Wall clock time and date at job start Tue Mar 31 2020 13:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35901 * 117.00045 * 2 1 4 4 C 1.38738 * 120.05722 * 180.02562 * 3 2 1 5 5 C 1.38146 * 119.94511 * 179.97438 * 4 3 2 6 6 C 1.38263 * 120.05402 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.94325 * 180.02562 * 6 5 4 8 8 H 1.09001 * 109.47335 * 359.97438 * 7 6 5 9 9 C 1.50702 * 109.47170 * 239.99413 * 7 6 5 10 10 O 1.21277 * 119.99654 * 346.84972 * 9 7 6 11 11 N 1.34771 * 120.00012 * 166.85209 * 9 7 6 12 12 C 1.46502 * 119.99926 * 176.41557 * 11 9 7 13 13 C 1.53000 * 109.47030 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.47199 * 179.97438 * 13 12 11 15 15 C 1.50693 * 109.47139 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00510 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99991 * 179.97438 * 15 14 13 18 18 N 1.31523 * 119.99958 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00381 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46709 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46868 * 119.99899 * 19 17 15 22 22 H 1.48497 * 109.47417 * 240.00567 * 19 17 15 23 23 C 1.53001 * 109.47429 * 119.99239 * 7 6 5 24 24 C 1.52992 * 109.47379 * 185.54183 * 23 7 6 25 25 C 1.53002 * 109.47357 * 305.54580 * 23 7 6 26 26 C 1.38261 * 120.11422 * 0.26603 * 6 5 4 27 27 C 1.38144 * 120.05450 * 359.46216 * 26 6 5 28 28 H 1.08994 * 109.46871 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46898 * 300.00089 * 1 2 3 30 30 H 1.08996 * 109.46944 * 59.99703 * 1 2 3 31 31 H 1.08001 * 120.02363 * 359.95095 * 4 3 2 32 32 H 1.07998 * 119.96739 * 180.02562 * 5 4 3 33 33 H 0.97005 * 119.99954 * 356.40891 * 11 9 7 34 34 H 1.08994 * 109.47136 * 299.99773 * 12 11 9 35 35 H 1.09002 * 109.47064 * 60.00233 * 12 11 9 36 36 H 1.08994 * 109.47282 * 300.00059 * 13 12 11 37 37 H 1.09009 * 109.47066 * 60.00339 * 13 12 11 38 38 H 1.09004 * 109.47226 * 300.00263 * 14 13 12 39 39 H 1.09004 * 109.46779 * 59.99933 * 14 13 12 40 40 H 0.96992 * 119.99778 * 179.97438 * 18 17 15 41 41 H 1.09000 * 109.47093 * 65.53851 * 23 7 6 42 42 H 1.08996 * 109.47363 * 67.23697 * 24 23 7 43 43 H 1.09005 * 109.47220 * 187.24516 * 24 23 7 44 44 H 1.09007 * 109.47101 * 307.23660 * 24 23 7 45 45 H 1.08994 * 109.47427 * 59.99262 * 25 23 7 46 46 H 1.08992 * 109.47166 * 180.02562 * 25 23 7 47 47 H 1.09000 * 109.46424 * 299.99681 * 25 23 7 48 48 H 1.08004 * 119.97682 * 179.71074 * 26 6 5 49 49 H 1.08006 * 120.03200 * 180.27388 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2849 -0.0005 5 6 4.0561 2.5170 -0.0011 6 6 3.3019 3.6758 -0.0005 7 6 3.9861 5.0185 -0.0017 8 1 5.0667 4.8758 -0.0024 9 6 3.5824 5.7891 1.2289 10 8 2.6462 5.4113 1.9009 11 7 4.2619 6.8979 1.5827 12 6 3.8217 7.6908 2.7333 13 6 4.7588 8.8862 2.9173 14 6 4.2987 9.7146 4.1186 15 6 5.2213 10.8923 4.2995 16 1 6.0524 11.0360 3.6249 17 6 5.0038 11.7872 5.3256 18 7 3.9914 11.6127 6.1468 19 14 6.1478 13.2468 5.5503 20 1 7.2007 13.2161 4.5036 21 1 5.3710 14.5070 5.4337 22 1 6.7808 13.1777 6.8918 23 6 3.5737 5.8000 -1.2508 24 6 4.3718 7.1033 -1.3236 25 6 3.8576 4.9578 -2.4962 26 6 1.9212 3.6048 0.0061 27 6 1.2916 2.3752 0.0010 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8899 31 1 4.0208 0.3799 -0.0002 32 1 5.1346 2.5750 -0.0019 33 1 5.0424 7.1710 1.0755 34 1 2.8063 8.0478 2.5615 35 1 3.8424 7.0719 3.6303 36 1 5.7740 8.5289 3.0893 37 1 4.7385 9.5053 2.0203 38 1 3.2835 10.0720 3.9462 39 1 4.3187 9.0958 5.0157 40 1 3.8387 12.2421 6.8688 41 1 2.5090 6.0282 -1.2016 42 1 5.4228 6.8762 -1.5019 43 1 3.9896 7.7183 -2.1384 44 1 4.2714 7.6439 -0.3824 45 1 3.2891 4.0293 -2.4443 46 1 3.5642 5.5147 -3.3860 47 1 4.9223 4.7296 -2.5454 48 1 1.3342 4.5114 0.0112 49 1 0.2129 2.3202 0.0017 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182992548.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:29 Heat of formation + Delta-G solvation = -93.911036 kcal Electronic energy + Delta-G solvation = -26536.986631 eV Core-core repulsion = 22848.683144 eV Total energy + Delta-G solvation = -3688.303487 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.69660 -40.64728 -38.64801 -36.94333 -36.67476 -35.15386 -32.98555 -32.01681 -31.82080 -29.32348 -28.48608 -27.78384 -27.06796 -24.90197 -23.79425 -22.54422 -22.32312 -21.77575 -20.60407 -19.09672 -18.56511 -18.17210 -17.21546 -16.98391 -16.69869 -16.62789 -16.49917 -16.13245 -15.63146 -15.50305 -15.11437 -14.75050 -14.58280 -14.35705 -14.27459 -13.80187 -13.75184 -13.58195 -13.43317 -13.41053 -12.97262 -12.85181 -12.78580 -12.56256 -12.54227 -12.35649 -12.14147 -11.86083 -11.83021 -11.70400 -11.66929 -11.55486 -11.44787 -11.21328 -10.69666 -10.56607 -10.01387 -9.89013 -9.03345 -8.19897 -6.31332 0.41209 0.46388 1.41691 1.41774 1.55092 1.64838 2.21799 2.39117 2.42587 2.85750 3.13939 3.58967 3.70101 3.91251 3.94224 3.99873 4.11650 4.21173 4.25188 4.30828 4.36022 4.39270 4.42013 4.52528 4.55407 4.58671 4.69372 4.72852 4.81718 4.87556 4.94279 4.98769 5.06310 5.08150 5.11750 5.16856 5.26761 5.31987 5.41571 5.43750 5.45754 5.47882 5.53573 5.70185 5.70527 5.82768 5.83998 6.21918 6.44447 6.60241 6.86679 7.28573 7.38395 8.92445 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.021474 B = 0.002235 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.617500 B =12523.322153 C =13323.064145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.334 6.334 3 C 0.113 3.887 4 C -0.164 4.164 5 C -0.071 4.071 6 C -0.110 4.110 7 C -0.050 4.050 8 H 0.128 0.872 9 C 0.511 3.489 10 O -0.580 6.580 11 N -0.713 5.713 12 C 0.129 3.871 13 C -0.101 4.101 14 C 0.023 3.977 15 C -0.538 4.538 16 H 0.068 0.932 17 C -0.006 4.006 18 N -0.936 5.936 19 Si 0.968 3.032 20 H -0.257 1.257 21 H -0.280 1.280 22 H -0.281 1.281 23 C -0.076 4.076 24 C -0.167 4.167 25 C -0.137 4.137 26 C -0.055 4.055 27 C -0.219 4.219 28 H 0.121 0.879 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.144 0.856 32 H 0.155 0.845 33 H 0.415 0.585 34 H 0.048 0.952 35 H 0.045 0.955 36 H 0.068 0.932 37 H 0.069 0.931 38 H -0.009 1.009 39 H -0.010 1.010 40 H 0.263 0.737 41 H 0.057 0.943 42 H 0.081 0.919 43 H 0.066 0.934 44 H 0.055 0.945 45 H 0.049 0.951 46 H 0.064 0.936 47 H 0.072 0.928 48 H 0.110 0.890 49 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.314 -20.755 -20.890 29.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.248 6.248 3 C 0.068 3.932 4 C -0.183 4.183 5 C -0.089 4.089 6 C -0.111 4.111 7 C -0.071 4.071 8 H 0.146 0.854 9 C 0.298 3.702 10 O -0.459 6.459 11 N -0.367 5.367 12 C 0.005 3.995 13 C -0.139 4.139 14 C -0.015 4.015 15 C -0.576 4.576 16 H 0.086 0.914 17 C -0.203 4.203 18 N -0.576 5.576 19 Si 0.792 3.208 20 H -0.181 1.181 21 H -0.206 1.206 22 H -0.207 1.207 23 C -0.095 4.095 24 C -0.224 4.224 25 C -0.194 4.194 26 C -0.073 4.073 27 C -0.238 4.238 28 H 0.139 0.861 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.162 0.838 32 H 0.173 0.827 33 H 0.255 0.745 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.009 0.991 39 H 0.008 0.992 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.100 0.900 43 H 0.085 0.915 44 H 0.074 0.926 45 H 0.068 0.932 46 H 0.083 0.917 47 H 0.091 0.909 48 H 0.128 0.872 49 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.980 -21.126 -20.275 29.298 hybrid contribution -0.159 1.204 0.751 1.428 sum -1.139 -19.923 -19.524 27.918 Atomic orbital electron populations 1.23292 0.76825 1.05474 1.01890 1.86023 1.23150 1.26873 1.88793 1.19245 0.92979 0.84250 0.96754 1.20620 0.91319 0.99307 1.07044 1.21102 1.00897 0.90197 0.96732 1.19314 0.93416 0.93973 1.04398 1.20395 1.02848 0.91766 0.92126 0.85376 1.21156 0.82079 0.80361 0.86578 1.90690 1.31026 1.68756 1.55450 1.46283 1.32429 1.26172 1.31812 1.21204 0.98018 0.92165 0.88106 1.21593 0.98381 0.94566 0.99352 1.18948 0.95397 0.94118 0.92990 1.21711 1.12975 1.09543 1.13382 0.91404 1.26052 0.97131 1.01483 0.95646 1.70125 1.31118 1.38364 1.18038 0.85354 0.78785 0.78367 0.78263 1.18052 1.20622 1.20657 1.21005 1.00029 0.95534 0.92946 1.22193 1.01409 0.96110 1.02712 1.21774 1.02731 0.99133 0.95780 1.20765 0.94642 0.96757 0.95125 1.21344 1.00709 0.92175 1.09568 0.86062 0.92660 0.91782 0.83840 0.82691 0.74521 0.93389 0.93664 0.91374 0.91194 0.99055 0.99174 0.92852 0.92482 0.89983 0.91483 0.92637 0.93163 0.91736 0.90875 0.87226 0.84637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.37 16 2 O -0.33 -6.84 10.50 -92.43 -0.97 -7.81 16 3 C 0.11 2.51 6.69 22.51 0.15 2.66 16 4 C -0.16 -3.28 9.99 22.37 0.22 -3.06 16 5 C -0.07 -1.33 9.66 22.25 0.22 -1.11 16 6 C -0.11 -2.41 3.03 -19.85 -0.06 -2.47 16 7 C -0.05 -0.98 1.99 -12.29 -0.02 -1.00 16 8 H 0.13 1.75 7.87 -2.39 -0.02 1.73 16 9 C 0.51 14.45 6.79 87.66 0.59 15.05 16 10 O -0.58 -21.80 14.68 -3.02 -0.04 -21.85 16 11 N -0.71 -19.16 4.30 -463.07 -1.99 -21.16 16 12 C 0.13 4.56 5.68 86.38 0.49 5.05 16 13 C -0.10 -3.85 5.27 30.59 0.16 -3.69 16 14 C 0.02 1.21 4.97 29.85 0.15 1.35 16 15 C -0.54 -29.91 9.11 25.60 0.23 -29.68 16 16 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 17 C -0.01 -0.33 5.46 84.65 0.46 0.14 16 18 N -0.94 -57.35 13.29 21.45 0.28 -57.06 16 19 Si 0.97 43.71 29.54 68.60 2.03 45.73 16 20 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 21 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 22 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 23 C -0.08 -1.26 2.24 -10.80 -0.02 -1.28 16 24 C -0.17 -2.41 8.69 71.98 0.63 -1.78 16 25 C -0.14 -1.77 8.86 71.98 0.64 -1.14 16 26 C -0.05 -1.35 7.84 22.25 0.17 -1.18 16 27 C -0.22 -4.98 9.04 22.37 0.20 -4.78 16 28 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.05 0.72 7.66 -2.39 -0.02 0.70 16 30 H 0.06 0.70 7.66 -2.39 -0.02 0.68 16 31 H 0.14 2.33 8.06 -2.91 -0.02 2.30 16 32 H 0.16 1.92 7.94 -2.91 -0.02 1.89 16 33 H 0.42 8.43 6.60 -92.70 -0.61 7.82 16 34 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.04 1.76 8.14 -2.39 -0.02 1.75 16 36 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 38 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 39 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 40 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 41 H 0.06 1.15 7.60 -2.39 -0.02 1.13 16 42 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 44 H 0.05 0.98 4.93 -2.38 -0.01 0.97 16 45 H 0.05 0.76 7.02 -2.39 -0.02 0.75 16 46 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.11 2.95 7.25 -2.91 -0.02 2.93 16 49 H 0.14 2.60 6.30 -2.91 -0.02 2.58 16 Total: -1.00 -73.54 393.24 4.94 -68.60 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: 0.31 Total: 19.09 kcal Atomic # 6 Polarization: -30.87 SS G_CDS: 5.32 Total: -25.55 kcal Atomic # 7 Polarization: -76.51 SS G_CDS: -1.71 Total: -78.22 kcal Atomic # 8 Polarization: -28.65 SS G_CDS: -1.01 Total: -29.66 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -73.54 4.94 -68.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182992548.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.311 kcal (2) G-P(sol) polarization free energy of solvation -73.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds