Wall clock time and date at job start Tue Mar 31 2020 13:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35901 * 117.00045 * 2 1 4 4 C 1.38738 * 120.05722 * 180.02562 * 3 2 1 5 5 C 1.38146 * 119.94511 * 179.97438 * 4 3 2 6 6 C 1.38263 * 120.05402 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.94325 * 180.02562 * 6 5 4 8 8 H 1.09001 * 109.47335 * 359.97438 * 7 6 5 9 9 C 1.50702 * 109.47170 * 239.99413 * 7 6 5 10 10 O 1.21277 * 119.99654 * 346.84972 * 9 7 6 11 11 N 1.34771 * 120.00012 * 166.85209 * 9 7 6 12 12 C 1.46502 * 119.99926 * 176.41557 * 11 9 7 13 13 C 1.53000 * 109.47030 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.47199 * 179.97438 * 13 12 11 15 15 C 1.50693 * 109.47139 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00510 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99991 * 179.97438 * 15 14 13 18 18 N 1.31523 * 119.99958 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00381 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46709 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46868 * 119.99899 * 19 17 15 22 22 H 1.48497 * 109.47417 * 240.00567 * 19 17 15 23 23 C 1.53001 * 109.47429 * 119.99239 * 7 6 5 24 24 C 1.52992 * 109.47379 * 185.54183 * 23 7 6 25 25 C 1.53002 * 109.47357 * 305.54580 * 23 7 6 26 26 C 1.38261 * 120.11422 * 0.26603 * 6 5 4 27 27 C 1.38144 * 120.05450 * 359.46216 * 26 6 5 28 28 H 1.08994 * 109.46871 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46898 * 300.00089 * 1 2 3 30 30 H 1.08996 * 109.46944 * 59.99703 * 1 2 3 31 31 H 1.08001 * 120.02363 * 359.95095 * 4 3 2 32 32 H 1.07998 * 119.96739 * 180.02562 * 5 4 3 33 33 H 0.97005 * 119.99954 * 356.40891 * 11 9 7 34 34 H 1.08994 * 109.47136 * 299.99773 * 12 11 9 35 35 H 1.09002 * 109.47064 * 60.00233 * 12 11 9 36 36 H 1.08994 * 109.47282 * 300.00059 * 13 12 11 37 37 H 1.09009 * 109.47066 * 60.00339 * 13 12 11 38 38 H 1.09004 * 109.47226 * 300.00263 * 14 13 12 39 39 H 1.09004 * 109.46779 * 59.99933 * 14 13 12 40 40 H 0.96992 * 119.99778 * 179.97438 * 18 17 15 41 41 H 1.09000 * 109.47093 * 65.53851 * 23 7 6 42 42 H 1.08996 * 109.47363 * 67.23697 * 24 23 7 43 43 H 1.09005 * 109.47220 * 187.24516 * 24 23 7 44 44 H 1.09007 * 109.47101 * 307.23660 * 24 23 7 45 45 H 1.08994 * 109.47427 * 59.99262 * 25 23 7 46 46 H 1.08992 * 109.47166 * 180.02562 * 25 23 7 47 47 H 1.09000 * 109.46424 * 299.99681 * 25 23 7 48 48 H 1.08004 * 119.97682 * 179.71074 * 26 6 5 49 49 H 1.08006 * 120.03200 * 180.27388 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2849 -0.0005 5 6 4.0561 2.5170 -0.0011 6 6 3.3019 3.6758 -0.0005 7 6 3.9861 5.0185 -0.0017 8 1 5.0667 4.8758 -0.0024 9 6 3.5824 5.7891 1.2289 10 8 2.6462 5.4113 1.9009 11 7 4.2619 6.8979 1.5827 12 6 3.8217 7.6908 2.7333 13 6 4.7588 8.8862 2.9173 14 6 4.2987 9.7146 4.1186 15 6 5.2213 10.8923 4.2995 16 1 6.0524 11.0360 3.6249 17 6 5.0038 11.7872 5.3256 18 7 3.9914 11.6127 6.1468 19 14 6.1478 13.2468 5.5503 20 1 7.2007 13.2161 4.5036 21 1 5.3710 14.5070 5.4337 22 1 6.7808 13.1777 6.8918 23 6 3.5737 5.8000 -1.2508 24 6 4.3718 7.1033 -1.3236 25 6 3.8576 4.9578 -2.4962 26 6 1.9212 3.6048 0.0061 27 6 1.2916 2.3752 0.0010 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8899 31 1 4.0208 0.3799 -0.0002 32 1 5.1346 2.5750 -0.0019 33 1 5.0424 7.1710 1.0755 34 1 2.8063 8.0478 2.5615 35 1 3.8424 7.0719 3.6303 36 1 5.7740 8.5289 3.0893 37 1 4.7385 9.5053 2.0203 38 1 3.2835 10.0720 3.9462 39 1 4.3187 9.0958 5.0157 40 1 3.8387 12.2421 6.8688 41 1 2.5090 6.0282 -1.2016 42 1 5.4228 6.8762 -1.5019 43 1 3.9896 7.7183 -2.1384 44 1 4.2714 7.6439 -0.3824 45 1 3.2891 4.0293 -2.4443 46 1 3.5642 5.5147 -3.3860 47 1 4.9223 4.7296 -2.5454 48 1 1.3342 4.5114 0.0112 49 1 0.2129 2.3202 0.0017 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182992548.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:30 Heat of formation + Delta-G solvation = -74.882741 kcal Electronic energy + Delta-G solvation = -26536.161502 eV Core-core repulsion = 22848.683144 eV Total energy + Delta-G solvation = -3687.478358 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.76256 -39.72144 -37.74261 -35.87406 -35.40707 -33.29274 -31.27817 -31.16789 -31.00461 -28.25553 -27.61220 -26.77370 -25.96996 -23.16788 -22.96928 -21.70134 -20.78767 -20.68182 -19.53938 -18.32979 -17.18580 -16.58414 -16.13898 -15.96871 -15.93942 -15.46388 -15.17898 -14.70056 -14.46922 -14.44199 -13.96659 -13.87822 -13.68779 -13.52192 -12.95000 -12.73153 -12.68377 -12.40758 -12.28882 -12.24092 -11.89940 -11.85402 -11.70133 -11.39416 -11.13471 -11.05747 -10.98290 -10.92788 -10.74308 -10.68031 -10.57755 -9.87837 -9.79755 -9.36009 -9.11938 -9.04022 -8.72183 -8.38683 -8.20882 -6.03076 -4.06129 1.23177 1.31509 2.78391 3.06196 3.28948 3.34101 3.36819 3.40323 3.73731 4.41072 4.43152 4.53702 4.67636 4.69782 4.75762 4.87389 4.90923 5.01378 5.08895 5.17102 5.19745 5.28415 5.32763 5.33863 5.43285 5.45493 5.58845 5.66073 5.70137 5.74434 5.78690 5.90798 5.93266 6.07769 6.08890 6.14071 6.15717 6.26219 6.48897 6.53863 6.59030 6.61387 6.82887 6.99569 7.20856 7.62565 7.71790 7.74852 7.95815 8.36112 8.42084 9.00854 9.58160 11.08237 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.021474 B = 0.002235 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.617500 B =12523.322153 C =13323.064145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.123 3.877 4 C -0.156 4.156 5 C -0.073 4.073 6 C -0.099 4.099 7 C -0.061 4.061 8 H 0.099 0.901 9 C 0.513 3.487 10 O -0.535 6.535 11 N -0.726 5.726 12 C 0.115 3.885 13 C -0.121 4.121 14 C 0.024 3.976 15 C -0.521 4.521 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.894 5.894 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.081 4.081 24 C -0.168 4.168 25 C -0.144 4.144 26 C -0.038 4.038 27 C -0.210 4.210 28 H 0.098 0.902 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.399 0.601 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.261 0.739 41 H 0.075 0.925 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.071 0.929 45 H 0.059 0.941 46 H 0.056 0.944 47 H 0.056 0.944 48 H 0.125 0.875 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.660 -20.429 -18.945 27.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.079 3.921 4 C -0.175 4.175 5 C -0.092 4.092 6 C -0.100 4.100 7 C -0.082 4.082 8 H 0.117 0.883 9 C 0.298 3.702 10 O -0.412 6.412 11 N -0.378 5.378 12 C -0.008 4.008 13 C -0.159 4.159 14 C -0.014 4.014 15 C -0.560 4.560 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.533 5.533 19 Si 0.721 3.279 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.099 4.099 24 C -0.226 4.226 25 C -0.201 4.201 26 C -0.056 4.056 27 C -0.229 4.229 28 H 0.116 0.884 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.146 0.854 32 H 0.145 0.855 33 H 0.235 0.765 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.070 0.930 41 H 0.094 0.906 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.089 0.911 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.075 0.925 48 H 0.143 0.857 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.352 -20.795 -18.289 27.896 hybrid contribution 0.666 1.168 0.139 1.352 sum -2.686 -19.628 -18.151 26.868 Atomic orbital electron populations 1.23037 0.78485 1.03751 1.01478 1.86042 1.21339 1.27186 1.88876 1.19034 0.92382 0.84016 0.96713 1.20301 0.91302 0.98393 1.07498 1.20800 0.99549 0.90928 0.97878 1.19166 0.93623 0.93160 1.04044 1.20370 1.01359 0.92662 0.93857 0.88300 1.20420 0.83042 0.80712 0.85998 1.90704 1.29092 1.67639 1.53768 1.46493 1.31892 1.26573 1.32879 1.21647 0.99114 0.92677 0.87328 1.21887 0.97753 0.94671 1.01553 1.19032 0.96858 0.94012 0.91508 1.21239 1.12523 1.08954 1.13246 0.92586 1.25043 0.95457 0.98124 0.95925 1.69977 1.29070 1.36968 1.17252 0.86526 0.80841 0.82569 0.77996 1.19751 1.21010 1.20998 1.21035 1.00924 0.95003 0.92984 1.22202 1.00178 0.96794 1.03399 1.21832 1.01867 0.99871 0.96509 1.20741 0.93915 0.96959 0.93962 1.21201 0.99948 0.92286 1.09427 0.88382 0.92562 0.92700 0.85386 0.85482 0.76482 0.91847 0.91804 0.92751 0.92754 0.96306 0.96297 0.92980 0.90631 0.92150 0.91960 0.91072 0.92199 0.92502 0.92482 0.85745 0.85657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.39 10.50 -19.43 -0.20 -3.60 16 3 C 0.12 1.40 6.69 -39.21 -0.26 1.14 16 4 C -0.16 -1.67 9.99 -39.43 -0.39 -2.06 16 5 C -0.07 -0.76 9.66 -39.61 -0.38 -1.14 16 6 C -0.10 -1.13 3.03 -104.60 -0.32 -1.45 16 7 C -0.06 -0.64 1.99 -92.92 -0.19 -0.83 16 8 H 0.10 0.86 7.87 -51.93 -0.41 0.45 16 9 C 0.51 7.36 6.79 -10.99 -0.07 7.28 16 10 O -0.54 -9.78 14.68 5.56 0.08 -9.70 16 11 N -0.73 -10.08 4.30 -60.29 -0.26 -10.34 16 12 C 0.11 2.00 5.68 -4.04 -0.02 1.98 16 13 C -0.12 -2.33 5.27 -26.73 -0.14 -2.47 16 14 C 0.02 0.59 4.97 -27.89 -0.14 0.46 16 15 C -0.52 -14.49 9.11 -34.44 -0.31 -14.80 16 16 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 18 N -0.89 -26.79 13.29 55.43 0.74 -26.06 16 19 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 C -0.08 -0.73 2.24 -90.62 -0.20 -0.93 16 24 C -0.17 -1.42 8.69 37.15 0.32 -1.10 16 25 C -0.14 -1.10 8.86 37.16 0.33 -0.77 16 26 C -0.04 -0.46 7.84 -39.61 -0.31 -0.77 16 27 C -0.21 -2.35 9.04 -39.43 -0.36 -2.71 16 28 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.37 7.66 -51.93 -0.40 -0.02 16 30 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 31 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.13 1.01 7.94 -52.49 -0.42 0.59 16 33 H 0.40 4.51 6.60 -40.82 -0.27 4.24 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.05 1.00 8.14 -51.92 -0.42 0.57 16 38 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.08 0.76 7.60 -51.93 -0.39 0.37 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.70 4.93 -51.93 -0.26 0.44 16 45 H 0.06 0.50 7.02 -51.93 -0.36 0.14 16 46 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 47 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.12 1.56 7.25 -52.48 -0.38 1.18 16 49 H 0.13 1.16 6.30 -52.48 -0.33 0.83 16 LS Contribution 393.24 15.07 5.93 5.93 Total: -1.00 -33.13 393.24 -8.53 -41.66 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -8.23 Total: 1.20 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: -1.55 Total: -15.49 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: 0.48 Total: -36.40 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -0.12 Total: -13.30 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.13 -8.53 -41.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182992548.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.225 kcal (2) G-P(sol) polarization free energy of solvation -33.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds