Wall clock time and date at job start Tue Mar 31 2020 12:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47061 * 2 1 4 4 C 1.53002 * 109.46974 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.46714 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.46801 * 180.02562 * 5 4 3 7 7 C 1.53004 * 109.47310 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47310 * 180.02562 * 7 6 5 9 9 O 1.45198 * 109.46777 * 180.02562 * 8 7 6 10 10 C 1.34648 * 116.99842 * 179.97438 * 9 8 7 11 11 O 1.21509 * 119.99867 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00226 * 179.97438 * 10 9 8 13 13 C 1.39260 * 120.00025 * 185.18680 * 12 10 9 14 14 C 1.39472 * 119.83276 * 324.03812 * 13 12 10 15 15 C 1.36373 * 120.17191 * 180.27642 * 14 13 12 16 16 C 1.40871 * 119.82308 * 359.48716 * 15 14 13 17 17 C 1.41160 * 120.16515 * 180.23264 * 16 15 14 18 18 H 1.07995 * 120.00242 * 205.06635 * 17 16 15 19 19 C 1.39897 * 120.00088 * 25.06509 * 17 16 15 20 20 N 1.30881 * 119.99896 * 17.73205 * 19 17 16 21 21 Si 1.86802 * 120.00041 * 197.73833 * 19 17 16 22 22 H 1.48500 * 109.47299 * 94.98346 * 21 19 17 23 23 H 1.48504 * 109.46920 * 214.97886 * 21 19 17 24 24 H 1.48493 * 109.47036 * 334.97712 * 21 19 17 25 25 C 1.40862 * 119.67298 * 0.53095 * 16 15 14 26 26 C 1.36380 * 119.82842 * 359.72241 * 25 16 15 27 27 H 1.08997 * 109.47167 * 60.00235 * 1 2 3 28 28 H 1.09010 * 109.46930 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47457 * 299.99730 * 1 2 3 30 30 H 1.09001 * 109.47091 * 239.99693 * 2 1 3 31 31 H 1.09000 * 109.47357 * 120.00258 * 2 1 3 32 32 H 1.09007 * 109.47224 * 60.00292 * 3 2 1 33 33 H 1.08997 * 109.47353 * 299.99564 * 3 2 1 34 34 H 1.09000 * 109.46965 * 60.00862 * 4 3 2 35 35 H 1.08997 * 109.47519 * 299.99927 * 4 3 2 36 36 H 1.08993 * 109.47432 * 60.00541 * 5 4 3 37 37 H 1.08997 * 109.47385 * 299.99801 * 5 4 3 38 38 H 1.09002 * 109.47554 * 59.99825 * 6 5 4 39 39 H 1.09000 * 109.47357 * 300.00137 * 6 5 4 40 40 H 1.09002 * 109.46831 * 59.99533 * 7 6 5 41 41 H 1.08997 * 109.46838 * 299.99996 * 7 6 5 42 42 H 1.08993 * 109.46994 * 60.00047 * 8 7 6 43 43 H 1.09007 * 109.46620 * 299.99853 * 8 7 6 44 44 H 0.97001 * 120.00155 * 5.18587 * 12 10 9 45 45 H 1.08004 * 119.91822 * 0.02562 * 14 13 12 46 46 H 1.08000 * 120.09215 * 179.72378 * 15 14 13 47 47 H 0.96994 * 120.00232 * 180.02562 * 20 19 17 48 48 H 1.08000 * 120.08797 * 179.69174 * 25 16 15 49 49 H 1.07993 * 119.91381 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0799 2.8850 0.0013 6 6 5.6099 2.8850 0.0013 7 6 6.1200 4.3275 0.0013 8 6 7.6500 4.3275 0.0006 9 8 8.1339 5.6965 0.0013 10 6 9.4688 5.8730 0.0013 11 8 10.2090 4.9093 0.0014 12 7 9.9839 7.1183 0.0014 13 6 11.3599 7.3027 -0.1076 14 6 12.2313 6.3999 0.5015 15 6 13.5800 6.5769 0.4040 16 6 14.0924 7.6691 -0.3234 17 6 15.4872 7.8565 -0.4331 18 1 15.8869 8.8433 -0.6138 19 6 16.3518 6.7638 -0.3078 20 7 15.8902 5.5459 -0.4368 21 14 18.1650 7.0430 0.0438 22 1 18.4059 6.9495 1.5062 23 1 18.9699 6.0106 -0.6573 24 1 18.5608 8.3907 -0.4380 25 6 13.2060 8.5769 -0.9354 26 6 11.8597 8.3896 -0.8247 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5137 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6767 1.9563 -0.8900 34 1 3.9337 0.9286 -0.8892 35 1 3.9330 0.9288 0.8908 36 1 3.7163 3.3985 0.8912 37 1 3.7170 3.3991 -0.8887 38 1 5.9733 2.3716 -0.8889 39 1 5.9733 2.3708 0.8910 40 1 5.7566 4.8414 0.8913 41 1 5.7567 4.8413 -0.8887 42 1 8.0129 3.8139 -0.8895 43 1 8.0136 3.8135 0.8905 44 1 9.3962 7.8863 0.0773 45 1 11.8369 5.5606 1.0552 46 1 14.2535 5.8796 0.8798 47 1 16.4895 4.7883 -0.3495 48 1 13.5916 9.4193 -1.4904 49 1 11.1789 9.0849 -1.2929 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194743655.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:31 Heat of formation + Delta-G solvation = -118.644637 kcal Electronic energy + Delta-G solvation = -24844.618694 eV Core-core repulsion = 21155.242678 eV Total energy + Delta-G solvation = -3689.376016 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.73919 -39.68918 -38.10154 -37.44066 -36.25042 -35.51081 -34.79298 -32.42605 -31.44173 -30.87803 -28.82731 -26.96520 -25.31769 -23.57579 -23.12594 -22.55726 -21.98966 -21.74875 -21.53123 -19.77831 -19.23789 -18.20273 -17.85843 -17.32843 -16.94630 -16.77500 -16.05126 -15.76926 -15.32932 -15.10717 -14.83140 -14.73312 -14.54374 -14.34074 -14.00719 -13.89678 -13.68476 -13.39729 -13.33352 -13.08865 -12.85578 -12.78729 -12.66452 -12.48127 -12.34378 -12.05232 -12.02981 -11.89476 -11.78862 -11.74011 -11.57542 -11.44932 -11.38674 -11.30689 -11.23051 -11.09554 -10.59502 -9.47677 -8.95349 -8.63528 -6.28977 0.76181 1.13690 1.18420 1.39561 1.47202 1.54286 1.84541 2.21296 2.73808 3.23139 3.71888 3.79036 3.87042 3.96423 4.05285 4.19302 4.26694 4.27285 4.35073 4.43220 4.46872 4.52437 4.53309 4.72835 4.80529 4.82784 4.87585 4.91598 5.00571 5.06399 5.08592 5.08937 5.13033 5.13914 5.21843 5.27436 5.30221 5.32480 5.35827 5.40973 5.46171 5.52380 5.56131 5.67328 5.83311 6.05103 6.08756 6.30821 6.56580 6.66392 6.91328 6.98806 7.41119 8.32288 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.033005 B = 0.001539 C = 0.001482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.141244 B =18190.967818 C =18893.119579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.127 4.127 3 C -0.119 4.119 4 C -0.120 4.120 5 C -0.114 4.114 6 C -0.115 4.115 7 C -0.107 4.107 8 C 0.079 3.921 9 O -0.366 6.366 10 C 0.635 3.365 11 O -0.600 6.600 12 N -0.618 5.618 13 C 0.007 3.993 14 C -0.096 4.096 15 C -0.181 4.181 16 C 0.077 3.923 17 C -0.491 4.491 18 H 0.085 0.915 19 C 0.031 3.969 20 N -0.826 5.826 21 Si 0.986 3.014 22 H -0.264 1.264 23 H -0.270 1.270 24 H -0.252 1.252 25 C -0.222 4.222 26 C -0.089 4.089 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.423 0.577 45 H 0.097 0.903 46 H 0.098 0.902 47 H 0.288 0.712 48 H 0.115 0.885 49 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.498 -5.491 1.248 25.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.165 4.165 3 C -0.156 4.156 4 C -0.158 4.158 5 C -0.151 4.151 6 C -0.152 4.152 7 C -0.145 4.145 8 C 0.004 3.996 9 O -0.280 6.280 10 C 0.389 3.611 11 O -0.491 6.491 12 N -0.270 5.270 13 C -0.086 4.086 14 C -0.117 4.117 15 C -0.201 4.201 16 C 0.074 3.926 17 C -0.520 4.520 18 H 0.103 0.897 19 C -0.184 4.184 20 N -0.452 5.452 21 Si 0.806 3.194 22 H -0.189 1.189 23 H -0.195 1.195 24 H -0.176 1.176 25 C -0.242 4.242 26 C -0.109 4.109 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.261 0.739 45 H 0.115 0.885 46 H 0.116 0.884 47 H 0.098 0.902 48 H 0.133 0.867 49 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -24.196 -6.268 1.216 25.024 hybrid contribution 0.802 -0.146 0.158 0.830 sum -23.394 -6.413 1.373 24.296 Atomic orbital electron populations 1.21786 0.95634 1.01804 1.01887 1.21554 0.96131 0.96926 1.01893 1.21610 0.95119 0.96792 1.02104 1.21604 0.95579 0.96561 1.02050 1.21534 0.93763 0.97159 1.02647 1.21499 0.96503 0.94441 1.02783 1.21574 0.89621 0.98942 1.04324 1.23266 0.96182 0.77798 1.02313 1.86202 1.20416 1.34399 1.86976 1.18346 0.81460 0.84577 0.76699 1.90982 1.60401 1.41099 1.56627 1.41340 1.06077 1.05429 1.74130 1.17041 0.80202 1.01747 1.09566 1.20588 0.93453 0.98226 0.99394 1.20868 0.93495 1.01716 1.04047 1.18044 0.94237 0.91334 0.88948 1.19877 0.91618 0.95810 1.44680 0.89721 1.26875 1.06344 0.93856 0.91278 1.69943 1.39930 1.00488 1.34828 0.85138 0.75374 0.79617 0.79262 1.18850 1.19514 1.17554 1.20827 0.92761 1.03644 1.06989 1.20384 0.95439 0.97358 0.97709 0.92690 0.92563 0.92667 0.92221 0.92197 0.91959 0.91983 0.92138 0.92097 0.91442 0.91505 0.91581 0.91491 0.90072 0.90180 0.91980 0.91798 0.73941 0.88542 0.88446 0.90169 0.86698 0.84520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.91 71.98 0.71 -0.69 16 2 C -0.13 -1.29 5.93 30.59 0.18 -1.10 16 3 C -0.12 -1.22 5.21 30.59 0.16 -1.06 16 4 C -0.12 -1.33 5.21 30.60 0.16 -1.17 16 5 C -0.11 -1.29 5.21 30.60 0.16 -1.13 16 6 C -0.11 -1.59 5.21 30.60 0.16 -1.43 16 7 C -0.11 -1.80 5.59 30.60 0.17 -1.62 16 8 C 0.08 1.98 5.47 71.98 0.39 2.37 16 9 O -0.37 -11.16 10.27 -55.58 -0.57 -11.73 16 10 C 0.64 24.56 8.58 129.79 1.11 25.67 16 11 O -0.60 -28.33 13.57 19.81 0.27 -28.06 16 12 N -0.62 -22.49 5.31 -429.07 -2.28 -24.77 16 13 C 0.01 0.30 6.30 38.56 0.24 0.54 16 14 C -0.10 -5.01 8.61 22.13 0.19 -4.82 16 15 C -0.18 -10.14 8.64 22.48 0.19 -9.95 16 16 C 0.08 4.21 5.57 -21.28 -0.12 4.09 16 17 C -0.49 -26.42 9.03 23.39 0.21 -26.21 16 18 H 0.08 4.29 7.90 -2.91 -0.02 4.27 16 19 C 0.03 1.61 5.13 85.24 0.44 2.05 16 20 N -0.83 -45.04 10.98 21.82 0.24 -44.80 16 21 Si 0.99 38.49 29.60 68.60 2.03 40.52 16 22 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 23 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 24 H -0.25 -9.37 7.11 99.48 0.71 -8.67 16 25 C -0.22 -10.57 9.74 22.48 0.22 -10.35 16 26 C -0.09 -3.74 9.90 22.13 0.22 -3.52 16 27 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 29 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 33 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 44 H 0.42 11.68 8.93 -92.71 -0.83 10.85 16 45 H 0.10 5.13 6.24 -2.91 -0.02 5.12 16 46 H 0.10 5.77 6.19 -2.91 -0.02 5.75 16 47 H 0.29 14.23 8.30 -92.71 -0.77 13.46 16 48 H 0.12 4.96 8.06 -2.91 -0.02 4.94 16 49 H 0.14 4.51 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -66.16 402.40 4.59 -61.57 By element: Atomic # 1 Polarization: 35.52 SS G_CDS: 0.09 Total: 35.61 kcal Atomic # 6 Polarization: -33.14 SS G_CDS: 4.81 Total: -28.33 kcal Atomic # 7 Polarization: -67.53 SS G_CDS: -2.04 Total: -69.57 kcal Atomic # 8 Polarization: -39.50 SS G_CDS: -0.30 Total: -39.80 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 2.03 Total: 40.52 kcal Total: -66.16 4.59 -61.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194743655.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.074 kcal (2) G-P(sol) polarization free energy of solvation -66.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds