Wall clock time and date at job start Tue Mar 31 2020 12:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47571 * 2 1 4 4 C 1.52994 * 109.47223 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47223 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.47437 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.47437 * 180.02562 * 6 5 4 8 8 O 1.45197 * 109.47425 * 180.02562 * 7 6 5 9 9 C 1.34657 * 116.99999 * 180.02562 * 8 7 6 10 10 O 1.21506 * 120.00389 * 359.97438 * 9 8 7 11 11 N 1.34782 * 120.00009 * 180.02562 * 9 8 7 12 12 C 1.37194 * 119.99967 * 359.97438 * 11 9 8 13 13 H 1.08007 * 120.00002 * 34.02153 * 12 11 9 14 14 C 1.38884 * 120.00209 * 214.02098 * 12 11 9 15 15 N 1.31469 * 119.99744 * 23.47723 * 14 12 11 16 16 Si 1.86798 * 119.99976 * 203.47424 * 14 12 11 17 17 H 1.48498 * 109.47177 * 90.00454 * 16 14 12 18 18 H 1.48500 * 109.47037 * 210.00094 * 16 14 12 19 19 H 1.48497 * 109.47115 * 330.00082 * 16 14 12 20 20 C 1.46494 * 119.99910 * 179.97438 * 11 9 8 21 21 C 1.50695 * 109.47471 * 275.35165 * 20 11 9 22 22 C 1.38235 * 119.99775 * 93.75883 * 21 20 11 23 23 C 1.38234 * 120.00258 * 179.97438 * 22 21 20 24 24 C 1.38234 * 119.99805 * 359.97392 * 23 22 21 25 25 C 1.38236 * 120.00002 * 0.27914 * 24 23 22 26 26 C 1.38230 * 120.00384 * 273.74034 * 21 20 11 27 27 H 1.09005 * 109.47286 * 59.99681 * 1 2 3 28 28 H 1.08995 * 109.47321 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47143 * 300.00106 * 1 2 3 30 30 H 1.09007 * 109.46625 * 239.99939 * 2 1 3 31 31 H 1.08995 * 109.47258 * 120.00383 * 2 1 3 32 32 H 1.09001 * 109.46781 * 60.00259 * 3 2 1 33 33 H 1.08995 * 109.47142 * 300.00454 * 3 2 1 34 34 H 1.08997 * 109.47414 * 59.99941 * 4 3 2 35 35 H 1.09005 * 109.47363 * 300.00153 * 4 3 2 36 36 H 1.09001 * 109.46781 * 60.00140 * 5 4 3 37 37 H 1.08995 * 109.47142 * 300.00335 * 5 4 3 38 38 H 1.09001 * 109.46648 * 60.00515 * 6 5 4 39 39 H 1.08995 * 109.47602 * 300.00511 * 6 5 4 40 40 H 1.08997 * 109.46973 * 60.00128 * 7 6 5 41 41 H 1.09005 * 109.47076 * 300.00786 * 7 6 5 42 42 H 0.96999 * 119.99755 * 180.02562 * 15 14 12 43 43 H 1.09010 * 109.47052 * 155.35175 * 20 11 9 44 44 H 1.09003 * 109.47474 * 35.35912 * 20 11 9 45 45 H 1.07999 * 119.99989 * 359.97438 * 22 21 20 46 46 H 1.07994 * 120.00400 * 179.97438 * 23 22 21 47 47 H 1.08005 * 120.00153 * 180.02562 * 24 23 22 48 48 H 1.08003 * 119.99689 * 179.72297 * 25 24 23 49 49 H 1.08003 * 120.00070 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0801 2.8848 0.0000 6 6 5.6101 2.8848 0.0000 7 6 6.1202 4.3272 0.0013 8 8 7.5722 4.3272 0.0007 9 6 8.1836 5.5270 0.0022 10 8 7.5219 6.5461 0.0035 11 7 9.5295 5.5975 0.0012 12 6 10.2767 4.4469 -0.0008 13 1 9.9202 3.5724 -0.5250 14 6 11.4915 4.4065 0.6711 15 7 11.7246 5.2426 1.6586 16 14 12.7942 3.1643 0.1718 17 1 13.6721 3.7585 -0.8680 18 1 13.6095 2.7982 1.3578 19 1 12.1366 1.9486 -0.3711 20 6 10.1946 6.9028 0.0023 21 6 10.3035 7.4123 -1.4117 22 6 9.3296 8.2507 -1.9211 23 6 9.4297 8.7186 -3.2180 24 6 10.5040 8.3486 -4.0053 25 6 11.4752 7.5060 -3.4976 26 6 11.3775 7.0418 -2.1992 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8932 -0.5139 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 3.9330 0.9287 -0.8908 35 1 3.9337 0.9283 0.8891 36 1 3.7172 3.3981 0.8905 37 1 3.7164 3.3992 -0.8894 38 1 5.9734 2.3714 -0.8903 39 1 5.9735 2.3705 0.8896 40 1 5.7570 4.8403 0.8917 41 1 5.7568 4.8419 -0.8882 42 1 12.5732 5.2146 2.1276 43 1 11.1922 6.8019 0.4300 44 1 9.6133 7.6063 0.5984 45 1 8.4905 8.5401 -1.3059 46 1 8.6686 9.3732 -3.6162 47 1 10.5824 8.7145 -5.0184 48 1 12.3122 7.2134 -4.1142 49 1 12.1388 6.3874 -1.8009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194005361.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:07 Heat of formation + Delta-G solvation = -85.856437 kcal Electronic energy + Delta-G solvation = -26371.432702 eV Core-core repulsion = 22683.478489 eV Total energy + Delta-G solvation = -3687.954213 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.40056 -38.43703 -36.92196 -35.97537 -34.65013 -33.70802 -31.86159 -30.81138 -30.27505 -29.92856 -26.26655 -25.73184 -24.48042 -22.46908 -21.91259 -21.18925 -20.93079 -20.75927 -19.61924 -18.12145 -16.55229 -16.26221 -15.75952 -15.62660 -15.51197 -14.83149 -14.51944 -14.38517 -14.31561 -14.14674 -13.80743 -13.46523 -13.29781 -12.82880 -12.68815 -12.58182 -12.40626 -12.06295 -12.00439 -11.77700 -11.50604 -11.31303 -11.28859 -11.13164 -10.92150 -10.91054 -10.79882 -10.71045 -10.54991 -10.50729 -10.38909 -10.34328 -10.13219 -9.59956 -9.46580 -8.91971 -8.31917 -8.14945 -7.65002 -6.39903 -4.02998 1.91889 2.00926 3.13183 3.22491 3.25301 3.48128 4.07291 4.18623 4.40395 4.58962 4.71713 4.86806 4.97430 5.00536 5.12642 5.22554 5.29746 5.42986 5.48299 5.49582 5.55435 5.57461 5.59206 5.63791 5.72642 5.82372 5.85825 5.87639 5.89252 5.90945 6.03545 6.05530 6.11686 6.13320 6.18509 6.22324 6.39772 6.40022 6.46480 6.60941 6.73714 7.04061 7.05259 7.12649 7.36462 7.47692 7.59724 7.63254 7.87103 8.38608 9.07368 9.41324 9.96883 10.64941 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.011639 B = 0.002815 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.101406 B = 9944.149680 C =11462.838599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.119 4.119 5 C -0.115 4.115 6 C -0.118 4.118 7 C 0.088 3.912 8 O -0.359 6.359 9 C 0.609 3.391 10 O -0.627 6.627 11 N -0.422 5.422 12 C -0.323 4.323 13 H 0.094 0.906 14 C 0.039 3.961 15 N -0.864 5.864 16 Si 0.913 3.087 17 H -0.276 1.276 18 H -0.284 1.284 19 H -0.268 1.268 20 C 0.167 3.833 21 C -0.085 4.085 22 C -0.099 4.099 23 C -0.134 4.134 24 C -0.133 4.133 25 C -0.133 4.133 26 C -0.094 4.094 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.270 0.730 43 H 0.121 0.879 44 H 0.064 0.936 45 H 0.125 0.875 46 H 0.112 0.888 47 H 0.111 0.889 48 H 0.113 0.887 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.516 -3.700 -5.193 12.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.156 4.156 5 C -0.153 4.153 6 C -0.156 4.156 7 C 0.012 3.988 8 O -0.273 6.273 9 C 0.365 3.635 10 O -0.523 6.523 11 N -0.147 5.147 12 C -0.451 4.451 13 H 0.111 0.889 14 C -0.166 4.166 15 N -0.501 5.501 16 Si 0.740 3.260 17 H -0.202 1.202 18 H -0.210 1.210 19 H -0.193 1.193 20 C 0.045 3.955 21 C -0.087 4.087 22 C -0.118 4.118 23 C -0.152 4.152 24 C -0.151 4.151 25 C -0.151 4.151 26 C -0.113 4.113 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.138 0.862 44 H 0.083 0.917 45 H 0.143 0.857 46 H 0.130 0.870 47 H 0.129 0.871 48 H 0.131 0.869 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.597 -3.426 -5.021 12.217 hybrid contribution 0.610 -0.554 -0.238 0.857 sum -9.987 -3.979 -5.259 11.968 Atomic orbital electron populations 1.21783 0.96104 1.01411 1.01755 1.21547 0.95654 0.97174 1.02004 1.21633 0.95621 0.96537 1.02047 1.21588 0.95020 0.96735 1.02306 1.21488 0.94540 0.96953 1.02321 1.21543 0.94734 0.95812 1.03519 1.22640 0.77972 0.96773 1.01419 1.86295 1.20935 1.32330 1.87758 1.18380 0.84286 0.80976 0.79859 1.90776 1.65228 1.34982 1.61310 1.42290 0.99644 1.06300 1.66491 1.19498 1.01987 0.91703 1.31877 0.88881 1.25292 0.99605 0.98046 0.93643 1.69992 1.24553 1.38348 1.17191 0.86138 0.80694 0.80927 0.78277 1.20152 1.20977 1.19274 1.20395 1.01448 0.83218 0.90460 1.20652 0.93959 0.95766 0.98296 1.21276 0.98237 0.96909 0.95346 1.21048 0.98232 1.01210 0.94725 1.20982 0.95403 0.99512 0.99195 1.21055 0.99191 0.98983 0.95900 1.21138 0.98186 0.98350 0.93613 0.92827 0.92953 0.92805 0.92095 0.92068 0.92031 0.92068 0.91893 0.91839 0.91763 0.91833 0.91133 0.90945 0.92362 0.92556 0.92026 0.86174 0.91744 0.85724 0.86965 0.87090 0.86857 0.86034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.70 16 2 C -0.13 -0.98 5.93 -26.73 -0.16 -1.14 16 3 C -0.12 -1.03 5.21 -26.73 -0.14 -1.17 16 4 C -0.12 -1.15 5.21 -26.73 -0.14 -1.29 16 5 C -0.12 -1.29 5.21 -26.73 -0.14 -1.43 16 6 C -0.12 -1.69 5.59 -26.73 -0.15 -1.84 16 7 C 0.09 1.61 5.47 37.16 0.20 1.82 16 8 O -0.36 -8.48 9.31 -40.37 -0.38 -8.86 16 9 C 0.61 15.78 8.30 54.06 0.45 16.23 16 10 O -0.63 -16.52 14.93 -19.27 -0.29 -16.81 16 11 N -0.42 -10.97 2.54 -121.52 -0.31 -11.28 16 12 C -0.32 -8.50 8.97 -14.91 -0.13 -8.64 16 13 H 0.09 2.48 7.69 -52.48 -0.40 2.07 16 14 C 0.04 0.99 4.88 -17.47 -0.09 0.90 16 15 N -0.86 -22.62 11.43 55.49 0.63 -21.98 16 16 Si 0.91 19.61 29.61 -169.99 -5.03 14.58 16 17 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 18 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 19 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 20 C 0.17 4.01 5.03 -5.20 -0.03 3.99 16 21 C -0.09 -1.83 5.42 -104.63 -0.57 -2.40 16 22 C -0.10 -1.98 9.39 -39.58 -0.37 -2.35 16 23 C -0.13 -2.29 10.05 -39.58 -0.40 -2.69 16 24 C -0.13 -2.12 10.05 -39.58 -0.40 -2.52 16 25 C -0.13 -2.27 10.05 -39.58 -0.40 -2.66 16 26 C -0.09 -1.87 9.72 -39.58 -0.38 -2.26 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.27 6.63 8.31 -40.82 -0.34 6.30 16 43 H 0.12 3.00 5.38 -51.92 -0.28 2.72 16 44 H 0.06 1.57 7.51 -51.93 -0.39 1.18 16 45 H 0.12 2.57 7.49 -52.49 -0.39 2.17 16 46 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 47 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 48 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 49 H 0.12 2.46 8.06 -52.48 -0.42 2.03 16 LS Contribution 404.28 15.07 6.09 6.09 Total: -1.00 -29.13 404.28 -10.38 -39.52 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -8.63 Total: 6.91 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -2.47 Total: -8.16 kcal Atomic # 7 Polarization: -33.59 SS G_CDS: 0.32 Total: -33.27 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -0.66 Total: -25.66 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.03 Total: 14.58 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -29.13 -10.38 -39.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194005361.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.341 kcal (2) G-P(sol) polarization free energy of solvation -29.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds