Wall clock time and date at job start Tue Mar 31 2020 12:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47137 * 2 1 4 4 C 1.52999 * 109.47137 * 180.02562 * 3 2 1 5 5 C 1.53008 * 109.47104 * 185.21550 * 4 3 2 6 6 H 1.08998 * 109.46511 * 53.38755 * 5 4 3 7 7 C 1.53003 * 109.47201 * 293.38659 * 5 4 3 8 8 C 1.52998 * 109.46919 * 174.81333 * 7 5 4 9 9 C 1.53001 * 109.46967 * 173.38642 * 5 4 3 10 10 O 1.45204 * 109.47025 * 185.82886 * 9 5 4 11 11 C 1.34642 * 117.00054 * 180.02562 * 10 9 5 12 12 O 1.21509 * 119.99731 * 359.97438 * 11 10 9 13 13 N 1.34772 * 119.99849 * 179.97438 * 11 10 9 14 14 C 1.39258 * 119.99610 * 184.92412 * 13 11 10 15 15 C 1.39473 * 119.83105 * 213.27065 * 14 13 11 16 16 C 1.36385 * 120.16963 * 179.72233 * 15 14 13 17 17 C 1.40873 * 119.82302 * 0.55204 * 16 15 14 18 18 C 1.41157 * 120.16220 * 179.69764 * 17 16 15 19 19 H 1.07991 * 120.00158 * 211.48921 * 18 17 16 20 20 C 1.39901 * 119.99842 * 31.49468 * 18 17 16 21 21 N 1.30883 * 119.99839 * 8.04447 * 20 18 17 22 22 Si 1.86793 * 119.99979 * 188.04618 * 20 18 17 23 23 H 1.48504 * 109.47340 * 59.99809 * 22 20 18 24 24 H 1.48501 * 109.47355 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47189 * 300.00139 * 22 20 18 26 26 C 1.40865 * 119.67332 * 359.72537 * 17 16 15 27 27 C 1.36382 * 119.82908 * 359.97438 * 26 17 16 28 28 H 1.08998 * 109.47010 * 299.99363 * 1 2 3 29 29 H 1.08993 * 109.47161 * 59.99543 * 1 2 3 30 30 H 1.09002 * 109.47204 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46640 * 240.00243 * 2 1 3 32 32 H 1.09002 * 109.47215 * 120.00333 * 2 1 3 33 33 H 1.09007 * 109.47186 * 60.00304 * 3 2 1 34 34 H 1.09002 * 109.47339 * 300.00257 * 3 2 1 35 35 H 1.09006 * 109.46712 * 65.22205 * 4 3 2 36 36 H 1.08996 * 109.47393 * 305.21624 * 4 3 2 37 37 H 1.09000 * 109.47010 * 54.80890 * 7 5 4 38 38 H 1.08995 * 109.46863 * 294.81342 * 7 5 4 39 39 H 1.09001 * 109.47227 * 305.38763 * 8 7 5 40 40 H 1.08997 * 109.46958 * 185.39366 * 8 7 5 41 41 H 1.08997 * 109.47248 * 65.38830 * 8 7 5 42 42 H 1.09001 * 109.47027 * 305.82495 * 9 5 4 43 43 H 1.08995 * 109.47046 * 65.82875 * 9 5 4 44 44 H 0.96999 * 120.00503 * 4.92696 * 13 11 10 45 45 H 1.07996 * 119.92026 * 0.02562 * 15 14 13 46 46 H 1.08000 * 120.08758 * 180.27258 * 16 15 14 47 47 H 0.96999 * 119.99821 * 180.02562 * 21 20 18 48 48 H 1.08001 * 120.08624 * 179.97438 * 26 17 16 49 49 H 1.07999 * 119.91692 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8790 0.1305 6 1 3.6236 3.3484 1.0019 7 6 3.7097 3.6685 -1.1267 8 6 4.1043 5.1352 -0.9425 9 6 5.6011 2.8671 0.2956 10 8 6.0701 4.2160 0.5577 11 6 7.3956 4.3800 0.7282 12 8 8.1399 3.4220 0.6604 13 7 7.8966 5.6067 0.9742 14 6 9.2746 5.7938 1.0487 15 6 9.7990 6.7486 1.9197 16 6 11.1477 6.9337 2.0024 17 6 12.0109 6.1655 1.1966 18 6 13.4076 6.3556 1.2717 19 1 14.0215 6.2012 0.3967 20 6 13.9967 6.7440 2.4798 21 7 13.2814 6.7786 3.5753 22 14 15.8041 7.2132 2.5292 23 1 16.0405 8.3688 1.6270 24 1 16.1816 7.5839 3.9168 25 1 16.6271 6.0605 2.0830 26 6 11.4734 5.2073 0.3151 27 6 10.1229 5.0293 0.2480 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8901 34 1 1.6766 1.9563 -0.8900 35 1 3.9329 1.0119 -0.9340 36 1 3.9337 0.8498 0.8386 37 1 2.6350 3.5998 -1.2955 38 1 4.2394 3.2547 -1.9847 39 1 3.6500 5.5220 -0.0303 40 1 3.7550 5.7154 -1.7966 41 1 5.1891 5.2132 -0.8694 42 1 5.8709 2.2200 1.1303 43 1 6.0628 2.4930 -0.6181 44 1 7.2975 6.3593 1.0994 45 1 9.1357 7.3395 2.5339 46 1 11.5526 7.6703 2.6805 47 1 13.6897 7.0482 4.4128 48 1 12.1291 4.6150 -0.3060 49 1 9.7093 4.2953 -0.4276 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193966722.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:27 Heat of formation + Delta-G solvation = -96.132986 kcal Electronic energy + Delta-G solvation = -26046.989075 eV Core-core repulsion = 22358.589237 eV Total energy + Delta-G solvation = -3688.399838 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.30315 -38.40055 -37.43258 -35.95644 -34.50067 -34.32525 -32.93927 -30.85535 -29.64350 -29.07536 -28.26560 -25.33121 -24.36717 -23.05832 -22.03432 -21.36448 -21.02190 -20.37476 -19.97998 -18.20904 -17.32919 -16.82943 -16.48601 -15.82155 -15.63844 -15.19634 -14.89735 -14.31522 -14.10794 -13.95557 -13.89999 -13.38173 -13.19398 -12.90650 -12.72011 -12.61831 -12.43303 -12.21768 -12.09438 -11.81472 -11.61321 -11.47519 -11.43555 -11.37509 -11.13874 -11.07816 -10.99284 -10.84723 -10.78499 -10.70211 -10.59658 -10.21594 -10.05163 -9.61736 -9.55453 -9.30643 -8.98837 -7.57994 -6.93844 -6.69039 -4.33703 2.46277 2.68729 3.06227 3.08364 3.09367 3.11160 3.49823 3.95484 4.29193 4.47102 4.57342 4.66622 4.69465 4.77036 4.87315 5.01400 5.09330 5.26165 5.29653 5.34578 5.41279 5.45351 5.49419 5.52661 5.64246 5.65158 5.69118 5.75121 5.83361 5.87255 5.96590 6.01964 6.07077 6.16260 6.18789 6.33093 6.39492 6.60908 6.73588 6.90181 7.04296 7.16972 7.25468 7.58694 7.69795 7.84674 8.02071 8.22243 8.26729 8.59144 8.84019 8.88877 9.00374 10.24749 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.037266 B = 0.001937 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.170098 B =14453.692819 C =14681.003789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.118 4.118 4 C -0.114 4.114 5 C -0.088 4.088 6 H 0.082 0.918 7 C -0.117 4.117 8 C -0.156 4.156 9 C 0.092 3.908 10 O -0.367 6.367 11 C 0.630 3.370 12 O -0.563 6.563 13 N -0.629 5.629 14 C 0.011 3.989 15 C -0.114 4.114 16 C -0.142 4.142 17 C 0.105 3.895 18 C -0.460 4.460 19 H 0.077 0.923 20 C 0.072 3.928 21 N -0.804 5.804 22 Si 0.913 3.087 23 H -0.265 1.265 24 H -0.279 1.279 25 H -0.266 1.266 26 C -0.207 4.207 27 C -0.081 4.081 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.052 0.948 40 H 0.045 0.955 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.402 0.598 45 H 0.093 0.907 46 H 0.124 0.876 47 H 0.280 0.720 48 H 0.097 0.903 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.686 -5.964 -5.224 22.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.156 4.156 4 C -0.152 4.152 5 C -0.107 4.107 6 H 0.100 0.900 7 C -0.154 4.154 8 C -0.213 4.213 9 C 0.017 3.983 10 O -0.282 6.282 11 C 0.383 3.617 12 O -0.452 6.452 13 N -0.278 5.278 14 C -0.080 4.080 15 C -0.134 4.134 16 C -0.162 4.162 17 C 0.103 3.897 18 C -0.490 4.490 19 H 0.095 0.905 20 C -0.145 4.145 21 N -0.431 5.431 22 Si 0.738 3.262 23 H -0.189 1.189 24 H -0.204 1.204 25 H -0.191 1.191 26 C -0.227 4.227 27 C -0.101 4.101 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.236 0.764 45 H 0.111 0.889 46 H 0.142 0.858 47 H 0.091 0.909 48 H 0.115 0.885 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -20.368 -6.457 -5.030 21.951 hybrid contribution 0.559 0.340 0.306 0.722 sum -19.809 -6.117 -4.724 21.264 Atomic orbital electron populations 1.21775 0.95971 1.01516 1.01780 1.21547 0.95782 0.96984 1.02078 1.21640 0.94856 0.96736 1.02342 1.21565 0.95761 0.95213 1.02629 1.21339 0.93019 0.96489 0.99832 0.89999 1.21598 1.00925 0.96109 0.96802 1.21939 1.03460 0.95207 1.00713 1.22944 0.93591 0.80105 1.01637 1.86322 1.23483 1.33597 1.84823 1.18291 0.80856 0.84605 0.77901 1.90988 1.58737 1.39389 1.56043 1.41634 1.06826 1.06810 1.72562 1.17017 0.78980 1.06739 1.05267 1.20212 0.95924 0.99600 0.97691 1.20934 0.90675 1.01630 1.02944 1.17694 0.93575 0.88476 0.89999 1.19500 0.92594 1.40571 0.96385 0.90473 1.25894 1.00534 0.92909 0.95130 1.69792 1.37940 1.35582 0.99743 0.86287 0.82022 0.79899 0.77986 1.18932 1.20396 1.19070 1.20724 0.93498 1.02094 1.06418 1.20294 0.93466 0.98628 0.97711 0.92777 0.92798 0.92881 0.92040 0.92014 0.91870 0.91651 0.91491 0.91491 0.91865 0.92146 0.92914 0.93607 0.90669 0.91439 0.91397 0.76433 0.88858 0.85800 0.90909 0.88498 0.87871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.91 37.16 0.37 -0.50 16 2 C -0.13 -0.78 5.93 -26.73 -0.16 -0.94 16 3 C -0.12 -0.78 4.88 -26.73 -0.13 -0.91 16 4 C -0.11 -0.86 4.67 -26.73 -0.12 -0.99 16 5 C -0.09 -0.81 2.21 -90.61 -0.20 -1.01 16 6 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 7 C -0.12 -1.04 5.29 -26.73 -0.14 -1.18 16 8 C -0.16 -1.58 9.07 37.16 0.34 -1.24 16 9 C 0.09 1.14 4.81 37.16 0.18 1.32 16 10 O -0.37 -5.42 6.94 -40.33 -0.28 -5.70 16 11 C 0.63 11.84 8.48 54.05 0.46 12.30 16 12 O -0.56 -12.60 13.78 -19.28 -0.27 -12.86 16 13 N -0.63 -11.66 5.32 -14.14 -0.08 -11.73 16 14 C 0.01 0.25 6.29 -83.56 -0.53 -0.27 16 15 C -0.11 -2.60 9.89 -39.79 -0.39 -2.99 16 16 C -0.14 -3.62 8.58 -39.25 -0.34 -3.96 16 17 C 0.11 2.81 5.53 -106.80 -0.59 2.22 16 18 C -0.46 -12.20 9.04 -37.85 -0.34 -12.54 16 19 H 0.08 1.95 7.86 -52.49 -0.41 1.54 16 20 C 0.07 1.80 5.28 -17.33 -0.09 1.71 16 21 N -0.80 -20.85 10.88 55.55 0.60 -20.24 16 22 Si 0.91 18.75 29.57 -169.99 -5.03 13.72 16 23 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 24 H -0.28 -5.59 7.11 56.52 0.40 -5.18 16 25 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 26 C -0.21 -5.25 9.74 -39.26 -0.38 -5.64 16 27 C -0.08 -1.95 8.57 -39.79 -0.34 -2.30 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 34 H 0.06 0.42 6.76 -51.93 -0.35 0.07 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.48 6.51 -51.93 -0.34 0.14 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.91 5.63 -51.93 -0.29 0.62 16 42 H 0.07 0.87 8.13 -51.93 -0.42 0.44 16 43 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.40 6.03 8.92 -40.82 -0.36 5.67 16 45 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 46 H 0.12 3.24 6.32 -52.49 -0.33 2.90 16 47 H 0.28 6.64 8.30 -40.82 -0.34 6.31 16 48 H 0.10 2.33 8.06 -52.49 -0.42 1.90 16 49 H 0.10 2.46 6.39 -52.49 -0.34 2.12 16 LS Contribution 392.74 15.07 5.92 5.92 Total: -1.00 -29.27 392.74 -9.86 -39.13 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -8.32 Total: 8.69 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: -2.42 Total: -16.92 kcal Atomic # 7 Polarization: -32.50 SS G_CDS: 0.53 Total: -31.98 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -0.55 Total: -18.57 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -29.27 -9.86 -39.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193966722.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.002 kcal (2) G-P(sol) polarization free energy of solvation -29.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds