Wall clock time and date at job start Tue Mar 31 2020 13:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35895 * 117.00038 * 2 1 4 4 C 1.38737 * 120.05327 * 179.97438 * 3 2 1 5 5 C 1.38142 * 119.94098 * 180.02562 * 4 3 2 6 6 C 1.38269 * 120.05670 * 0.02736 * 5 4 3 7 7 C 1.50706 * 119.94114 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47103 * 299.99761 * 7 6 5 9 9 C 1.52997 * 109.47238 * 59.99954 * 7 6 5 10 10 C 1.53002 * 109.46925 * 179.97438 * 7 6 5 11 11 C 1.50696 * 109.47300 * 180.02562 * 10 7 6 12 12 O 1.21279 * 119.99697 * 359.97438 * 11 10 7 13 13 N 1.34777 * 120.00141 * 179.97438 * 11 10 7 14 14 C 1.46496 * 119.99875 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47037 * 180.02562 * 14 13 11 16 16 C 1.52996 * 109.47346 * 180.02562 * 15 14 13 17 17 C 1.50702 * 109.47592 * 180.02562 * 16 15 14 18 18 H 1.07995 * 119.99266 * 359.97438 * 17 16 15 19 19 C 1.37873 * 120.00217 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99909 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99980 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46950 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47074 * 119.99839 * 21 19 17 24 24 H 1.48497 * 109.47111 * 239.99631 * 21 19 17 25 25 C 1.38262 * 120.11316 * 0.24341 * 6 5 4 26 26 C 1.38147 * 120.05382 * 359.45639 * 25 6 5 27 27 H 1.09001 * 109.47139 * 300.00432 * 1 2 3 28 28 H 1.09003 * 109.46666 * 60.00318 * 1 2 3 29 29 H 1.08998 * 109.46972 * 180.02562 * 1 2 3 30 30 H 1.07993 * 120.02833 * 359.97438 * 4 3 2 31 31 H 1.07998 * 119.97194 * 179.97438 * 5 4 3 32 32 H 1.08992 * 109.47280 * 59.99899 * 8 7 6 33 33 H 1.09002 * 109.46777 * 180.02562 * 8 7 6 34 34 H 1.09000 * 109.47140 * 300.00046 * 8 7 6 35 35 H 1.09004 * 109.47261 * 59.99705 * 9 7 6 36 36 H 1.09002 * 109.47153 * 179.97438 * 9 7 6 37 37 H 1.09001 * 109.46832 * 299.99686 * 9 7 6 38 38 H 1.09004 * 109.46930 * 299.99901 * 10 7 6 39 39 H 1.09004 * 109.47059 * 59.99503 * 10 7 6 40 40 H 0.96999 * 120.00043 * 0.02562 * 13 11 10 41 41 H 1.08996 * 109.47565 * 300.00629 * 14 13 11 42 42 H 1.09004 * 109.47374 * 60.00435 * 14 13 11 43 43 H 1.08996 * 109.47407 * 300.00665 * 15 14 13 44 44 H 1.09000 * 109.46986 * 60.00436 * 15 14 13 45 45 H 1.09004 * 109.47108 * 300.00289 * 16 15 14 46 46 H 1.09004 * 109.47368 * 60.00188 * 16 15 14 47 47 H 0.97002 * 119.99804 * 179.97438 * 20 19 17 48 48 H 1.08003 * 119.97178 * 179.70593 * 25 6 5 49 49 H 1.08001 * 120.02610 * 180.24214 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 0.0005 5 6 4.0562 2.5168 0.0011 6 6 3.3020 3.6757 0.0016 7 6 3.9862 5.0184 0.0028 8 6 4.8600 5.1445 1.2524 9 6 4.8608 5.1463 -1.2460 10 6 2.9325 6.1278 0.0026 11 6 3.6167 7.4705 0.0031 12 8 4.8278 7.5339 0.0041 13 7 2.8826 8.6008 0.0025 14 6 3.5478 9.9061 0.0036 15 6 2.4941 11.0154 0.0033 16 6 3.1886 12.3787 0.0038 17 6 2.1508 13.4714 0.0041 18 1 1.1008 13.2187 0.0035 19 6 2.5418 14.7935 0.0040 20 7 3.8204 15.1011 0.0042 21 14 1.2553 16.1479 0.0051 22 1 -0.1008 15.5425 0.0054 23 1 1.4228 16.9887 1.2176 24 1 1.4211 16.9891 -1.2073 25 6 1.9212 3.6047 0.0068 26 6 1.2916 2.3751 0.0000 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 4.0209 0.3798 0.0014 31 1 5.1346 2.5749 0.0019 32 1 5.6106 4.3542 1.2522 33 1 5.3545 6.1159 1.2534 34 1 4.2369 5.0535 2.1421 35 1 4.2384 5.0564 -2.1363 36 1 5.3554 6.1176 -1.2454 37 1 5.6115 4.3559 -1.2463 38 1 2.3104 6.0378 -0.8879 39 1 2.3090 6.0368 0.8921 40 1 1.9140 8.5501 0.0021 41 1 4.1696 9.9964 0.8942 42 1 4.1716 9.9968 -0.8857 43 1 1.8719 10.9254 -0.8871 44 1 1.8707 10.9246 0.8928 45 1 3.8111 12.4690 0.8941 46 1 3.8118 12.4693 -0.8859 47 1 4.0955 16.0313 0.0037 48 1 1.3343 4.5114 0.0120 49 1 0.2130 2.3202 0.0000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182439201.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:43 Heat of formation + Delta-G solvation = -73.271397 kcal Electronic energy + Delta-G solvation = -25971.868394 eV Core-core repulsion = 22284.459909 eV Total energy + Delta-G solvation = -3687.408485 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.81049 -39.87780 -38.28341 -35.89446 -34.90926 -33.34199 -31.62638 -31.27932 -29.71895 -28.50827 -27.58861 -27.21360 -26.32525 -23.36971 -22.90502 -22.46993 -20.75487 -20.21496 -19.18765 -18.56610 -17.04417 -16.50232 -16.31205 -16.08506 -15.60786 -15.48647 -15.21646 -14.93340 -14.48199 -14.46472 -14.16053 -13.87507 -13.84182 -13.41486 -13.27683 -12.86965 -12.56332 -12.35595 -12.25661 -12.09990 -11.83797 -11.82840 -11.51485 -11.41657 -11.22946 -11.07188 -10.91823 -10.87462 -10.74208 -10.67909 -10.57072 -9.87998 -9.68008 -9.26880 -9.26440 -9.09784 -8.74321 -8.39220 -8.33323 -6.03603 -4.06713 1.07119 1.16046 2.77907 2.93472 3.28531 3.35722 3.37942 3.41152 3.48487 4.36404 4.42596 4.53316 4.54980 4.64646 4.74588 4.78755 4.85592 4.97798 5.05267 5.08632 5.16491 5.28438 5.32276 5.38363 5.41503 5.52621 5.71638 5.72446 5.74086 5.76821 5.86756 5.96159 6.00022 6.00998 6.11363 6.15031 6.33719 6.41740 6.43621 6.48281 6.58379 6.61423 6.84026 6.99626 7.07198 7.61906 7.71849 7.74220 7.95195 8.35791 8.43168 9.00204 9.57645 11.07660 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.025833 B = 0.001867 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.623009 B =14990.699583 C =15862.052638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.116 3.884 4 C -0.149 4.149 5 C -0.073 4.073 6 C -0.100 4.100 7 C 0.000 4.000 8 C -0.150 4.150 9 C -0.150 4.150 10 C -0.137 4.137 11 C 0.509 3.491 12 O -0.535 6.535 13 N -0.727 5.727 14 C 0.116 3.884 15 C -0.121 4.121 16 C 0.023 3.977 17 C -0.522 4.522 18 H 0.056 0.944 19 C 0.056 3.944 20 N -0.893 5.893 21 Si 0.893 3.107 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C -0.085 4.085 26 C -0.205 4.205 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.098 0.902 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.052 0.948 33 H 0.090 0.910 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.090 0.910 37 H 0.052 0.948 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.397 0.603 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.261 0.739 48 H 0.129 0.871 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.194 -30.306 -0.002 30.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.072 3.928 4 C -0.168 4.168 5 C -0.091 4.091 6 C -0.100 4.100 7 C -0.001 4.001 8 C -0.207 4.207 9 C -0.207 4.207 10 C -0.177 4.177 11 C 0.295 3.705 12 O -0.413 6.413 13 N -0.378 5.378 14 C -0.006 4.006 15 C -0.159 4.159 16 C -0.015 4.015 17 C -0.560 4.560 18 H 0.074 0.926 19 C -0.145 4.145 20 N -0.532 5.532 21 Si 0.721 3.279 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.103 4.103 26 C -0.223 4.223 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.117 0.883 30 H 0.146 0.854 31 H 0.147 0.853 32 H 0.071 0.929 33 H 0.109 0.891 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.109 0.891 37 H 0.071 0.929 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.231 0.769 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.037 0.963 46 H 0.037 0.963 47 H 0.070 0.930 48 H 0.146 0.854 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.120 -30.283 -0.001 30.562 hybrid contribution -1.571 0.894 -0.001 1.807 sum -5.690 -29.389 -0.001 29.935 Atomic orbital electron populations 1.23043 0.78446 1.03860 1.01390 1.86057 1.21344 1.27132 1.88914 1.19039 0.92398 0.84096 0.97311 1.20408 0.91340 0.98589 1.06414 1.20800 0.99991 0.90789 0.97563 1.19830 0.93297 0.94868 1.02041 1.19120 0.94181 0.89076 0.97679 1.22134 0.99163 1.04282 0.95149 1.22137 0.99158 1.04283 0.95157 1.21881 0.99298 0.92365 1.04138 1.20535 0.87894 0.85857 0.76196 1.90570 1.14009 1.87269 1.49493 1.46268 1.10231 1.06583 1.74705 1.21628 0.96403 0.80681 1.01927 1.21883 0.97233 0.95962 1.00809 1.19038 0.95884 0.88888 0.97654 1.21241 0.92999 0.90972 1.50835 0.92609 1.25035 0.95268 0.98921 0.95284 1.69977 1.14477 1.18149 1.50620 0.86528 0.81772 0.82022 0.77611 1.19775 1.20992 1.20998 1.20992 0.94112 0.97186 0.98044 1.21223 0.99921 0.92362 1.08819 0.92656 0.92649 0.88326 0.85361 0.85300 0.92929 0.89116 0.93419 0.93417 0.89111 0.92932 0.88845 0.88841 0.76919 0.91816 0.91807 0.92787 0.92783 0.96278 0.96275 0.92978 0.85353 0.85598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.14 16 2 O -0.32 -2.89 10.50 -19.41 -0.20 -3.09 16 3 C 0.12 1.10 6.69 -39.21 -0.26 0.84 16 4 C -0.15 -1.38 9.99 -39.43 -0.39 -1.77 16 5 C -0.07 -0.67 8.70 -39.61 -0.34 -1.02 16 6 C -0.10 -0.94 4.76 -104.60 -0.50 -1.44 16 7 C 0.00 0.00 0.60 -155.66 -0.09 -0.09 16 8 C -0.15 -1.64 7.99 37.16 0.30 -1.34 16 9 C -0.15 -1.64 7.99 37.16 0.30 -1.34 16 10 C -0.14 -1.31 3.43 -27.88 -0.10 -1.41 16 11 C 0.51 6.74 7.24 -10.99 -0.08 6.66 16 12 O -0.54 -8.77 11.35 5.56 0.06 -8.71 16 13 N -0.73 -9.70 5.56 -60.30 -0.33 -10.04 16 14 C 0.12 1.98 5.67 -4.04 -0.02 1.95 16 15 C -0.12 -2.31 5.27 -26.73 -0.14 -2.45 16 16 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 17 C -0.52 -14.49 9.11 -34.44 -0.31 -14.80 16 18 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 19 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 20 N -0.89 -26.67 13.29 55.43 0.74 -25.94 16 21 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 C -0.09 -0.74 8.97 -39.61 -0.36 -1.09 16 26 C -0.20 -1.74 9.04 -39.43 -0.36 -2.09 16 27 H 0.05 0.25 7.66 -51.93 -0.40 -0.15 16 28 H 0.05 0.25 7.66 -51.93 -0.40 -0.15 16 29 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 31 H 0.13 1.02 7.09 -52.49 -0.37 0.65 16 32 H 0.05 0.52 7.38 -51.93 -0.38 0.13 16 33 H 0.09 1.21 5.51 -51.93 -0.29 0.92 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.09 1.21 5.51 -51.93 -0.29 0.92 16 37 H 0.05 0.52 7.38 -51.93 -0.38 0.13 16 38 H 0.09 0.75 7.52 -51.93 -0.39 0.36 16 39 H 0.09 0.75 7.50 -51.93 -0.39 0.36 16 40 H 0.40 4.21 8.47 -40.82 -0.35 3.86 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 42 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 48 H 0.13 0.89 5.89 -52.48 -0.31 0.58 16 49 H 0.13 0.81 6.30 -52.49 -0.33 0.48 16 LS Contribution 388.50 15.07 5.85 5.85 Total: -1.00 -32.39 388.50 -8.55 -40.95 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -8.04 Total: 0.95 kcal Atomic # 6 Polarization: -14.71 SS G_CDS: -1.61 Total: -16.32 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: 0.40 Total: -35.97 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: -0.14 Total: -11.80 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.39 -8.55 -40.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182439201.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.326 kcal (2) G-P(sol) polarization free energy of solvation -32.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds