Wall clock time and date at job start Tue Mar 31 2020 12:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52996 * 109.47130 * 2 1 4 4 C 1.53002 * 109.46995 * 60.00098 * 3 2 1 5 5 C 1.53007 * 109.46902 * 59.99869 * 4 3 2 6 6 C 1.52990 * 109.47457 * 300.00247 * 3 2 1 7 7 C 1.52999 * 109.47406 * 299.99812 * 6 3 2 8 8 C 1.50700 * 109.46849 * 179.97438 * 3 2 1 9 9 O 1.21274 * 120.00375 * 0.02562 * 8 3 2 10 10 N 1.34783 * 119.99813 * 180.02562 * 8 3 2 11 11 C 1.46500 * 120.00093 * 180.02562 * 10 8 3 12 12 C 1.50699 * 109.47192 * 180.02562 * 11 10 8 13 13 C 1.38328 * 119.96230 * 269.98024 * 12 11 10 14 14 C 1.38281 * 120.13505 * 180.02562 * 13 12 11 15 15 C 1.38120 * 120.06679 * 359.68445 * 14 13 12 16 16 C 1.38852 * 119.93490 * 0.58817 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.70368 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47010 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46908 * 119.99967 * 22 20 18 25 25 H 1.48504 * 109.47373 * 240.00300 * 22 20 18 26 26 C 1.38073 * 119.96534 * 89.99825 * 12 11 10 27 27 H 1.08998 * 109.46811 * 59.99957 * 1 2 3 28 28 H 1.09002 * 109.46736 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46803 * 299.99752 * 1 2 3 30 30 H 1.09002 * 109.46549 * 240.00258 * 2 1 3 31 31 H 1.08998 * 109.47227 * 120.00697 * 2 1 3 32 32 H 1.09001 * 109.47118 * 179.97438 * 4 3 2 33 33 H 1.09000 * 109.47346 * 300.00363 * 4 3 2 34 34 H 1.08996 * 109.47149 * 59.99873 * 5 4 3 35 35 H 1.09007 * 109.46871 * 179.97438 * 5 4 3 36 36 H 1.09001 * 109.47150 * 299.99878 * 5 4 3 37 37 H 1.09007 * 109.47499 * 59.99717 * 6 3 2 38 38 H 1.09002 * 109.47490 * 179.97438 * 6 3 2 39 39 H 1.09003 * 109.47543 * 179.97438 * 7 6 3 40 40 H 1.08996 * 109.47148 * 300.00164 * 7 6 3 41 41 H 1.09001 * 109.46782 * 59.99932 * 7 6 3 42 42 H 0.97004 * 119.99718 * 0.02562 * 10 8 3 43 43 H 1.09002 * 109.46490 * 60.00223 * 11 10 8 44 44 H 1.08992 * 109.46880 * 300.00477 * 11 10 8 45 45 H 1.08001 * 119.93314 * 0.02562 * 13 12 11 46 46 H 1.07993 * 119.96315 * 179.97438 * 14 13 12 47 47 H 1.08006 * 120.03715 * 180.31908 * 15 14 13 48 48 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 49 49 H 1.07996 * 120.03547 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5301 2.1637 1.2493 5 6 2.0401 1.4423 2.4985 6 6 1.5301 2.1638 -1.2491 7 6 2.0401 1.4427 -2.4984 8 6 3.5471 1.4424 0.0006 9 8 4.1535 0.3921 0.0006 10 7 4.2210 2.6096 0.0013 11 6 5.6860 2.6096 0.0013 12 6 6.1884 4.0304 0.0027 13 6 6.4191 4.6828 -1.1951 14 6 6.8805 5.9863 -1.1979 15 6 7.1063 6.6431 -0.0041 16 6 6.8811 5.9891 1.1999 17 8 7.1078 6.6300 2.3750 18 6 7.6647 7.8560 2.3060 19 1 7.8345 8.3187 1.3450 20 6 8.0194 8.5226 3.4689 21 7 7.8130 7.9588 4.6394 22 14 8.7917 10.2209 3.3733 23 1 8.9163 10.6286 1.9508 24 1 7.9341 11.1958 4.0939 25 1 10.1380 10.1884 3.9992 26 6 6.4182 4.6795 1.1995 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.8938 3.1912 1.2495 33 1 0.4401 2.1636 1.2494 34 1 3.1301 1.4423 2.4985 35 1 1.6771 1.9564 3.3886 36 1 1.6768 0.4147 2.4985 37 1 0.4400 2.1638 -1.2492 38 1 1.8931 3.1916 -1.2489 39 1 1.6763 1.9563 -3.3884 40 1 3.1300 1.4426 -2.4985 41 1 1.6767 0.4150 -2.4985 42 1 3.7360 3.4497 0.0017 43 1 6.0493 2.0963 -0.8890 44 1 6.0492 2.0953 0.8910 45 1 6.2384 4.1730 -2.1299 46 1 7.0601 6.4928 -2.1347 47 1 7.4618 7.6630 -0.0069 48 1 8.0616 8.4251 5.4529 49 1 6.2385 4.1694 2.1343 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319212639.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:10 Heat of formation + Delta-G solvation = -67.456495 kcal Electronic energy + Delta-G solvation = -27187.747298 eV Core-core repulsion = 23500.590966 eV Total energy + Delta-G solvation = -3687.156332 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.64997 -39.15027 -37.28005 -36.59831 -34.51404 -32.46494 -32.35561 -31.36139 -30.46634 -29.15187 -27.38779 -25.80447 -25.03625 -24.36813 -22.18912 -21.78221 -21.50005 -20.80230 -18.90089 -17.73033 -17.16506 -16.55726 -16.06944 -16.04963 -15.42236 -15.13193 -14.75221 -14.64158 -14.37245 -13.81735 -13.66096 -13.58968 -13.32863 -13.24363 -12.94079 -12.93164 -12.66139 -12.43807 -12.32534 -12.10174 -11.82287 -11.76846 -11.68453 -11.49555 -11.40798 -11.30535 -10.96267 -10.88466 -10.83365 -10.71328 -10.49147 -10.46018 -10.45857 -9.60563 -9.42164 -8.93139 -8.90581 -8.24987 -7.34551 -6.50907 -4.10389 1.89625 2.25255 2.75506 3.07816 3.09980 3.15440 3.40641 3.90982 4.37752 4.43920 4.56433 4.62240 4.88102 4.97010 4.98358 5.05618 5.14970 5.17580 5.21925 5.26646 5.29421 5.39444 5.51324 5.53315 5.58532 5.65463 5.73048 5.74093 5.81245 5.83122 5.85499 5.91249 5.94337 5.99845 6.06139 6.07403 6.07912 6.14039 6.23739 6.37338 6.53440 6.54826 6.80109 6.98162 7.17547 7.25733 7.34014 7.62387 7.70651 7.93354 8.32885 8.94622 9.63246 10.66927 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.019564 B = 0.002721 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.832129 B =10287.829043 C =10979.825420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.102 4.102 3 C -0.076 4.076 4 C -0.115 4.115 5 C -0.158 4.158 6 C -0.114 4.114 7 C -0.157 4.157 8 C 0.526 3.474 9 O -0.546 6.546 10 N -0.720 5.720 11 C 0.168 3.832 12 C -0.072 4.072 13 C -0.195 4.195 14 C -0.076 4.076 15 C -0.226 4.226 16 C 0.151 3.849 17 O -0.176 6.176 18 C -0.393 4.393 19 H 0.093 0.907 20 C 0.040 3.960 21 N -0.861 5.861 22 Si 0.941 3.059 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.275 1.275 26 C -0.171 4.171 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.060 0.940 42 H 0.402 0.598 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.106 0.894 46 H 0.109 0.891 47 H 0.128 0.872 48 H 0.270 0.730 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.209 -10.114 -10.448 19.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.140 4.140 3 C -0.079 4.079 4 C -0.152 4.152 5 C -0.215 4.215 6 C -0.152 4.152 7 C -0.214 4.214 8 C 0.313 3.687 9 O -0.424 6.424 10 N -0.371 5.371 11 C 0.045 3.955 12 C -0.073 4.073 13 C -0.215 4.215 14 C -0.094 4.094 15 C -0.246 4.246 16 C 0.097 3.903 17 O -0.080 6.080 18 C -0.469 4.469 19 H 0.110 0.890 20 C -0.165 4.165 21 N -0.495 5.495 22 Si 0.766 3.234 23 H -0.191 1.191 24 H -0.201 1.201 25 H -0.201 1.201 26 C -0.191 4.191 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.236 0.764 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.124 0.876 46 H 0.127 0.873 47 H 0.145 0.855 48 H 0.080 0.920 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.749 -10.876 -9.950 19.489 hybrid contribution 0.341 1.454 -0.063 1.494 sum -12.408 -9.423 -10.013 18.520 Atomic orbital electron populations 1.21916 0.95700 1.01641 1.02027 1.21418 0.95241 0.93914 1.03433 1.20939 0.91668 0.98337 0.96957 1.21644 1.01432 0.99167 0.92995 1.21864 1.01689 1.00692 0.97239 1.21632 1.01483 0.99065 0.93005 1.21856 1.01541 1.00816 0.97159 1.20437 0.89550 0.83545 0.75188 1.90672 1.70301 1.31393 1.50011 1.46148 1.07192 1.08749 1.74987 1.20132 0.79326 0.93705 1.02353 1.19273 1.00713 0.94200 0.93064 1.20471 1.08826 0.95874 0.96298 1.20741 0.97437 0.94330 0.96902 1.21240 1.09543 1.01701 0.92097 1.19320 0.92968 0.91366 0.86638 1.83982 1.69036 1.30282 1.24683 1.21371 1.40120 0.90670 0.94743 0.88995 1.25296 0.97018 0.99976 0.94183 1.70042 1.44099 1.37891 0.97498 0.85647 0.78752 0.80182 0.78845 1.19091 1.20108 1.20086 1.20080 1.08272 0.93278 0.97456 0.92429 0.92741 0.92333 0.91118 0.91020 0.91359 0.90547 0.92546 0.92313 0.92179 0.90535 0.91446 0.92513 0.92639 0.92124 0.76373 0.91116 0.91017 0.87565 0.87316 0.85476 0.91993 0.86455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 9.21 37.16 0.34 -0.81 16 2 C -0.10 -1.00 3.57 -26.73 -0.10 -1.10 16 3 C -0.08 -0.76 0.21 -155.67 -0.03 -0.79 16 4 C -0.11 -1.07 4.54 -26.73 -0.12 -1.19 16 5 C -0.16 -1.64 9.31 37.16 0.35 -1.30 16 6 C -0.11 -0.97 4.54 -26.74 -0.12 -1.09 16 7 C -0.16 -1.41 9.31 37.16 0.35 -1.06 16 8 C 0.53 6.98 3.95 -10.98 -0.04 6.94 16 9 O -0.55 -9.14 15.98 5.56 0.09 -9.05 16 10 N -0.72 -9.39 5.33 -61.47 -0.33 -9.72 16 11 C 0.17 2.47 5.80 -5.19 -0.03 2.44 16 12 C -0.07 -1.21 5.25 -104.65 -0.55 -1.76 16 13 C -0.20 -3.17 9.70 -39.53 -0.38 -3.55 16 14 C -0.08 -1.31 10.04 -39.61 -0.40 -1.71 16 15 C -0.23 -4.70 9.17 -39.40 -0.36 -5.06 16 16 C 0.15 3.50 6.65 -39.11 -0.26 3.24 16 17 O -0.18 -4.90 9.76 0.05 0.00 -4.89 16 18 C -0.39 -10.71 9.49 30.89 0.29 -10.41 16 19 H 0.09 2.32 5.21 -52.49 -0.27 2.04 16 20 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 21 N -0.86 -24.82 13.67 55.48 0.76 -24.06 16 22 Si 0.94 20.10 29.55 -169.99 -5.02 15.08 16 23 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 24 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 25 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 26 C -0.17 -3.44 9.65 -39.39 -0.38 -3.82 16 27 H 0.06 0.38 6.43 -51.93 -0.33 0.05 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.41 6.43 -51.93 -0.33 0.07 16 30 H 0.07 0.75 6.39 -51.93 -0.33 0.42 16 31 H 0.07 0.79 6.39 -51.93 -0.33 0.46 16 32 H 0.07 0.64 7.56 -51.93 -0.39 0.25 16 33 H 0.08 0.59 6.43 -51.93 -0.33 0.25 16 34 H 0.06 0.71 7.21 -51.93 -0.37 0.34 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.59 6.43 -51.93 -0.33 0.25 16 37 H 0.08 0.54 6.43 -51.93 -0.33 0.21 16 38 H 0.07 0.56 7.57 -51.93 -0.39 0.17 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.05 0.60 7.22 -51.93 -0.37 0.23 16 41 H 0.06 0.53 6.43 -51.93 -0.33 0.19 16 42 H 0.40 4.80 7.30 -40.82 -0.30 4.50 16 43 H 0.07 1.02 8.09 -51.93 -0.42 0.60 16 44 H 0.07 1.12 8.08 -51.93 -0.42 0.70 16 45 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 46 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 47 H 0.13 2.66 5.64 -52.48 -0.30 2.36 16 48 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 49 H 0.12 2.35 8.06 -52.49 -0.42 1.92 16 LS Contribution 383.62 15.07 5.78 5.78 Total: -1.00 -30.71 383.62 -7.85 -38.55 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -7.58 Total: 8.34 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: -1.54 Total: -20.04 kcal Atomic # 7 Polarization: -34.21 SS G_CDS: 0.43 Total: -33.78 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: 0.09 Total: -13.94 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.71 -7.85 -38.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319212639.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.903 kcal (2) G-P(sol) polarization free energy of solvation -30.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds