Wall clock time and date at job start Tue Mar 31 2020 12:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47137 * 2 1 4 4 C 1.52999 * 109.47137 * 180.02562 * 3 2 1 5 5 C 1.53008 * 109.47104 * 185.21550 * 4 3 2 6 6 H 1.08998 * 109.46511 * 53.38755 * 5 4 3 7 7 C 1.53003 * 109.47201 * 293.38659 * 5 4 3 8 8 C 1.52998 * 109.46919 * 174.81333 * 7 5 4 9 9 C 1.53001 * 109.46967 * 173.38642 * 5 4 3 10 10 O 1.45204 * 109.47025 * 185.82886 * 9 5 4 11 11 C 1.34642 * 117.00054 * 180.02562 * 10 9 5 12 12 O 1.21509 * 119.99731 * 359.97438 * 11 10 9 13 13 N 1.34772 * 119.99849 * 179.97438 * 11 10 9 14 14 C 1.39258 * 119.99610 * 184.92412 * 13 11 10 15 15 C 1.39473 * 119.83105 * 213.27065 * 14 13 11 16 16 C 1.36385 * 120.16963 * 179.72233 * 15 14 13 17 17 C 1.40873 * 119.82302 * 0.55204 * 16 15 14 18 18 C 1.41157 * 120.16220 * 179.69764 * 17 16 15 19 19 H 1.07991 * 120.00158 * 211.48921 * 18 17 16 20 20 C 1.39901 * 119.99842 * 31.49468 * 18 17 16 21 21 N 1.30883 * 119.99839 * 8.04447 * 20 18 17 22 22 Si 1.86793 * 119.99979 * 188.04618 * 20 18 17 23 23 H 1.48504 * 109.47340 * 59.99809 * 22 20 18 24 24 H 1.48501 * 109.47355 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47189 * 300.00139 * 22 20 18 26 26 C 1.40865 * 119.67332 * 359.72537 * 17 16 15 27 27 C 1.36382 * 119.82908 * 359.97438 * 26 17 16 28 28 H 1.08998 * 109.47010 * 299.99363 * 1 2 3 29 29 H 1.08993 * 109.47161 * 59.99543 * 1 2 3 30 30 H 1.09002 * 109.47204 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46640 * 240.00243 * 2 1 3 32 32 H 1.09002 * 109.47215 * 120.00333 * 2 1 3 33 33 H 1.09007 * 109.47186 * 60.00304 * 3 2 1 34 34 H 1.09002 * 109.47339 * 300.00257 * 3 2 1 35 35 H 1.09006 * 109.46712 * 65.22205 * 4 3 2 36 36 H 1.08996 * 109.47393 * 305.21624 * 4 3 2 37 37 H 1.09000 * 109.47010 * 54.80890 * 7 5 4 38 38 H 1.08995 * 109.46863 * 294.81342 * 7 5 4 39 39 H 1.09001 * 109.47227 * 305.38763 * 8 7 5 40 40 H 1.08997 * 109.46958 * 185.39366 * 8 7 5 41 41 H 1.08997 * 109.47248 * 65.38830 * 8 7 5 42 42 H 1.09001 * 109.47027 * 305.82495 * 9 5 4 43 43 H 1.08995 * 109.47046 * 65.82875 * 9 5 4 44 44 H 0.96999 * 120.00503 * 4.92696 * 13 11 10 45 45 H 1.07996 * 119.92026 * 0.02562 * 15 14 13 46 46 H 1.08000 * 120.08758 * 180.27258 * 16 15 14 47 47 H 0.96999 * 119.99821 * 180.02562 * 21 20 18 48 48 H 1.08001 * 120.08624 * 179.97438 * 26 17 16 49 49 H 1.07999 * 119.91692 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8790 0.1305 6 1 3.6236 3.3484 1.0019 7 6 3.7097 3.6685 -1.1267 8 6 4.1043 5.1352 -0.9425 9 6 5.6011 2.8671 0.2956 10 8 6.0701 4.2160 0.5577 11 6 7.3956 4.3800 0.7282 12 8 8.1399 3.4220 0.6604 13 7 7.8966 5.6067 0.9742 14 6 9.2746 5.7938 1.0487 15 6 9.7990 6.7486 1.9197 16 6 11.1477 6.9337 2.0024 17 6 12.0109 6.1655 1.1966 18 6 13.4076 6.3556 1.2717 19 1 14.0215 6.2012 0.3967 20 6 13.9967 6.7440 2.4798 21 7 13.2814 6.7786 3.5753 22 14 15.8041 7.2132 2.5292 23 1 16.0405 8.3688 1.6270 24 1 16.1816 7.5839 3.9168 25 1 16.6271 6.0605 2.0830 26 6 11.4734 5.2073 0.3151 27 6 10.1229 5.0293 0.2480 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8901 34 1 1.6766 1.9563 -0.8900 35 1 3.9329 1.0119 -0.9340 36 1 3.9337 0.8498 0.8386 37 1 2.6350 3.5998 -1.2955 38 1 4.2394 3.2547 -1.9847 39 1 3.6500 5.5220 -0.0303 40 1 3.7550 5.7154 -1.7966 41 1 5.1891 5.2132 -0.8694 42 1 5.8709 2.2200 1.1303 43 1 6.0628 2.4930 -0.6181 44 1 7.2975 6.3593 1.0994 45 1 9.1357 7.3395 2.5339 46 1 11.5526 7.6703 2.6805 47 1 13.6897 7.0482 4.4128 48 1 12.1291 4.6150 -0.3060 49 1 9.7093 4.2953 -0.4276 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193966722.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:26 Heat of formation + Delta-G solvation = -109.775836 kcal Electronic energy + Delta-G solvation = -26047.580673 eV Core-core repulsion = 22358.589237 eV Total energy + Delta-G solvation = -3688.991436 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.78016 -39.84158 -38.67842 -37.19230 -36.20573 -35.09225 -34.72489 -31.58489 -31.49784 -30.85713 -29.20431 -26.97382 -25.41241 -23.76924 -23.63283 -22.89006 -21.96089 -21.76583 -21.01319 -19.71892 -19.22216 -18.27523 -17.85487 -17.17070 -16.93869 -16.43542 -16.03753 -15.72474 -15.18893 -15.01022 -14.88386 -14.54240 -14.45200 -14.19785 -14.04262 -13.92093 -13.65575 -13.38014 -13.28598 -13.21661 -13.03479 -12.82118 -12.77198 -12.51886 -12.36806 -12.04923 -11.99534 -11.89543 -11.69156 -11.60006 -11.49856 -11.42946 -11.34825 -11.32163 -11.16593 -10.92561 -10.79218 -9.50516 -8.82594 -8.56207 -6.31625 0.75009 1.10534 1.21049 1.41190 1.49024 1.52860 1.87688 2.24240 2.77798 3.22727 3.68317 3.73807 3.78391 3.91898 4.14383 4.24801 4.32167 4.35896 4.38415 4.40936 4.47547 4.54353 4.57317 4.74134 4.77705 4.87632 4.91069 4.96015 4.97326 5.06329 5.07092 5.12303 5.18526 5.19829 5.22993 5.26559 5.32835 5.35923 5.37791 5.43576 5.49402 5.55163 5.60213 5.66608 5.86146 5.98059 6.08043 6.34510 6.57262 6.64769 6.93835 6.97144 7.41417 8.39273 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.037266 B = 0.001937 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.170098 B =14453.692819 C =14681.003789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.114 4.114 4 C -0.110 4.110 5 C -0.078 4.078 6 H 0.085 0.915 7 C -0.115 4.115 8 C -0.156 4.156 9 C 0.085 3.915 10 O -0.349 6.349 11 C 0.634 3.366 12 O -0.601 6.601 13 N -0.621 5.621 14 C 0.025 3.975 15 C -0.110 4.110 16 C -0.158 4.158 17 C 0.075 3.925 18 C -0.497 4.497 19 H 0.076 0.924 20 C 0.031 3.969 21 N -0.835 5.835 22 Si 0.987 3.013 23 H -0.258 1.258 24 H -0.268 1.268 25 H -0.264 1.264 26 C -0.222 4.222 27 C -0.091 4.091 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.058 0.942 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.052 0.948 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.421 0.579 45 H 0.127 0.873 46 H 0.114 0.886 47 H 0.287 0.713 48 H 0.098 0.902 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.312 -5.742 -5.166 23.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.151 4.151 4 C -0.148 4.148 5 C -0.096 4.096 6 H 0.104 0.896 7 C -0.153 4.153 8 C -0.213 4.213 9 C 0.010 3.990 10 O -0.263 6.263 11 C 0.389 3.611 12 O -0.492 6.492 13 N -0.272 5.272 14 C -0.067 4.067 15 C -0.130 4.130 16 C -0.178 4.178 17 C 0.072 3.928 18 C -0.527 4.527 19 H 0.094 0.906 20 C -0.182 4.182 21 N -0.462 5.462 22 Si 0.808 3.192 23 H -0.182 1.182 24 H -0.192 1.192 25 H -0.188 1.188 26 C -0.242 4.242 27 C -0.111 4.111 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.101 0.899 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.259 0.741 45 H 0.145 0.855 46 H 0.131 0.869 47 H 0.098 0.902 48 H 0.116 0.884 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -22.060 -6.224 -4.981 23.457 hybrid contribution 0.863 0.196 0.247 0.919 sum -21.198 -6.028 -4.734 22.541 Atomic orbital electron populations 1.21775 0.95508 1.01807 1.01951 1.21546 0.96193 0.96702 1.02013 1.21605 0.93773 0.97078 1.02665 1.21550 0.96587 0.93921 1.02736 1.21330 0.90263 0.97771 1.00262 0.89619 1.21607 1.02122 0.95156 0.96386 1.21925 1.01840 0.96246 1.01308 1.23290 0.95745 0.78761 1.01178 1.86394 1.20750 1.35095 1.84074 1.18368 0.81862 0.83970 0.76927 1.90971 1.60081 1.40629 1.57480 1.41421 1.05675 1.07780 1.72365 1.17030 0.80636 1.05332 1.03727 1.20455 0.95461 0.99590 0.97524 1.20932 0.91833 1.01815 1.03211 1.18024 0.94364 0.89378 0.91029 1.19753 0.92944 1.42677 0.97288 0.90614 1.26740 1.05152 0.92125 0.94185 1.69847 1.39977 1.35976 1.00373 0.85177 0.76005 0.79576 0.78465 1.18227 1.19236 1.18831 1.20848 0.94291 1.02344 1.06752 1.20399 0.93345 0.99077 0.98302 0.92718 0.92511 0.92592 0.91998 0.92255 0.91730 0.91102 0.91282 0.91616 0.89907 0.92352 0.92624 0.92761 0.92910 0.91953 0.91903 0.74120 0.85485 0.86855 0.90202 0.88371 0.87825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.91 71.98 0.71 -0.75 16 2 C -0.13 -1.35 5.93 30.59 0.18 -1.17 16 3 C -0.11 -1.24 4.88 30.59 0.15 -1.09 16 4 C -0.11 -1.47 4.67 30.60 0.14 -1.32 16 5 C -0.08 -1.28 2.21 -10.79 -0.02 -1.30 16 6 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 7 C -0.12 -1.79 5.29 30.59 0.16 -1.63 16 8 C -0.16 -2.85 9.07 71.98 0.65 -2.19 16 9 C 0.08 2.02 4.81 71.98 0.35 2.36 16 10 O -0.35 -9.89 6.94 -55.51 -0.39 -10.27 16 11 C 0.63 23.29 8.48 129.79 1.10 24.39 16 12 O -0.60 -26.83 13.78 19.81 0.27 -26.55 16 13 N -0.62 -22.15 5.32 -429.08 -2.28 -24.43 16 14 C 0.03 1.12 6.29 38.56 0.24 1.36 16 15 C -0.11 -4.94 9.89 22.13 0.22 -4.72 16 16 C -0.16 -8.18 8.58 22.48 0.19 -7.99 16 17 C 0.07 4.10 5.53 -21.27 -0.12 3.98 16 18 C -0.50 -27.07 9.04 23.39 0.21 -26.86 16 19 H 0.08 3.97 7.86 -2.92 -0.02 3.95 16 20 C 0.03 1.59 5.28 85.24 0.45 2.04 16 21 N -0.83 -43.81 10.88 21.82 0.24 -43.58 16 22 Si 0.99 38.49 29.57 68.60 2.03 40.52 16 23 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 24 H -0.27 -9.87 7.11 99.48 0.71 -9.17 16 25 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 26 C -0.22 -11.61 9.74 22.48 0.22 -11.39 16 27 C -0.09 -4.45 8.57 22.14 0.19 -4.26 16 28 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 34 H 0.07 0.71 6.76 -2.39 -0.02 0.69 16 35 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 36 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.08 1.00 6.51 -2.39 -0.02 0.99 16 38 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.05 1.20 5.63 -2.39 -0.01 1.19 16 42 H 0.06 1.56 8.13 -2.39 -0.02 1.54 16 43 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.42 11.71 8.92 -92.71 -0.83 10.88 16 45 H 0.13 4.76 8.06 -2.91 -0.02 4.73 16 46 H 0.11 6.05 6.32 -2.91 -0.02 6.03 16 47 H 0.29 13.68 8.30 -92.71 -0.77 12.91 16 48 H 0.10 4.92 8.06 -2.91 -0.02 4.89 16 49 H 0.10 5.01 6.39 -2.91 -0.02 4.99 16 Total: -1.00 -63.76 392.74 5.00 -58.76 By element: Atomic # 1 Polarization: 35.99 SS G_CDS: 0.10 Total: 36.09 kcal Atomic # 6 Polarization: -35.57 SS G_CDS: 5.03 Total: -30.54 kcal Atomic # 7 Polarization: -65.96 SS G_CDS: -2.04 Total: -68.01 kcal Atomic # 8 Polarization: -36.71 SS G_CDS: -0.11 Total: -36.82 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 2.03 Total: 40.52 kcal Total: -63.76 5.00 -58.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193966722.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.020 kcal (2) G-P(sol) polarization free energy of solvation -63.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds