.36209 1.43864 1.19971 0.86710 0.95530 1.01729 0.87305 1.18780 1.05358 0.93160 0.98022 1.20569 0.96058 0.94577 0.96430 1.20470 1.08259 0.94059 1.00122 1.17962 0.91635 0.84629 0.93267 1.45068 1.58277 1.06764 1.26748 1.21620 0.99252 0.90677 0.88794 1.21845 0.99921 0.92340 1.01692 1.19034 0.96920 0.93170 0.92254 1.21246 1.33072 0.94609 1.07023 0.92615 1.25033 0.95251 0.99079 0.95165 1.69971 1.39127 1.33022 1.11233 0.86521 0.78780 0.84432 0.78178 1.19757 1.20983 1.20976 1.20650 1.04818 0.96240 1.00468 1.20539 0.95567 0.92663 0.96621 1.21108 0.97024 0.96137 0.95992 1.21801 0.93694 1.02783 1.01765 1.22126 1.03019 0.94708 1.01789 0.92014 0.91945 0.88289 0.86596 0.86414 0.76826 0.92518 0.92539 0.92804 0.92794 0.96341 0.96340 0.92982 0.85917 0.87014 0.90679 0.92557 0.92441 0.91679 0.90568 0.92594 0.92472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 101.05 1.07 1.27 16 2 O -0.35 -3.18 7.48 -39.26 -0.29 -3.47 16 3 C 0.46 5.05 7.06 36.01 0.25 5.30 16 4 O -0.49 -7.08 14.86 -18.75 -0.28 -7.36 16 5 C -0.02 -0.19 2.10 -92.92 -0.19 -0.38 16 6 H 0.11 0.82 7.87 -51.93 -0.41 0.41 16 7 C -0.15 -1.75 3.13 -104.59 -0.33 -2.07 16 8 C -0.06 -0.65 9.66 -39.61 -0.38 -1.03 16 9 C -0.21 -2.58 9.90 -39.38 -0.39 -2.97 16 10 C 0.23 3.34 6.65 -83.78 -0.56 2.78 16 11 N -0.74 -11.00 5.73 -58.63 -0.34 -11.34 16 12 C 0.12 2.05 4.91 -4.04 -0.02 2.03 16 13 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 14 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 15 C -0.52 -14.66 9.11 -34.44 -0.31 -14.98 16 16 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -26.83 13.29 55.43 0.74 -26.09 16 19 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 C -0.20 -2.91 9.31 -39.38 -0.37 -3.28 16 24 C -0.04 -0.46 7.92 -39.62 -0.31 -0.78 16 25 C -0.08 -0.67 2.32 -90.62 -0.21 -0.88 16 26 C -0.14 -1.07 8.95 37.16 0.33 -0.74 16 27 C -0.16 -1.07 8.68 37.16 0.32 -0.75 16 28 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 29 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 30 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.12 1.00 7.94 -52.48 -0.42 0.58 16 32 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.40 5.30 8.49 -40.82 -0.35 4.95 16 34 H 0.06 0.98 7.97 -51.93 -0.41 0.56 16 35 H 0.06 0.99 7.93 -51.93 -0.41 0.58 16 36 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.12 1.82 6.73 -52.49 -0.35 1.47 16 42 H 0.11 1.40 7.50 -52.49 -0.39 1.01 16 43 H 0.07 0.66 7.38 -51.93 -0.38 0.27 16 44 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 46 H 0.06 0.58 7.21 -51.93 -0.37 0.21 16 47 H 0.08 0.56 5.32 -51.93 -0.28 0.28 16 48 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 49 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 396.17 15.07 5.97 5.97 Total: -1.00 -31.99 396.17 -9.09 -41.08 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -8.39 Total: 1.63 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: -1.48 Total: -17.02 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: 0.40 Total: -37.43 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: -0.57 Total: -10.83 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.99 -9.09 -41.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168433690.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.080 kcal (2) G-P(sol) polarization free energy of solvation -31.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds