Wall clock time and date at job start Tue Mar 31 2020 13:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35895 * 117.00038 * 2 1 4 4 C 1.38737 * 120.05327 * 179.97438 * 3 2 1 5 5 C 1.38142 * 119.94098 * 180.02562 * 4 3 2 6 6 C 1.38269 * 120.05670 * 0.02736 * 5 4 3 7 7 C 1.50706 * 119.94114 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47103 * 299.99761 * 7 6 5 9 9 C 1.52997 * 109.47238 * 59.99954 * 7 6 5 10 10 C 1.53002 * 109.46925 * 179.97438 * 7 6 5 11 11 C 1.50696 * 109.47300 * 180.02562 * 10 7 6 12 12 O 1.21279 * 119.99697 * 359.97438 * 11 10 7 13 13 N 1.34777 * 120.00141 * 179.97438 * 11 10 7 14 14 C 1.46496 * 119.99875 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47037 * 180.02562 * 14 13 11 16 16 C 1.52996 * 109.47346 * 180.02562 * 15 14 13 17 17 C 1.50702 * 109.47592 * 180.02562 * 16 15 14 18 18 H 1.07995 * 119.99266 * 359.97438 * 17 16 15 19 19 C 1.37873 * 120.00217 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99909 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99980 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46950 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47074 * 119.99839 * 21 19 17 24 24 H 1.48497 * 109.47111 * 239.99631 * 21 19 17 25 25 C 1.38262 * 120.11316 * 0.24341 * 6 5 4 26 26 C 1.38147 * 120.05382 * 359.45639 * 25 6 5 27 27 H 1.09001 * 109.47139 * 300.00432 * 1 2 3 28 28 H 1.09003 * 109.46666 * 60.00318 * 1 2 3 29 29 H 1.08998 * 109.46972 * 180.02562 * 1 2 3 30 30 H 1.07993 * 120.02833 * 359.97438 * 4 3 2 31 31 H 1.07998 * 119.97194 * 179.97438 * 5 4 3 32 32 H 1.08992 * 109.47280 * 59.99899 * 8 7 6 33 33 H 1.09002 * 109.46777 * 180.02562 * 8 7 6 34 34 H 1.09000 * 109.47140 * 300.00046 * 8 7 6 35 35 H 1.09004 * 109.47261 * 59.99705 * 9 7 6 36 36 H 1.09002 * 109.47153 * 179.97438 * 9 7 6 37 37 H 1.09001 * 109.46832 * 299.99686 * 9 7 6 38 38 H 1.09004 * 109.46930 * 299.99901 * 10 7 6 39 39 H 1.09004 * 109.47059 * 59.99503 * 10 7 6 40 40 H 0.96999 * 120.00043 * 0.02562 * 13 11 10 41 41 H 1.08996 * 109.47565 * 300.00629 * 14 13 11 42 42 H 1.09004 * 109.47374 * 60.00435 * 14 13 11 43 43 H 1.08996 * 109.47407 * 300.00665 * 15 14 13 44 44 H 1.09000 * 109.46986 * 60.00436 * 15 14 13 45 45 H 1.09004 * 109.47108 * 300.00289 * 16 15 14 46 46 H 1.09004 * 109.47368 * 60.00188 * 16 15 14 47 47 H 0.97002 * 119.99804 * 179.97438 * 20 19 17 48 48 H 1.08003 * 119.97178 * 179.70593 * 25 6 5 49 49 H 1.08001 * 120.02610 * 180.24214 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 0.0005 5 6 4.0562 2.5168 0.0011 6 6 3.3020 3.6757 0.0016 7 6 3.9862 5.0184 0.0028 8 6 4.8600 5.1445 1.2524 9 6 4.8608 5.1463 -1.2460 10 6 2.9325 6.1278 0.0026 11 6 3.6167 7.4705 0.0031 12 8 4.8278 7.5339 0.0041 13 7 2.8826 8.6008 0.0025 14 6 3.5478 9.9061 0.0036 15 6 2.4941 11.0154 0.0033 16 6 3.1886 12.3787 0.0038 17 6 2.1508 13.4714 0.0041 18 1 1.1008 13.2187 0.0035 19 6 2.5418 14.7935 0.0040 20 7 3.8204 15.1011 0.0042 21 14 1.2553 16.1479 0.0051 22 1 -0.1008 15.5425 0.0054 23 1 1.4228 16.9887 1.2176 24 1 1.4211 16.9891 -1.2073 25 6 1.9212 3.6047 0.0068 26 6 1.2916 2.3751 0.0000 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 4.0209 0.3798 0.0014 31 1 5.1346 2.5749 0.0019 32 1 5.6106 4.3542 1.2522 33 1 5.3545 6.1159 1.2534 34 1 4.2369 5.0535 2.1421 35 1 4.2384 5.0564 -2.1363 36 1 5.3554 6.1176 -1.2454 37 1 5.6115 4.3559 -1.2463 38 1 2.3104 6.0378 -0.8879 39 1 2.3090 6.0368 0.8921 40 1 1.9140 8.5501 0.0021 41 1 4.1696 9.9964 0.8942 42 1 4.1716 9.9968 -0.8857 43 1 1.8719 10.9254 -0.8871 44 1 1.8707 10.9246 0.8928 45 1 3.8111 12.4690 0.8941 46 1 3.8118 12.4693 -0.8859 47 1 4.0955 16.0313 0.0037 48 1 1.3343 4.5114 0.0120 49 1 0.2130 2.3202 0.0000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182439201.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:42 Heat of formation + Delta-G solvation = -92.234937 kcal Electronic energy + Delta-G solvation = -25972.690714 eV Core-core repulsion = 22284.459909 eV Total energy + Delta-G solvation = -3688.230806 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.58353 -40.72776 -39.04979 -37.10834 -35.96383 -35.13363 -33.10131 -32.16544 -30.45114 -29.58047 -28.18877 -28.08025 -27.81256 -24.96181 -23.61381 -23.32907 -22.27692 -21.36564 -20.08541 -19.16985 -18.52926 -17.95745 -17.06312 -16.78364 -16.62519 -16.60040 -16.40243 -16.11054 -15.71176 -15.61155 -14.97833 -14.91753 -14.57616 -14.29032 -14.08906 -14.05459 -13.73884 -13.70495 -13.40676 -13.35839 -12.83836 -12.83469 -12.69399 -12.53611 -12.33732 -12.32813 -12.06988 -12.06783 -11.88813 -11.64014 -11.58936 -11.52420 -11.36109 -11.18835 -10.56093 -10.42302 -9.95959 -9.89897 -8.98996 -8.19544 -6.30981 0.43840 0.49476 1.41812 1.41897 1.55111 1.74360 2.28774 2.42839 2.43667 2.82970 3.14277 3.61242 3.74940 3.97581 4.05882 4.08531 4.09720 4.24761 4.25131 4.35061 4.40975 4.41809 4.46764 4.58016 4.62438 4.66384 4.74442 4.76242 4.77408 4.89279 4.97238 5.00888 5.05322 5.13294 5.14984 5.18333 5.20678 5.28834 5.41363 5.48519 5.51298 5.54130 5.70479 5.71694 5.76516 5.84764 5.86887 6.22667 6.49677 6.68819 6.87148 7.38473 7.40320 8.92649 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.025833 B = 0.001867 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.623009 B =14990.699583 C =15862.052638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.340 6.340 3 C 0.105 3.895 4 C -0.163 4.163 5 C -0.079 4.079 6 C -0.108 4.108 7 C 0.005 3.995 8 C -0.148 4.148 9 C -0.148 4.148 10 C -0.129 4.129 11 C 0.505 3.495 12 O -0.570 6.570 13 N -0.719 5.719 14 C 0.131 3.869 15 C -0.102 4.102 16 C 0.022 3.978 17 C -0.540 4.540 18 H 0.067 0.933 19 C -0.005 4.005 20 N -0.935 5.935 21 Si 0.967 3.033 22 H -0.258 1.258 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.087 4.087 26 C -0.207 4.207 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.116 0.884 30 H 0.133 0.867 31 H 0.134 0.866 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.414 0.586 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.067 0.933 44 H 0.067 0.933 45 H -0.009 1.009 46 H -0.009 1.009 47 H 0.263 0.737 48 H 0.150 0.850 49 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.279 -31.475 -0.001 32.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.254 6.254 3 C 0.060 3.940 4 C -0.182 4.182 5 C -0.097 4.097 6 C -0.108 4.108 7 C 0.004 3.996 8 C -0.205 4.205 9 C -0.205 4.205 10 C -0.168 4.168 11 C 0.294 3.706 12 O -0.450 6.450 13 N -0.371 5.371 14 C 0.007 3.993 15 C -0.140 4.140 16 C -0.016 4.016 17 C -0.578 4.578 18 H 0.085 0.915 19 C -0.202 4.202 20 N -0.575 5.575 21 Si 0.792 3.208 22 H -0.181 1.181 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.105 4.105 26 C -0.225 4.225 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.134 0.866 30 H 0.151 0.849 31 H 0.152 0.848 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.251 0.749 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.010 0.990 46 H 0.010 0.990 47 H 0.071 0.929 48 H 0.167 0.833 49 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -7.245 -31.484 0.001 32.307 hybrid contribution -0.570 1.176 -0.001 1.307 sum -7.815 -30.308 0.000 31.300 Atomic orbital electron populations 1.23309 0.76623 1.05393 1.02205 1.86034 1.23333 1.27157 1.88865 1.19259 0.92677 0.84748 0.97296 1.20576 0.91822 0.98901 1.06854 1.20910 1.00414 0.90869 0.97548 1.19751 0.93822 0.94134 1.03117 1.19026 0.94095 0.89906 0.96558 1.22068 0.99500 1.02869 0.96022 1.22071 0.99495 1.02869 0.96028 1.21925 0.99195 0.89236 1.06453 1.21242 0.87560 0.86878 0.74967 1.90586 1.15849 1.87819 1.50737 1.46050 1.11105 1.05145 1.74804 1.21158 0.95563 0.82183 1.00406 1.21586 0.97223 0.93120 1.02027 1.18963 0.95334 0.92286 0.94996 1.21720 0.93920 0.91872 1.50277 0.91513 1.26033 0.97458 1.01884 0.94835 1.70122 1.16806 1.18820 1.51777 0.85364 0.79366 0.78496 0.77593 1.18147 1.20617 1.20623 1.21242 0.93815 0.98133 0.97278 1.21471 1.01024 0.91897 1.08147 0.91786 0.91780 0.86618 0.84861 0.84823 0.92406 0.91804 0.92860 0.92864 0.91800 0.92409 0.86381 0.86367 0.74892 0.93488 0.93482 0.91442 0.91434 0.99039 0.99035 0.92853 0.83261 0.83545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.34 -5.60 10.50 -92.37 -0.97 -6.57 16 3 C 0.11 1.82 6.69 22.51 0.15 1.97 16 4 C -0.16 -2.85 9.99 22.37 0.22 -2.63 16 5 C -0.08 -1.36 8.70 22.25 0.19 -1.17 16 6 C -0.11 -1.82 4.76 -19.85 -0.09 -1.91 16 7 C 0.00 0.09 0.60 -52.93 -0.03 0.05 16 8 C -0.15 -3.14 7.99 71.98 0.58 -2.56 16 9 C -0.15 -3.14 7.99 71.98 0.57 -2.57 16 10 C -0.13 -2.12 3.43 29.85 0.10 -2.02 16 11 C 0.51 12.84 7.24 87.66 0.63 13.48 16 12 O -0.57 -19.01 11.35 -3.03 -0.03 -19.05 16 13 N -0.72 -18.09 5.56 -463.07 -2.57 -20.67 16 14 C 0.13 4.48 5.67 86.38 0.49 4.97 16 15 C -0.10 -3.83 5.27 30.59 0.16 -3.67 16 16 C 0.02 1.13 4.97 29.85 0.15 1.28 16 17 C -0.54 -29.96 9.11 25.60 0.23 -29.73 16 18 H 0.07 3.48 7.74 -2.91 -0.02 3.45 16 19 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 20 N -0.93 -57.01 13.29 21.45 0.28 -56.72 16 21 Si 0.97 43.59 29.54 68.60 2.03 45.61 16 22 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 23 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 24 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 25 C -0.09 -1.24 8.97 22.25 0.20 -1.04 16 26 C -0.21 -2.95 9.04 22.37 0.20 -2.75 16 27 H 0.06 0.41 7.66 -2.39 -0.02 0.39 16 28 H 0.06 0.41 7.66 -2.39 -0.02 0.39 16 29 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.13 2.05 8.06 -2.91 -0.02 2.03 16 31 H 0.13 2.03 7.09 -2.91 -0.02 2.01 16 32 H 0.06 1.12 7.38 -2.39 -0.02 1.11 16 33 H 0.06 1.74 5.51 -2.39 -0.01 1.72 16 34 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 36 H 0.06 1.74 5.51 -2.39 -0.01 1.73 16 37 H 0.06 1.12 7.38 -2.39 -0.02 1.11 16 38 H 0.12 1.43 7.52 -2.38 -0.02 1.42 16 39 H 0.12 1.43 7.50 -2.39 -0.02 1.41 16 40 H 0.41 7.57 8.47 -92.71 -0.79 6.79 16 41 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 44 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 45 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 46 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 47 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 48 H 0.15 1.41 5.89 -2.91 -0.02 1.39 16 49 H 0.15 1.39 6.30 -2.91 -0.02 1.37 16 Total: -1.00 -71.74 388.50 4.23 -67.51 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: 0.15 Total: 16.70 kcal Atomic # 6 Polarization: -32.16 SS G_CDS: 5.34 Total: -26.82 kcal Atomic # 7 Polarization: -75.10 SS G_CDS: -2.29 Total: -77.39 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -1.00 Total: -25.62 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Total: -71.74 4.23 -67.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182439201.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.723 kcal (2) G-P(sol) polarization free energy of solvation -71.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds