Wall clock time and date at job start Tue Mar 31 2020 12:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52996 * 109.47130 * 2 1 4 4 C 1.53002 * 109.46995 * 60.00098 * 3 2 1 5 5 C 1.53007 * 109.46902 * 59.99869 * 4 3 2 6 6 C 1.52990 * 109.47457 * 300.00247 * 3 2 1 7 7 C 1.52999 * 109.47406 * 299.99812 * 6 3 2 8 8 C 1.50700 * 109.46849 * 179.97438 * 3 2 1 9 9 O 1.21274 * 120.00375 * 0.02562 * 8 3 2 10 10 N 1.34783 * 119.99813 * 180.02562 * 8 3 2 11 11 C 1.46500 * 120.00093 * 180.02562 * 10 8 3 12 12 C 1.50699 * 109.47192 * 180.02562 * 11 10 8 13 13 C 1.38328 * 119.96230 * 269.98024 * 12 11 10 14 14 C 1.38281 * 120.13505 * 180.02562 * 13 12 11 15 15 C 1.38120 * 120.06679 * 359.68445 * 14 13 12 16 16 C 1.38852 * 119.93490 * 0.58817 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.70368 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47010 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46908 * 119.99967 * 22 20 18 25 25 H 1.48504 * 109.47373 * 240.00300 * 22 20 18 26 26 C 1.38073 * 119.96534 * 89.99825 * 12 11 10 27 27 H 1.08998 * 109.46811 * 59.99957 * 1 2 3 28 28 H 1.09002 * 109.46736 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46803 * 299.99752 * 1 2 3 30 30 H 1.09002 * 109.46549 * 240.00258 * 2 1 3 31 31 H 1.08998 * 109.47227 * 120.00697 * 2 1 3 32 32 H 1.09001 * 109.47118 * 179.97438 * 4 3 2 33 33 H 1.09000 * 109.47346 * 300.00363 * 4 3 2 34 34 H 1.08996 * 109.47149 * 59.99873 * 5 4 3 35 35 H 1.09007 * 109.46871 * 179.97438 * 5 4 3 36 36 H 1.09001 * 109.47150 * 299.99878 * 5 4 3 37 37 H 1.09007 * 109.47499 * 59.99717 * 6 3 2 38 38 H 1.09002 * 109.47490 * 179.97438 * 6 3 2 39 39 H 1.09003 * 109.47543 * 179.97438 * 7 6 3 40 40 H 1.08996 * 109.47148 * 300.00164 * 7 6 3 41 41 H 1.09001 * 109.46782 * 59.99932 * 7 6 3 42 42 H 0.97004 * 119.99718 * 0.02562 * 10 8 3 43 43 H 1.09002 * 109.46490 * 60.00223 * 11 10 8 44 44 H 1.08992 * 109.46880 * 300.00477 * 11 10 8 45 45 H 1.08001 * 119.93314 * 0.02562 * 13 12 11 46 46 H 1.07993 * 119.96315 * 179.97438 * 14 13 12 47 47 H 1.08006 * 120.03715 * 180.31908 * 15 14 13 48 48 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 49 49 H 1.07996 * 120.03547 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5301 2.1637 1.2493 5 6 2.0401 1.4423 2.4985 6 6 1.5301 2.1638 -1.2491 7 6 2.0401 1.4427 -2.4984 8 6 3.5471 1.4424 0.0006 9 8 4.1535 0.3921 0.0006 10 7 4.2210 2.6096 0.0013 11 6 5.6860 2.6096 0.0013 12 6 6.1884 4.0304 0.0027 13 6 6.4191 4.6828 -1.1951 14 6 6.8805 5.9863 -1.1979 15 6 7.1063 6.6431 -0.0041 16 6 6.8811 5.9891 1.1999 17 8 7.1078 6.6300 2.3750 18 6 7.6647 7.8560 2.3060 19 1 7.8345 8.3187 1.3450 20 6 8.0194 8.5226 3.4689 21 7 7.8130 7.9588 4.6394 22 14 8.7917 10.2209 3.3733 23 1 8.9163 10.6286 1.9508 24 1 7.9341 11.1958 4.0939 25 1 10.1380 10.1884 3.9992 26 6 6.4182 4.6795 1.1995 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.8938 3.1912 1.2495 33 1 0.4401 2.1636 1.2494 34 1 3.1301 1.4423 2.4985 35 1 1.6771 1.9564 3.3886 36 1 1.6768 0.4147 2.4985 37 1 0.4400 2.1638 -1.2492 38 1 1.8931 3.1916 -1.2489 39 1 1.6763 1.9563 -3.3884 40 1 3.1300 1.4426 -2.4985 41 1 1.6767 0.4150 -2.4985 42 1 3.7360 3.4497 0.0017 43 1 6.0493 2.0963 -0.8890 44 1 6.0492 2.0953 0.8910 45 1 6.2384 4.1730 -2.1299 46 1 7.0601 6.4928 -2.1347 47 1 7.4618 7.6630 -0.0069 48 1 8.0616 8.4251 5.4529 49 1 6.2385 4.1694 2.1343 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319212639.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:09 Heat of formation + Delta-G solvation = -85.488862 kcal Electronic energy + Delta-G solvation = -27188.529240 eV Core-core repulsion = 23500.590966 eV Total energy + Delta-G solvation = -3687.938274 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.66674 -40.79220 -38.66625 -37.84192 -35.79885 -34.29420 -33.21452 -32.47002 -31.51944 -30.74828 -28.35858 -27.45246 -26.53769 -25.11789 -23.29707 -22.92775 -22.72991 -22.21873 -20.06640 -19.36409 -18.76905 -17.61117 -17.18709 -17.00484 -16.74722 -16.48975 -16.12127 -16.03943 -15.69045 -15.43242 -15.11661 -14.63779 -14.49344 -14.26804 -14.02000 -13.92112 -13.69908 -13.64996 -13.61523 -13.27951 -13.05100 -13.04707 -12.62233 -12.52466 -12.51238 -12.36166 -12.29275 -12.22596 -12.10061 -12.08845 -11.62172 -11.24539 -11.20652 -11.20408 -10.84182 -10.67834 -10.10019 -9.75716 -9.04585 -8.47764 -6.16313 0.37432 0.69076 1.35531 1.43314 1.53566 1.69074 2.16655 2.27591 2.85007 3.14700 3.38652 3.61631 3.64152 3.81165 3.84674 4.07178 4.12552 4.25571 4.29207 4.39018 4.41462 4.46595 4.50129 4.51442 4.56007 4.62040 4.69695 4.71882 4.82073 4.88468 4.94842 5.00107 5.04529 5.08646 5.11147 5.11239 5.23946 5.24656 5.26803 5.32962 5.34186 5.39515 5.40759 5.61056 5.65803 5.69235 5.70465 6.00971 6.14996 6.56041 6.97171 7.25346 7.77267 8.75554 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.019564 B = 0.002721 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.832129 B =10287.829043 C =10979.825420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.101 4.101 3 C -0.070 4.070 4 C -0.113 4.113 5 C -0.158 4.158 6 C -0.112 4.112 7 C -0.155 4.155 8 C 0.526 3.474 9 O -0.584 6.584 10 N -0.715 5.715 11 C 0.174 3.826 12 C -0.058 4.058 13 C -0.169 4.169 14 C -0.068 4.068 15 C -0.234 4.234 16 C 0.114 3.886 17 O -0.232 6.232 18 C -0.412 4.412 19 H 0.104 0.896 20 C -0.023 4.023 21 N -0.921 5.921 22 Si 1.018 2.982 23 H -0.249 1.249 24 H -0.269 1.269 25 H -0.271 1.271 26 C -0.182 4.182 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.102 0.898 34 H 0.026 0.974 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.100 0.900 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.032 0.968 41 H 0.060 0.940 42 H 0.409 0.591 43 H 0.083 0.917 44 H 0.057 0.943 45 H 0.147 0.853 46 H 0.149 0.851 47 H 0.121 0.879 48 H 0.272 0.728 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.866 -9.737 -13.737 22.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.139 4.139 3 C -0.073 4.073 4 C -0.150 4.150 5 C -0.215 4.215 6 C -0.149 4.149 7 C -0.213 4.213 8 C 0.314 3.686 9 O -0.464 6.464 10 N -0.366 5.366 11 C 0.050 3.950 12 C -0.058 4.058 13 C -0.188 4.188 14 C -0.086 4.086 15 C -0.254 4.254 16 C 0.064 3.936 17 O -0.139 6.139 18 C -0.488 4.488 19 H 0.121 0.879 20 C -0.221 4.221 21 N -0.559 5.559 22 Si 0.837 3.163 23 H -0.173 1.173 24 H -0.194 1.194 25 H -0.196 1.196 26 C -0.202 4.202 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.121 0.879 34 H 0.045 0.955 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.118 0.882 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.051 0.949 41 H 0.079 0.921 42 H 0.245 0.755 43 H 0.101 0.899 44 H 0.076 0.924 45 H 0.164 0.836 46 H 0.167 0.833 47 H 0.139 0.861 48 H 0.081 0.919 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -14.433 -10.514 -13.296 22.263 hybrid contribution 0.777 1.056 0.722 1.497 sum -13.656 -9.458 -12.574 20.834 Atomic orbital electron populations 1.21888 0.93403 1.02428 1.03002 1.21392 0.97132 0.93328 1.02018 1.20967 0.88922 0.99041 0.98354 1.21684 1.02947 0.98648 0.91745 1.21865 0.99739 1.01452 0.98466 1.21675 1.02875 0.98807 0.91558 1.21847 1.00061 1.01240 0.98110 1.21082 0.91006 0.82697 0.73809 1.90654 1.71379 1.32680 1.51704 1.46063 1.06407 1.09299 1.74832 1.19992 0.80519 0.92094 1.02353 1.19432 0.99365 0.94802 0.92211 1.20972 1.05193 0.95272 0.97316 1.21156 0.95770 0.94622 0.97031 1.21373 1.09712 1.01712 0.92569 1.19830 0.94550 0.92540 0.86688 1.83950 1.71679 1.31132 1.27123 1.21864 1.40279 0.91066 0.95564 0.87880 1.26581 0.97459 1.04502 0.93511 1.70189 1.46962 1.40306 0.98450 0.84535 0.77623 0.74410 0.79689 1.17267 1.19372 1.19584 1.20188 1.08795 0.92648 0.98520 0.91099 0.92208 0.91566 0.92241 0.92862 0.91408 0.87937 0.95496 0.91648 0.91687 0.88170 0.90974 0.90972 0.94859 0.92098 0.75515 0.89858 0.92429 0.83561 0.83286 0.86106 0.91881 0.87733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.21 71.99 0.66 -1.14 16 2 C -0.10 -1.84 3.57 30.60 0.11 -1.73 16 3 C -0.07 -1.28 0.21 -52.93 -0.01 -1.29 16 4 C -0.11 -1.89 4.54 30.60 0.14 -1.75 16 5 C -0.16 -3.25 9.31 71.98 0.67 -2.58 16 6 C -0.11 -1.55 4.54 30.59 0.14 -1.41 16 7 C -0.16 -2.40 9.31 71.98 0.67 -1.73 16 8 C 0.53 13.60 3.95 87.66 0.35 13.95 16 9 O -0.58 -19.66 15.98 -3.01 -0.05 -19.71 16 10 N -0.71 -17.87 5.33 -466.79 -2.49 -20.36 16 11 C 0.17 4.94 5.80 85.63 0.50 5.44 16 12 C -0.06 -1.85 5.25 -19.88 -0.10 -1.95 16 13 C -0.17 -4.81 9.70 22.30 0.22 -4.59 16 14 C -0.07 -2.12 10.04 22.25 0.22 -1.89 16 15 C -0.23 -9.60 9.17 22.39 0.21 -9.39 16 16 C 0.11 5.48 6.65 22.58 0.15 5.63 16 17 O -0.23 -13.69 9.76 -22.74 -0.22 -13.91 16 18 C -0.41 -23.45 9.49 67.92 0.64 -22.81 16 19 H 0.10 5.35 5.21 -2.91 -0.02 5.33 16 20 C -0.02 -1.29 5.49 84.83 0.47 -0.83 16 21 N -0.92 -56.08 13.67 21.61 0.30 -55.78 16 22 Si 1.02 42.12 29.55 68.60 2.03 44.15 16 23 H -0.25 -9.44 7.11 99.48 0.71 -8.73 16 24 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 25 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 26 C -0.18 -7.50 9.65 22.39 0.22 -7.28 16 27 H 0.07 0.68 6.43 -2.39 -0.02 0.66 16 28 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.07 0.70 6.43 -2.39 -0.02 0.69 16 30 H 0.06 1.21 6.39 -2.39 -0.02 1.20 16 31 H 0.05 1.16 6.39 -2.39 -0.02 1.14 16 32 H 0.07 1.16 7.56 -2.39 -0.02 1.14 16 33 H 0.10 1.23 6.43 -2.39 -0.02 1.21 16 34 H 0.03 0.69 7.21 -2.39 -0.02 0.67 16 35 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.06 1.25 6.43 -2.39 -0.02 1.23 16 37 H 0.10 0.98 6.43 -2.38 -0.02 0.96 16 38 H 0.07 0.96 7.57 -2.39 -0.02 0.94 16 39 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.03 0.65 7.22 -2.39 -0.02 0.64 16 41 H 0.06 0.93 6.43 -2.39 -0.02 0.92 16 42 H 0.41 9.09 7.30 -92.71 -0.68 8.42 16 43 H 0.08 2.21 8.09 -2.39 -0.02 2.20 16 44 H 0.06 1.82 8.08 -2.39 -0.02 1.80 16 45 H 0.15 3.18 8.06 -2.91 -0.02 3.15 16 46 H 0.15 3.53 8.06 -2.91 -0.02 3.50 16 47 H 0.12 5.05 5.64 -2.91 -0.02 5.03 16 48 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 49 H 0.10 4.49 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -72.45 383.62 5.08 -67.37 By element: Atomic # 1 Polarization: 33.31 SS G_CDS: 0.28 Total: 33.59 kcal Atomic # 6 Polarization: -40.59 SS G_CDS: 5.24 Total: -35.35 kcal Atomic # 7 Polarization: -73.95 SS G_CDS: -2.19 Total: -76.14 kcal Atomic # 8 Polarization: -33.35 SS G_CDS: -0.27 Total: -33.62 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -72.45 5.08 -67.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319212639.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.120 kcal (2) G-P(sol) polarization free energy of solvation -72.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds