Wall clock time and date at job start Tue Mar 31 2020 12:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47571 * 2 1 4 4 C 1.52994 * 109.47223 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47223 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.47437 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.47437 * 180.02562 * 6 5 4 8 8 O 1.45197 * 109.47425 * 180.02562 * 7 6 5 9 9 C 1.34657 * 116.99999 * 180.02562 * 8 7 6 10 10 O 1.21506 * 120.00389 * 359.97438 * 9 8 7 11 11 N 1.34782 * 120.00009 * 180.02562 * 9 8 7 12 12 C 1.37194 * 119.99967 * 359.97438 * 11 9 8 13 13 H 1.08007 * 120.00002 * 34.02153 * 12 11 9 14 14 C 1.38884 * 120.00209 * 214.02098 * 12 11 9 15 15 N 1.31469 * 119.99744 * 23.47723 * 14 12 11 16 16 Si 1.86798 * 119.99976 * 203.47424 * 14 12 11 17 17 H 1.48498 * 109.47177 * 90.00454 * 16 14 12 18 18 H 1.48500 * 109.47037 * 210.00094 * 16 14 12 19 19 H 1.48497 * 109.47115 * 330.00082 * 16 14 12 20 20 C 1.46494 * 119.99910 * 179.97438 * 11 9 8 21 21 C 1.50695 * 109.47471 * 275.35165 * 20 11 9 22 22 C 1.38235 * 119.99775 * 93.75883 * 21 20 11 23 23 C 1.38234 * 120.00258 * 179.97438 * 22 21 20 24 24 C 1.38234 * 119.99805 * 359.97392 * 23 22 21 25 25 C 1.38236 * 120.00002 * 0.27914 * 24 23 22 26 26 C 1.38230 * 120.00384 * 273.74034 * 21 20 11 27 27 H 1.09005 * 109.47286 * 59.99681 * 1 2 3 28 28 H 1.08995 * 109.47321 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47143 * 300.00106 * 1 2 3 30 30 H 1.09007 * 109.46625 * 239.99939 * 2 1 3 31 31 H 1.08995 * 109.47258 * 120.00383 * 2 1 3 32 32 H 1.09001 * 109.46781 * 60.00259 * 3 2 1 33 33 H 1.08995 * 109.47142 * 300.00454 * 3 2 1 34 34 H 1.08997 * 109.47414 * 59.99941 * 4 3 2 35 35 H 1.09005 * 109.47363 * 300.00153 * 4 3 2 36 36 H 1.09001 * 109.46781 * 60.00140 * 5 4 3 37 37 H 1.08995 * 109.47142 * 300.00335 * 5 4 3 38 38 H 1.09001 * 109.46648 * 60.00515 * 6 5 4 39 39 H 1.08995 * 109.47602 * 300.00511 * 6 5 4 40 40 H 1.08997 * 109.46973 * 60.00128 * 7 6 5 41 41 H 1.09005 * 109.47076 * 300.00786 * 7 6 5 42 42 H 0.96999 * 119.99755 * 180.02562 * 15 14 12 43 43 H 1.09010 * 109.47052 * 155.35175 * 20 11 9 44 44 H 1.09003 * 109.47474 * 35.35912 * 20 11 9 45 45 H 1.07999 * 119.99989 * 359.97438 * 22 21 20 46 46 H 1.07994 * 120.00400 * 179.97438 * 23 22 21 47 47 H 1.08005 * 120.00153 * 180.02562 * 24 23 22 48 48 H 1.08003 * 119.99689 * 179.72297 * 25 24 23 49 49 H 1.08003 * 120.00070 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0801 2.8848 0.0000 6 6 5.6101 2.8848 0.0000 7 6 6.1202 4.3272 0.0013 8 8 7.5722 4.3272 0.0007 9 6 8.1836 5.5270 0.0022 10 8 7.5219 6.5461 0.0035 11 7 9.5295 5.5975 0.0012 12 6 10.2767 4.4469 -0.0008 13 1 9.9202 3.5724 -0.5250 14 6 11.4915 4.4065 0.6711 15 7 11.7246 5.2426 1.6586 16 14 12.7942 3.1643 0.1718 17 1 13.6721 3.7585 -0.8680 18 1 13.6095 2.7982 1.3578 19 1 12.1366 1.9486 -0.3711 20 6 10.1946 6.9028 0.0023 21 6 10.3035 7.4123 -1.4117 22 6 9.3296 8.2507 -1.9211 23 6 9.4297 8.7186 -3.2180 24 6 10.5040 8.3486 -4.0053 25 6 11.4752 7.5060 -3.4976 26 6 11.3775 7.0418 -2.1992 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8932 -0.5139 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 3.9330 0.9287 -0.8908 35 1 3.9337 0.9283 0.8891 36 1 3.7172 3.3981 0.8905 37 1 3.7164 3.3992 -0.8894 38 1 5.9734 2.3714 -0.8903 39 1 5.9735 2.3705 0.8896 40 1 5.7570 4.8403 0.8917 41 1 5.7568 4.8419 -0.8882 42 1 12.5732 5.2146 2.1276 43 1 11.1922 6.8019 0.4300 44 1 9.6133 7.6063 0.5984 45 1 8.4905 8.5401 -1.3059 46 1 8.6686 9.3732 -3.6162 47 1 10.5824 8.7145 -5.0184 48 1 12.3122 7.2134 -4.1142 49 1 12.1388 6.3874 -1.8009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194005361.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:06 Heat of formation + Delta-G solvation = -97.553377 kcal Electronic energy + Delta-G solvation = -26371.939920 eV Core-core repulsion = 22683.478489 eV Total energy + Delta-G solvation = -3688.461430 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.26283 -39.97003 -38.16268 -37.33762 -36.53772 -34.74146 -33.76232 -32.40603 -31.70577 -30.96684 -27.75338 -27.23710 -26.16573 -23.53911 -23.35357 -22.52423 -21.98913 -21.70478 -21.43248 -20.02024 -18.29370 -17.65455 -17.44938 -17.29713 -16.80455 -16.44654 -16.03497 -15.81389 -15.62411 -15.41003 -14.95332 -14.70353 -14.59319 -14.22202 -13.98275 -13.87367 -13.59690 -13.35015 -13.23256 -13.22462 -13.12466 -12.78429 -12.63762 -12.58070 -12.25284 -12.14079 -12.04197 -11.94172 -11.79050 -11.75586 -11.61971 -11.50985 -11.33221 -11.30987 -11.28701 -10.87329 -9.75407 -9.64373 -9.61588 -8.35851 -6.07160 0.45713 0.56966 1.41194 1.45788 1.56816 1.76733 2.10437 2.37937 2.92061 3.05856 3.59803 3.88572 3.96566 4.03435 4.05688 4.09404 4.11262 4.22840 4.25224 4.34836 4.36089 4.36652 4.46297 4.54784 4.63308 4.67598 4.72383 4.82578 4.83834 4.94287 4.98075 4.98759 5.09778 5.11461 5.17138 5.19897 5.25567 5.26036 5.27803 5.39753 5.45335 5.49743 5.54394 5.62238 5.63938 5.65939 5.90062 5.95484 6.20079 6.37112 7.07225 7.42209 7.99275 8.69646 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.011639 B = 0.002815 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.101406 B = 9944.149680 C =11462.838599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.118 4.118 4 C -0.115 4.115 5 C -0.108 4.108 6 C -0.108 4.108 7 C 0.082 3.918 8 O -0.374 6.374 9 C 0.596 3.404 10 O -0.643 6.643 11 N -0.430 5.430 12 C -0.347 4.347 13 H 0.084 0.916 14 C 0.007 3.993 15 N -0.891 5.891 16 Si 0.981 3.019 17 H -0.263 1.263 18 H -0.280 1.280 19 H -0.265 1.265 20 C 0.174 3.826 21 C -0.110 4.110 22 C -0.118 4.118 23 C -0.130 4.130 24 C -0.119 4.119 25 C -0.127 4.127 26 C -0.111 4.111 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.054 0.946 41 H 0.057 0.943 42 H 0.275 0.725 43 H 0.106 0.894 44 H 0.044 0.956 45 H 0.106 0.894 46 H 0.143 0.857 47 H 0.156 0.844 48 H 0.147 0.853 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.300 -4.335 -7.578 13.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.156 4.156 4 C -0.153 4.153 5 C -0.146 4.146 6 C -0.145 4.145 7 C 0.007 3.993 8 O -0.288 6.288 9 C 0.352 3.648 10 O -0.541 6.541 11 N -0.155 5.155 12 C -0.474 4.474 13 H 0.102 0.898 14 C -0.196 4.196 15 N -0.528 5.528 16 Si 0.803 3.197 17 H -0.188 1.188 18 H -0.205 1.205 19 H -0.189 1.189 20 C 0.052 3.948 21 C -0.112 4.112 22 C -0.136 4.136 23 C -0.147 4.147 24 C -0.137 4.137 25 C -0.145 4.145 26 C -0.130 4.130 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.124 0.876 44 H 0.062 0.938 45 H 0.124 0.876 46 H 0.161 0.839 47 H 0.174 0.826 48 H 0.165 0.835 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.395 -4.059 -7.407 13.394 hybrid contribution 0.503 -0.298 0.502 0.770 sum -9.892 -4.357 -6.906 12.826 Atomic orbital electron populations 1.21781 0.95465 1.01902 1.01892 1.21545 0.96237 0.96563 1.02056 1.21604 0.94568 0.97182 1.02214 1.21553 0.95911 0.95371 1.02431 1.21463 0.91948 0.98373 1.02813 1.21548 0.96790 0.92770 1.03428 1.23029 0.75410 0.99663 1.01231 1.86287 1.23688 1.31327 1.87502 1.18639 0.84572 0.81498 0.80128 1.90733 1.65583 1.35554 1.62214 1.42559 0.99877 1.06907 1.66171 1.19589 1.02943 0.91924 1.32903 0.89785 1.26108 1.00771 0.99837 0.92908 1.70075 1.25211 1.39736 1.17807 0.85129 0.77847 0.78536 0.78147 1.18820 1.20531 1.18897 1.20249 0.99816 0.82290 0.92464 1.20447 0.95856 0.97690 0.97175 1.21222 0.97651 0.97825 0.96947 1.21400 0.99356 1.00727 0.93247 1.21477 0.93747 0.97724 1.00764 1.21430 1.00335 0.98060 0.94633 1.21141 0.97601 0.99120 0.95124 0.92654 0.92324 0.92724 0.91996 0.92100 0.91958 0.91829 0.91673 0.91861 0.91447 0.91221 0.90965 0.91259 0.92804 0.92474 0.91534 0.87594 0.93782 0.87596 0.83887 0.82618 0.83486 0.87209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.91 71.98 0.71 -1.21 16 2 C -0.13 -1.79 5.93 30.59 0.18 -1.61 16 3 C -0.12 -1.85 5.21 30.59 0.16 -1.69 16 4 C -0.12 -2.09 5.21 30.59 0.16 -1.93 16 5 C -0.11 -2.34 5.21 30.59 0.16 -2.18 16 6 C -0.11 -3.08 5.59 30.59 0.17 -2.91 16 7 C 0.08 3.09 5.47 71.98 0.39 3.49 16 8 O -0.37 -18.40 9.31 -55.67 -0.52 -18.92 16 9 C 0.60 32.39 8.30 129.79 1.08 33.47 16 10 O -0.64 -35.66 14.93 19.82 0.30 -35.36 16 11 N -0.43 -23.45 2.54 -768.77 -1.96 -25.41 16 12 C -0.35 -18.85 8.97 84.01 0.75 -18.10 16 13 H 0.08 4.62 7.69 -2.91 -0.02 4.60 16 14 C 0.01 0.34 4.88 84.90 0.41 0.75 16 15 N -0.89 -47.91 11.43 21.65 0.25 -47.67 16 16 Si 0.98 40.22 29.61 68.60 2.03 42.25 16 17 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 18 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 19 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 20 C 0.17 8.86 5.03 85.63 0.43 9.29 16 21 C -0.11 -4.90 5.42 -19.87 -0.11 -5.01 16 22 C -0.12 -4.78 9.39 22.27 0.21 -4.57 16 23 C -0.13 -4.13 10.05 22.27 0.22 -3.90 16 24 C -0.12 -3.34 10.05 22.27 0.22 -3.11 16 25 C -0.13 -3.95 10.05 22.27 0.22 -3.72 16 26 C -0.11 -4.40 9.72 22.27 0.22 -4.19 16 27 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 36 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 42 H 0.27 13.75 8.31 -92.71 -0.77 12.98 16 43 H 0.11 5.62 5.38 -2.38 -0.01 5.60 16 44 H 0.04 2.32 7.51 -2.39 -0.02 2.30 16 45 H 0.11 4.60 7.49 -2.91 -0.02 4.58 16 46 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 47 H 0.16 3.05 8.06 -2.91 -0.02 3.02 16 48 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 49 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 Total: -1.00 -65.35 404.28 6.60 -58.76 By element: Atomic # 1 Polarization: 32.58 SS G_CDS: 0.89 Total: 33.47 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: 5.60 Total: -7.13 kcal Atomic # 7 Polarization: -71.36 SS G_CDS: -1.71 Total: -73.07 kcal Atomic # 8 Polarization: -54.06 SS G_CDS: -0.22 Total: -54.28 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 2.03 Total: 42.25 kcal Total: -65.35 6.60 -58.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194005361.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.795 kcal (2) G-P(sol) polarization free energy of solvation -65.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds