Wall clock time and date at job start Tue Mar 31 2020 12:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47061 * 2 1 4 4 C 1.53002 * 109.46974 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.46714 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.46801 * 180.02562 * 5 4 3 7 7 C 1.53004 * 109.47310 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47310 * 180.02562 * 7 6 5 9 9 O 1.45198 * 109.46777 * 180.02562 * 8 7 6 10 10 C 1.34648 * 116.99842 * 179.97438 * 9 8 7 11 11 O 1.21509 * 119.99867 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00226 * 179.97438 * 10 9 8 13 13 C 1.39260 * 120.00025 * 185.18680 * 12 10 9 14 14 C 1.39472 * 119.83276 * 324.03812 * 13 12 10 15 15 C 1.36373 * 120.17191 * 180.27642 * 14 13 12 16 16 C 1.40871 * 119.82308 * 359.48716 * 15 14 13 17 17 C 1.41160 * 120.16515 * 180.23264 * 16 15 14 18 18 H 1.07995 * 120.00242 * 205.06635 * 17 16 15 19 19 C 1.39897 * 120.00088 * 25.06509 * 17 16 15 20 20 N 1.30881 * 119.99896 * 17.73205 * 19 17 16 21 21 Si 1.86802 * 120.00041 * 197.73833 * 19 17 16 22 22 H 1.48500 * 109.47299 * 94.98346 * 21 19 17 23 23 H 1.48504 * 109.46920 * 214.97886 * 21 19 17 24 24 H 1.48493 * 109.47036 * 334.97712 * 21 19 17 25 25 C 1.40862 * 119.67298 * 0.53095 * 16 15 14 26 26 C 1.36380 * 119.82842 * 359.72241 * 25 16 15 27 27 H 1.08997 * 109.47167 * 60.00235 * 1 2 3 28 28 H 1.09010 * 109.46930 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47457 * 299.99730 * 1 2 3 30 30 H 1.09001 * 109.47091 * 239.99693 * 2 1 3 31 31 H 1.09000 * 109.47357 * 120.00258 * 2 1 3 32 32 H 1.09007 * 109.47224 * 60.00292 * 3 2 1 33 33 H 1.08997 * 109.47353 * 299.99564 * 3 2 1 34 34 H 1.09000 * 109.46965 * 60.00862 * 4 3 2 35 35 H 1.08997 * 109.47519 * 299.99927 * 4 3 2 36 36 H 1.08993 * 109.47432 * 60.00541 * 5 4 3 37 37 H 1.08997 * 109.47385 * 299.99801 * 5 4 3 38 38 H 1.09002 * 109.47554 * 59.99825 * 6 5 4 39 39 H 1.09000 * 109.47357 * 300.00137 * 6 5 4 40 40 H 1.09002 * 109.46831 * 59.99533 * 7 6 5 41 41 H 1.08997 * 109.46838 * 299.99996 * 7 6 5 42 42 H 1.08993 * 109.46994 * 60.00047 * 8 7 6 43 43 H 1.09007 * 109.46620 * 299.99853 * 8 7 6 44 44 H 0.97001 * 120.00155 * 5.18587 * 12 10 9 45 45 H 1.08004 * 119.91822 * 0.02562 * 14 13 12 46 46 H 1.08000 * 120.09215 * 179.72378 * 15 14 13 47 47 H 0.96994 * 120.00232 * 180.02562 * 20 19 17 48 48 H 1.08000 * 120.08797 * 179.69174 * 25 16 15 49 49 H 1.07993 * 119.91381 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0799 2.8850 0.0013 6 6 5.6099 2.8850 0.0013 7 6 6.1200 4.3275 0.0013 8 6 7.6500 4.3275 0.0006 9 8 8.1339 5.6965 0.0013 10 6 9.4688 5.8730 0.0013 11 8 10.2090 4.9093 0.0014 12 7 9.9839 7.1183 0.0014 13 6 11.3599 7.3027 -0.1076 14 6 12.2313 6.3999 0.5015 15 6 13.5800 6.5769 0.4040 16 6 14.0924 7.6691 -0.3234 17 6 15.4872 7.8565 -0.4331 18 1 15.8869 8.8433 -0.6138 19 6 16.3518 6.7638 -0.3078 20 7 15.8902 5.5459 -0.4368 21 14 18.1650 7.0430 0.0438 22 1 18.4059 6.9495 1.5062 23 1 18.9699 6.0106 -0.6573 24 1 18.5608 8.3907 -0.4380 25 6 13.2060 8.5769 -0.9354 26 6 11.8597 8.3896 -0.8247 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5137 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6767 1.9563 -0.8900 34 1 3.9337 0.9286 -0.8892 35 1 3.9330 0.9288 0.8908 36 1 3.7163 3.3985 0.8912 37 1 3.7170 3.3991 -0.8887 38 1 5.9733 2.3716 -0.8889 39 1 5.9733 2.3708 0.8910 40 1 5.7566 4.8414 0.8913 41 1 5.7567 4.8413 -0.8887 42 1 8.0129 3.8139 -0.8895 43 1 8.0136 3.8135 0.8905 44 1 9.3962 7.8863 0.0773 45 1 11.8369 5.5606 1.0552 46 1 14.2535 5.8796 0.8798 47 1 16.4895 4.7883 -0.3495 48 1 13.5916 9.4193 -1.4904 49 1 11.1789 9.0849 -1.2929 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194743655.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:32 Heat of formation + Delta-G solvation = -104.469060 kcal Electronic energy + Delta-G solvation = -24844.003995 eV Core-core repulsion = 21155.242678 eV Total energy + Delta-G solvation = -3688.761317 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.17382 -38.00977 -37.23789 -36.19555 -34.80049 -34.46466 -32.99550 -31.72494 -29.51640 -29.07725 -28.05085 -25.29653 -24.39125 -22.21424 -21.64456 -21.34920 -21.18097 -21.06016 -20.01128 -18.20757 -17.32399 -16.72344 -16.56222 -16.20936 -15.67575 -15.28713 -15.05656 -14.40944 -14.17608 -14.09141 -13.94414 -13.55738 -13.31920 -12.91230 -12.73946 -12.59455 -12.48380 -12.15105 -12.08253 -11.84930 -11.77439 -11.54576 -11.42007 -11.34309 -11.18572 -11.15004 -10.98083 -10.92634 -10.79533 -10.71345 -10.53354 -10.30439 -10.13968 -9.94591 -9.61057 -9.26045 -8.74560 -7.53967 -7.06276 -6.75714 -4.31269 2.48386 2.71676 3.04619 3.07487 3.11548 3.12688 3.50030 3.92770 4.21494 4.48529 4.59609 4.62408 4.63974 4.66262 4.80874 4.89329 4.98019 5.11170 5.15181 5.25597 5.34141 5.41932 5.42297 5.46650 5.52989 5.65046 5.67186 5.67701 5.68759 5.71472 5.83677 5.89056 5.96194 6.05662 6.07784 6.14729 6.35882 6.58144 6.81693 7.00097 7.03282 7.15099 7.26495 7.59509 7.66208 7.95257 8.04536 8.18599 8.28817 8.61751 8.86063 8.87191 9.03058 10.17539 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.033005 B = 0.001539 C = 0.001482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.141244 B =18190.967818 C =18893.119579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.122 4.122 5 C -0.118 4.118 6 C -0.118 4.118 7 C -0.119 4.119 8 C 0.087 3.913 9 O -0.380 6.380 10 C 0.633 3.367 11 O -0.560 6.560 12 N -0.628 5.628 13 C -0.002 4.002 14 C -0.084 4.084 15 C -0.157 4.157 16 C 0.108 3.892 17 C -0.458 4.458 18 H 0.079 0.921 19 C 0.075 3.925 20 N -0.787 5.787 21 Si 0.909 3.091 22 H -0.268 1.268 23 H -0.278 1.278 24 H -0.261 1.261 25 C -0.216 4.216 26 C -0.098 4.098 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.401 0.599 45 H 0.107 0.893 46 H 0.120 0.880 47 H 0.282 0.718 48 H 0.097 0.903 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.115 -6.577 1.611 24.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.159 4.159 5 C -0.156 4.156 6 C -0.155 4.155 7 C -0.156 4.156 8 C 0.012 3.988 9 O -0.295 6.295 10 C 0.386 3.614 11 O -0.448 6.448 12 N -0.278 5.278 13 C -0.093 4.093 14 C -0.104 4.104 15 C -0.177 4.177 16 C 0.105 3.895 17 C -0.487 4.487 18 H 0.097 0.903 19 C -0.144 4.144 20 N -0.411 5.411 21 Si 0.733 3.267 22 H -0.193 1.193 23 H -0.203 1.203 24 H -0.185 1.185 25 C -0.236 4.236 26 C -0.118 4.118 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.235 0.765 45 H 0.125 0.875 46 H 0.138 0.862 47 H 0.093 0.907 48 H 0.116 0.884 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -22.746 -7.380 1.579 23.965 hybrid contribution 0.568 0.236 0.054 0.617 sum -22.178 -7.144 1.633 23.358 Atomic orbital electron populations 1.21783 0.95995 1.01537 1.01773 1.21547 0.95781 0.97062 1.02004 1.21634 0.95514 0.96662 1.02037 1.21624 0.95253 0.96849 1.02199 1.21575 0.94860 0.96841 1.02278 1.21508 0.95655 0.95620 1.02746 1.21586 0.92781 0.97677 1.03589 1.22894 0.93811 0.79347 1.02726 1.86171 1.23033 1.32579 1.87682 1.18242 0.80523 0.85053 0.77563 1.90995 1.59049 1.39734 1.55027 1.41561 1.07146 1.04579 1.74519 1.16999 0.78779 1.02542 1.10999 1.20568 0.93451 0.97669 0.98672 1.20981 0.93054 1.01098 1.02595 1.17694 0.93155 0.90554 0.88108 1.19580 0.91079 0.95076 1.42998 0.90257 1.25954 1.01560 0.94574 0.92317 1.69867 1.37963 0.99433 1.33864 0.86287 0.81598 0.79348 0.79426 1.19307 1.20276 1.18529 1.20540 0.91984 1.03727 1.07339 1.20036 0.95493 0.97381 0.98893 0.92795 0.92866 0.92794 0.92082 0.92088 0.92063 0.92050 0.91940 0.91955 0.91852 0.91847 0.91497 0.91514 0.90893 0.90874 0.91344 0.91408 0.76505 0.87469 0.86216 0.90728 0.88440 0.88978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.91 37.16 0.37 -0.41 16 2 C -0.13 -0.70 5.93 -26.73 -0.16 -0.86 16 3 C -0.12 -0.70 5.21 -26.73 -0.14 -0.84 16 4 C -0.12 -0.76 5.21 -26.73 -0.14 -0.90 16 5 C -0.12 -0.78 5.21 -26.73 -0.14 -0.92 16 6 C -0.12 -0.91 5.21 -26.73 -0.14 -1.05 16 7 C -0.12 -1.11 5.59 -26.73 -0.15 -1.26 16 8 C 0.09 1.14 5.47 37.16 0.20 1.34 16 9 O -0.38 -6.09 10.27 -40.35 -0.41 -6.50 16 10 C 0.63 12.52 8.58 54.05 0.46 12.98 16 11 O -0.56 -13.08 13.57 -19.28 -0.26 -13.34 16 12 N -0.63 -12.01 5.31 -14.14 -0.08 -12.08 16 13 C 0.00 -0.05 6.30 -83.57 -0.53 -0.57 16 14 C -0.08 -2.12 8.61 -39.79 -0.34 -2.46 16 15 C -0.16 -4.23 8.64 -39.26 -0.34 -4.57 16 16 C 0.11 2.88 5.57 -106.80 -0.59 2.29 16 17 C -0.46 -12.10 9.03 -37.85 -0.34 -12.44 16 18 H 0.08 1.99 7.90 -52.49 -0.41 1.58 16 19 C 0.07 1.88 5.13 -17.34 -0.09 1.79 16 20 N -0.79 -20.72 10.98 55.55 0.61 -20.11 16 21 Si 0.91 18.63 29.60 -169.99 -5.03 13.60 16 22 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 23 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 24 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 25 C -0.22 -5.23 9.74 -39.26 -0.38 -5.61 16 26 C -0.10 -2.17 9.90 -39.79 -0.39 -2.56 16 27 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.05 0.25 8.14 -51.92 -0.42 -0.17 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.40 6.15 8.93 -40.82 -0.36 5.78 16 45 H 0.11 2.74 6.24 -52.48 -0.33 2.41 16 46 H 0.12 3.33 6.19 -52.49 -0.32 3.00 16 47 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 48 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 49 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 402.40 15.07 6.06 6.06 Total: -1.00 -29.93 402.40 -10.55 -40.48 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -8.60 Total: 7.95 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -2.84 Total: -16.06 kcal Atomic # 7 Polarization: -32.73 SS G_CDS: 0.53 Total: -32.20 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.68 Total: -19.84 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -29.93 -10.55 -40.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194743655.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.991 kcal (2) G-P(sol) polarization free energy of solvation -29.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds