Wall clock time and date at job start Tue Mar 31 2020 13:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34231 * 116.99773 * 2 1 4 4 O 1.20820 * 120.00370 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99741 * 179.97438 * 3 2 1 6 6 H 1.09005 * 109.47027 * 299.99878 * 5 3 2 7 7 C 1.50701 * 109.47030 * 179.97438 * 5 3 2 8 8 C 1.38290 * 119.92495 * 120.00010 * 7 5 3 9 9 C 1.38100 * 120.07606 * 180.02562 * 8 7 5 10 10 C 1.38917 * 119.92156 * 359.97438 * 9 8 7 11 11 N 1.39675 * 120.06964 * 179.97438 * 10 9 8 12 12 C 1.46506 * 119.99827 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.47237 * 179.72370 * 12 11 10 14 14 C 1.52996 * 109.46929 * 179.97438 * 13 12 11 15 15 C 1.50709 * 109.47079 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99331 * 0.02562 * 15 14 13 17 17 C 1.37869 * 120.00242 * 179.97438 * 15 14 13 18 18 N 1.31520 * 120.00070 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00390 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46828 * 0.02562 * 19 17 15 21 21 H 1.48491 * 109.47433 * 120.00076 * 19 17 15 22 22 H 1.48502 * 109.47473 * 240.00495 * 19 17 15 23 23 C 1.38909 * 119.85134 * 0.25597 * 10 9 8 24 24 C 1.38098 * 119.92379 * 359.49197 * 23 10 9 25 25 C 1.53002 * 109.47234 * 60.00054 * 5 3 2 26 26 C 1.52997 * 109.47033 * 179.97438 * 25 5 3 27 27 C 1.53007 * 109.46675 * 299.99731 * 25 5 3 28 28 H 1.08996 * 109.47773 * 300.00351 * 1 2 3 29 29 H 1.08999 * 109.47015 * 60.00348 * 1 2 3 30 30 H 1.08999 * 109.47528 * 180.02562 * 1 2 3 31 31 H 1.08004 * 119.96085 * 0.02562 * 8 7 5 32 32 H 1.07996 * 120.04178 * 179.97438 * 9 8 7 33 33 H 0.97005 * 120.00304 * 359.72695 * 11 10 9 34 34 H 1.09001 * 109.46512 * 299.72740 * 12 11 10 35 35 H 1.08998 * 109.47174 * 59.71861 * 12 11 10 36 36 H 1.09000 * 109.46986 * 299.99958 * 13 12 11 37 37 H 1.09002 * 109.46857 * 60.00093 * 13 12 11 38 38 H 1.09000 * 109.47441 * 299.99910 * 14 13 12 39 39 H 1.08994 * 109.47235 * 60.00181 * 14 13 12 40 40 H 0.96994 * 120.00439 * 179.97438 * 18 17 15 41 41 H 1.08002 * 120.03229 * 179.72481 * 23 10 9 42 42 H 1.08001 * 119.96359 * 180.25108 * 24 23 10 43 43 H 1.08996 * 109.47300 * 59.99882 * 25 5 3 44 44 H 1.09005 * 109.47456 * 60.00242 * 26 25 5 45 45 H 1.09008 * 109.46995 * 179.97438 * 26 25 5 46 46 H 1.08993 * 109.47466 * 299.99540 * 26 25 5 47 47 H 1.08999 * 109.47104 * 59.99983 * 27 25 5 48 48 H 1.09003 * 109.46574 * 180.02562 * 27 25 5 49 49 H 1.08997 * 109.46864 * 299.99542 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2749 0.0006 6 1 3.9556 0.7809 0.8909 7 6 3.9935 2.7201 -0.0002 8 6 4.7633 3.2124 1.0378 9 6 5.1562 4.5363 1.0405 10 6 4.7775 5.3736 -0.0013 11 7 5.1727 6.7133 -0.0014 12 6 4.7720 7.5951 -1.1006 13 6 5.3257 9.0001 -0.8551 14 6 4.9078 9.9207 -2.0034 15 6 5.4537 11.3046 -1.7620 16 1 6.0404 11.5069 -0.8781 17 6 5.2051 12.3119 -2.6699 18 7 4.4910 12.0653 -3.7465 19 14 5.8811 14.0273 -2.3703 20 1 6.6449 14.0428 -1.0968 21 1 6.7788 14.4081 -3.4900 22 1 4.7574 14.9945 -2.2858 23 6 4.0002 4.8770 -1.0399 24 6 3.6153 3.5508 -1.0390 25 6 4.1138 0.5811 -1.2483 26 6 5.6416 0.6617 -1.2480 27 6 3.6800 -0.8862 -1.2481 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 5.0577 2.5607 1.8472 32 1 5.7570 4.9204 1.8516 33 1 5.7088 7.0610 0.7285 34 1 5.1673 7.2076 -2.0396 35 1 3.6842 7.6375 -1.1544 36 1 4.9304 9.3874 0.0839 37 1 6.4136 8.9576 -0.8015 38 1 5.3034 9.5332 -2.9423 39 1 3.8200 9.9633 -2.0576 40 1 4.3157 12.7740 -4.3851 41 1 3.7005 5.5265 -1.8491 42 1 3.0143 3.1630 -1.8482 43 1 3.7244 1.0750 -2.1385 44 1 6.0314 0.1680 -0.3577 45 1 6.0318 0.1670 -2.1376 46 1 5.9503 1.7070 -1.2484 47 1 2.5915 -0.9433 -1.2485 48 1 4.0705 -1.3806 -2.1376 49 1 4.0694 -1.3800 -0.3579 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168433690.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:20 Heat of formation + Delta-G solvation = -102.580755 kcal Electronic energy + Delta-G solvation = -26225.943929 eV Core-core repulsion = 22537.264495 eV Total energy + Delta-G solvation = -3688.679434 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.89123 -40.34458 -38.16597 -37.37993 -36.68417 -35.28816 -33.35500 -31.79533 -31.18528 -29.45318 -28.36628 -27.69554 -26.69422 -25.01239 -23.77158 -22.66964 -22.12934 -21.77819 -20.74148 -18.68608 -18.50992 -18.17691 -17.83075 -17.33818 -16.65668 -16.51440 -16.33707 -16.28886 -15.21931 -15.15181 -14.91102 -14.61408 -14.45278 -14.26586 -14.20885 -14.13462 -13.75588 -13.56508 -13.52847 -13.25731 -12.99776 -12.89266 -12.78659 -12.65179 -12.57164 -12.32979 -12.04760 -11.89608 -11.77262 -11.67123 -11.53356 -11.47066 -11.46119 -11.28838 -11.19367 -10.76503 -10.58817 -9.77065 -8.25403 -8.22763 -6.34092 0.59980 0.63049 1.21332 1.39139 1.39239 1.52642 1.84642 2.37802 2.55613 3.00360 3.10783 3.58099 3.74649 3.98000 4.03731 4.13431 4.15655 4.19898 4.20402 4.34698 4.34748 4.44904 4.46868 4.53860 4.59727 4.67711 4.74124 4.77047 4.88578 4.93165 4.94188 5.03762 5.11982 5.12422 5.15819 5.17646 5.31863 5.38675 5.45850 5.47472 5.49573 5.52285 5.62305 5.67793 5.77352 5.80878 5.98699 6.19656 6.42656 6.79134 6.82496 6.90838 7.35421 8.89471 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.023525 B = 0.002008 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.932335 B =13937.824918 C =14287.253595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.348 6.348 3 C 0.462 3.538 4 O -0.534 6.534 5 C -0.019 4.019 6 H 0.137 0.863 7 C -0.144 4.144 8 C -0.056 4.056 9 C -0.204 4.204 10 C 0.210 3.790 11 N -0.741 5.741 12 C 0.138 3.862 13 C -0.102 4.102 14 C 0.025 3.975 15 C -0.542 4.542 16 H 0.062 0.938 17 C -0.003 4.003 18 N -0.934 5.934 19 Si 0.967 3.033 20 H -0.261 1.261 21 H -0.278 1.278 22 H -0.279 1.279 23 C -0.221 4.221 24 C -0.046 4.046 25 C -0.080 4.080 26 C -0.140 4.140 27 C -0.155 4.155 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.133 0.867 31 H 0.152 0.848 32 H 0.139 0.861 33 H 0.406 0.594 34 H 0.050 0.950 35 H 0.044 0.956 36 H 0.059 0.941 37 H 0.061 0.939 38 H -0.005 1.005 39 H -0.008 1.008 40 H 0.264 0.736 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.060 0.940 44 H 0.072 0.928 45 H 0.063 0.937 46 H 0.046 0.954 47 H 0.069 0.931 48 H 0.063 0.937 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.207 -31.111 10.071 32.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.265 6.265 3 C 0.306 3.694 4 O -0.422 6.422 5 C -0.038 4.038 6 H 0.155 0.845 7 C -0.146 4.146 8 C -0.074 4.074 9 C -0.226 4.226 10 C 0.105 3.895 11 N -0.370 5.370 12 C 0.013 3.987 13 C -0.140 4.140 14 C -0.012 4.012 15 C -0.580 4.580 16 H 0.081 0.919 17 C -0.201 4.201 18 N -0.574 5.574 19 Si 0.792 3.208 20 H -0.185 1.185 21 H -0.204 1.204 22 H -0.204 1.204 23 C -0.244 4.244 24 C -0.065 4.065 25 C -0.099 4.099 26 C -0.197 4.197 27 C -0.211 4.211 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.151 0.849 31 H 0.170 0.830 32 H 0.157 0.843 33 H 0.242 0.758 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.013 0.987 39 H 0.011 0.989 40 H 0.073 0.927 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.078 0.922 44 H 0.091 0.909 45 H 0.082 0.918 46 H 0.065 0.935 47 H 0.088 0.912 48 H 0.082 0.918 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.571 -30.625 9.751 32.179 hybrid contribution -0.250 1.706 -0.288 1.748 sum -1.821 -28.919 9.463 30.483 Atomic orbital electron populations 1.23504 0.75878 1.05524 1.02065 1.86611 1.24046 1.32269 1.83547 1.24218 0.92684 0.81187 0.71304 1.90706 1.67885 1.37617 1.46040 1.20085 0.85780 0.94312 1.03599 0.84519 1.19064 1.04221 0.94210 0.97148 1.20985 0.94993 0.94532 0.96921 1.20768 1.07790 0.94328 0.99740 1.18128 0.92589 0.84565 0.94175 1.44774 1.59076 1.06804 1.26387 1.21191 0.98282 0.89688 0.89547 1.21558 1.00353 0.92692 0.99437 1.18932 0.95053 0.93821 0.93424 1.21701 1.33150 0.95867 1.07294 0.91932 1.26018 0.95486 1.03766 0.94827 1.70105 1.40418 1.34582 1.12275 0.85363 0.78192 0.78713 0.78561 1.18453 1.20353 1.20447 1.20688 1.06063 0.96918 1.00745 1.20611 0.95931 0.92491 0.97494 1.21081 0.97362 0.96817 0.94658 1.21772 0.93098 1.01872 1.02955 1.22081 1.02609 0.93626 1.02830 0.92478 0.92654 0.84884 0.83023 0.84339 0.75834 0.93216 0.93733 0.92252 0.91980 0.98693 0.98915 0.92737 0.87523 0.87388 0.92191 0.90907 0.91778 0.93472 0.91227 0.91845 0.91165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.56 113.37 1.20 1.49 16 2 O -0.35 -5.65 7.48 -51.42 -0.38 -6.04 16 3 C 0.46 9.66 7.06 71.24 0.50 10.17 16 4 O -0.53 -15.47 14.86 21.98 0.33 -15.14 16 5 C -0.02 -0.32 2.10 -12.28 -0.03 -0.34 16 6 H 0.14 1.54 7.87 -2.38 -0.02 1.52 16 7 C -0.14 -3.17 3.13 -19.84 -0.06 -3.23 16 8 C -0.06 -1.11 9.66 22.25 0.21 -0.90 16 9 C -0.20 -4.73 9.90 22.40 0.22 -4.51 16 10 C 0.21 6.06 6.65 38.22 0.25 6.31 16 11 N -0.74 -22.02 5.73 -339.40 -1.95 -23.96 16 12 C 0.14 4.87 4.91 86.38 0.42 5.30 16 13 C -0.10 -4.14 5.27 30.59 0.16 -3.98 16 14 C 0.03 1.34 4.97 29.85 0.15 1.49 16 15 C -0.54 -30.93 9.11 25.60 0.23 -30.69 16 16 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 17 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 18 N -0.93 -57.35 13.29 21.45 0.28 -57.06 16 19 Si 0.97 44.47 29.54 68.60 2.03 46.49 16 20 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 23 C -0.22 -6.79 9.31 22.40 0.21 -6.58 16 24 C -0.05 -1.26 7.92 22.25 0.18 -1.09 16 25 C -0.08 -1.14 2.32 -10.79 -0.02 -1.17 16 26 C -0.14 -1.79 8.95 71.98 0.64 -1.15 16 27 C -0.15 -1.69 8.68 71.98 0.62 -1.06 16 28 H 0.06 0.78 8.13 -2.39 -0.02 0.76 16 29 H 0.05 0.78 8.13 -2.39 -0.02 0.76 16 30 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.15 1.93 7.94 -2.91 -0.02 1.91 16 32 H 0.14 2.60 8.06 -2.91 -0.02 2.57 16 33 H 0.41 10.47 8.49 -92.70 -0.79 9.68 16 34 H 0.05 1.81 7.97 -2.39 -0.02 1.79 16 35 H 0.04 1.67 7.93 -2.39 -0.02 1.65 16 36 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 38 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 39 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 40 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 41 H 0.11 3.48 6.73 -2.91 -0.02 3.46 16 42 H 0.11 2.91 7.50 -2.91 -0.02 2.88 16 43 H 0.06 1.03 7.38 -2.39 -0.02 1.01 16 44 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 45 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 46 H 0.05 0.78 7.21 -2.39 -0.02 0.76 16 47 H 0.07 0.87 5.32 -2.39 -0.01 0.86 16 48 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 49 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 Total: -1.00 -70.80 396.17 5.80 -65.00 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: 0.13 Total: 20.37 kcal Atomic # 6 Polarization: -35.02 SS G_CDS: 5.36 Total: -29.66 kcal Atomic # 7 Polarization: -79.36 SS G_CDS: -1.66 Total: -81.02 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.06 Total: -21.18 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Total: -70.80 5.80 -65.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168433690.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.583 kcal (2) G-P(sol) polarization free energy of solvation -70.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds