Wall clock time and date at job start Tue Mar 31 2020 12:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47257 * 2 1 4 4 C 1.53002 * 109.46793 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.46793 * 179.97438 * 4 3 2 6 6 C 1.52994 * 109.46902 * 180.02562 * 5 4 3 7 7 C 1.53005 * 109.46902 * 180.02562 * 6 5 4 8 8 H 1.08997 * 109.47404 * 304.99685 * 7 6 5 9 9 C 1.53001 * 109.47037 * 65.00083 * 7 6 5 10 10 C 1.50708 * 109.47097 * 184.99843 * 7 6 5 11 11 O 1.21291 * 119.99804 * 359.97438 * 10 7 6 12 12 N 1.34768 * 119.99781 * 179.97438 * 10 7 6 13 13 C 1.39998 * 119.99849 * 175.48302 * 12 10 7 14 14 C 1.38925 * 120.00210 * 214.85027 * 13 12 10 15 15 C 1.38003 * 119.99454 * 179.79325 * 14 13 12 16 16 C 1.38908 * 120.00363 * 0.45887 * 15 14 13 17 17 O 1.35773 * 119.99755 * 179.77029 * 16 15 14 18 18 C 1.34816 * 117.00116 * 185.37494 * 17 16 15 19 19 H 1.07998 * 119.99478 * 354.95503 * 18 17 16 20 20 C 1.38628 * 120.00457 * 174.96378 * 18 17 16 21 21 N 1.31578 * 119.99628 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00096 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47239 * 59.99862 * 22 20 18 24 24 H 1.48503 * 109.46891 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47123 * 299.99411 * 22 20 18 26 26 C 1.38910 * 120.00129 * 359.79734 * 16 15 14 27 27 C 1.37999 * 120.00007 * 359.96984 * 26 16 15 28 28 H 1.08999 * 109.46880 * 300.00407 * 1 2 3 29 29 H 1.09000 * 109.46776 * 59.99621 * 1 2 3 30 30 H 1.08995 * 109.47157 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47582 * 239.99770 * 2 1 3 32 32 H 1.09005 * 109.47327 * 119.99923 * 2 1 3 33 33 H 1.08995 * 109.47016 * 59.99978 * 3 2 1 34 34 H 1.08997 * 109.47040 * 299.99902 * 3 2 1 35 35 H 1.08995 * 109.47206 * 60.00279 * 4 3 2 36 36 H 1.08997 * 109.47398 * 299.99867 * 4 3 2 37 37 H 1.08997 * 109.47040 * 300.00086 * 5 4 3 38 38 H 1.08995 * 109.47016 * 60.00163 * 5 4 3 39 39 H 1.09005 * 109.47498 * 299.99811 * 6 5 4 40 40 H 1.08995 * 109.47765 * 59.99875 * 6 5 4 41 41 H 1.09001 * 109.46977 * 299.99729 * 9 7 6 42 42 H 1.08993 * 109.47605 * 60.00019 * 9 7 6 43 43 H 1.09005 * 109.47010 * 180.02562 * 9 7 6 44 44 H 0.97002 * 120.00704 * 355.48945 * 12 10 7 45 45 H 1.07995 * 119.99737 * 0.02562 * 14 13 12 46 46 H 1.08000 * 119.99396 * 180.23055 * 15 14 13 47 47 H 0.97004 * 119.99841 * 180.02562 * 21 20 18 48 48 H 1.08001 * 119.99578 * 179.97438 * 26 16 15 49 49 H 1.08007 * 119.99690 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0801 2.8849 0.0000 6 6 5.6100 2.8848 0.0000 7 6 6.1201 4.3274 0.0000 8 1 5.6856 4.8664 -0.8418 9 6 5.7153 5.0114 1.3074 10 6 7.6221 4.3291 -0.1238 11 8 8.2252 3.2799 -0.2037 12 7 8.2950 5.4966 -0.1458 13 6 9.6948 5.4974 -0.1653 14 6 10.3983 6.4925 0.5017 15 6 11.7782 6.4907 0.4859 16 6 12.4637 5.4995 -0.2049 17 8 13.8213 5.5005 -0.2242 18 6 14.4230 4.5787 -1.0026 19 1 13.8313 3.8315 -1.5103 20 6 15.8013 4.5899 -1.1510 21 7 16.5222 5.5006 -0.5327 22 14 16.6350 3.3123 -2.2290 23 1 16.1236 3.4270 -3.6184 24 1 18.1026 3.5394 -2.2208 25 1 16.3419 1.9545 -1.7041 26 6 11.7602 4.5075 -0.8763 27 6 10.3804 4.5065 -0.8566 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 3.9337 0.9285 -0.8891 36 1 3.9330 0.9287 0.8908 37 1 3.7171 3.3982 -0.8904 38 1 3.7164 3.3993 0.8895 39 1 5.9734 2.3714 0.8903 40 1 5.9734 2.3706 -0.8897 41 1 4.6290 5.0102 1.3969 42 1 6.1499 4.4724 2.1492 43 1 6.0783 6.0392 1.3072 44 1 7.8095 6.3364 -0.1479 45 1 9.8653 7.2652 1.0357 46 1 12.3252 7.2621 1.0076 47 1 17.4866 5.5087 -0.6368 48 1 12.2933 3.7371 -1.4137 49 1 9.8335 3.7354 -1.3790 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339466318.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:27 Heat of formation + Delta-G solvation = -76.742543 kcal Electronic energy + Delta-G solvation = -25495.658904 eV Core-core repulsion = 21808.099899 eV Total energy + Delta-G solvation = -3687.559005 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.29909 -38.76089 -37.24224 -36.44609 -35.07530 -33.95859 -32.26177 -31.93423 -30.18363 -28.52214 -27.69484 -25.58445 -25.18703 -23.41906 -22.26421 -21.55248 -21.31058 -20.63543 -19.65086 -18.07314 -17.53650 -16.68933 -16.37786 -16.28220 -15.48991 -14.88366 -14.58352 -14.45216 -14.41536 -14.14533 -13.68556 -13.60262 -13.53431 -13.40676 -12.99372 -12.85504 -12.79599 -12.58001 -12.28413 -12.03536 -11.87967 -11.69810 -11.53504 -11.49414 -11.35442 -11.32310 -11.08476 -10.98723 -10.91036 -10.74222 -10.68566 -10.65854 -10.43567 -9.65010 -9.57097 -9.12740 -8.67401 -8.18727 -6.91707 -6.42603 -4.00300 2.10781 2.23611 2.88022 3.16201 3.17259 3.19624 3.34209 3.99635 4.31470 4.50988 4.54181 4.59811 4.70558 4.73261 4.75448 4.91319 5.06242 5.11459 5.11680 5.20344 5.25460 5.28128 5.38127 5.42403 5.49571 5.56434 5.58809 5.62627 5.69087 5.72267 5.75750 5.78228 5.82180 5.85524 5.94188 6.02735 6.13396 6.16350 6.19311 6.23296 6.36921 6.75174 6.87871 7.03253 7.12094 7.32528 7.46004 7.72752 7.81526 8.02511 8.42297 9.03120 9.72557 10.75254 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.022012 B = 0.001896 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.707631 B =14762.231085 C =15877.408536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.120 4.120 4 C -0.121 4.121 5 C -0.120 4.120 6 C -0.101 4.101 7 C -0.109 4.109 8 H 0.095 0.905 9 C -0.145 4.145 10 C 0.507 3.493 11 O -0.526 6.526 12 N -0.661 5.661 13 C 0.033 3.967 14 C -0.094 4.094 15 C -0.178 4.178 16 C 0.146 3.854 17 O -0.177 6.177 18 C -0.391 4.391 19 H 0.092 0.908 20 C 0.040 3.960 21 N -0.863 5.863 22 Si 0.941 3.059 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.270 1.270 26 C -0.221 4.221 27 C -0.065 4.065 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.401 0.599 45 H 0.114 0.886 46 H 0.121 0.879 47 H 0.270 0.730 48 H 0.130 0.870 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.193 -3.112 1.096 28.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.157 4.157 4 C -0.159 4.159 5 C -0.157 4.157 6 C -0.139 4.139 7 C -0.130 4.130 8 H 0.113 0.887 9 C -0.203 4.203 10 C 0.294 3.706 11 O -0.402 6.402 12 N -0.305 5.305 13 C -0.059 4.059 14 C -0.114 4.114 15 C -0.198 4.198 16 C 0.092 3.908 17 O -0.080 6.080 18 C -0.467 4.467 19 H 0.109 0.891 20 C -0.165 4.165 21 N -0.498 5.498 22 Si 0.765 3.235 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.195 1.195 26 C -0.241 4.241 27 C -0.085 4.085 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.235 0.765 45 H 0.132 0.868 46 H 0.139 0.861 47 H 0.080 0.920 48 H 0.148 0.852 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -27.352 -3.681 1.192 27.624 hybrid contribution 0.193 -0.183 -0.542 0.604 sum -27.159 -3.863 0.649 27.440 Atomic orbital electron populations 1.21780 0.96038 1.01514 1.01716 1.21552 0.95715 0.97125 1.02063 1.21628 0.95594 0.96613 1.01905 1.21609 0.95047 0.96911 1.02330 1.21665 0.95190 0.96876 1.02007 1.21412 0.94569 0.94154 1.03737 1.21318 0.91865 0.99427 1.00394 0.88702 1.21830 1.02084 1.00278 0.96066 1.20722 0.89822 0.83688 0.76338 1.90702 1.69851 1.31403 1.48247 1.43252 1.05355 1.08649 1.73274 1.17288 0.81291 1.01316 1.06006 1.20358 0.93325 0.98586 0.99129 1.19988 0.92689 1.00657 1.06474 1.19410 0.85032 0.92924 0.93438 1.83970 1.12861 1.52170 1.59045 1.21288 0.90441 1.08853 1.26148 0.89092 1.25274 0.95351 0.98094 0.97746 1.70040 1.06633 1.32830 1.40323 0.85785 0.78235 0.79776 0.79685 1.19497 1.20284 1.19484 1.21110 0.93652 1.02174 1.07121 1.20851 0.93531 0.97437 0.96632 0.92830 0.92821 0.92884 0.92061 0.92066 0.92131 0.92122 0.91928 0.91921 0.92067 0.91750 0.91207 0.91029 0.91289 0.91953 0.92194 0.76514 0.86795 0.86090 0.92007 0.85240 0.85761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 37.16 0.37 -0.46 16 2 C -0.13 -0.77 5.93 -26.73 -0.16 -0.93 16 3 C -0.12 -0.74 5.22 -26.73 -0.14 -0.88 16 4 C -0.12 -0.86 5.21 -26.73 -0.14 -1.00 16 5 C -0.12 -0.84 4.97 -26.73 -0.13 -0.98 16 6 C -0.10 -0.96 4.03 -26.73 -0.11 -1.07 16 7 C -0.11 -1.01 2.72 -91.76 -0.25 -1.26 16 8 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 9 C -0.15 -1.09 8.85 37.16 0.33 -0.76 16 10 C 0.51 7.12 7.00 -10.99 -0.08 7.04 16 11 O -0.53 -9.68 13.36 5.55 0.07 -9.60 16 12 N -0.66 -9.04 5.20 -9.82 -0.05 -9.09 16 13 C 0.03 0.60 6.30 -83.62 -0.53 0.07 16 14 C -0.09 -1.66 9.96 -39.41 -0.39 -2.05 16 15 C -0.18 -3.76 9.98 -39.42 -0.39 -4.15 16 16 C 0.15 3.60 6.65 -39.08 -0.26 3.34 16 17 O -0.18 -5.12 9.75 0.02 0.00 -5.12 16 18 C -0.39 -11.12 9.48 30.88 0.29 -10.83 16 19 H 0.09 2.41 5.20 -52.49 -0.27 2.14 16 20 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 21 N -0.86 -25.49 13.67 55.48 0.76 -24.74 16 22 Si 0.94 20.88 29.55 -169.99 -5.02 15.86 16 23 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 24 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 25 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 26 C -0.22 -5.08 9.16 -39.42 -0.36 -5.44 16 27 C -0.06 -1.33 8.69 -39.42 -0.34 -1.67 16 28 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.41 6.56 -51.93 -0.34 0.07 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.79 7.96 -51.93 -0.41 0.37 16 41 H 0.07 0.40 6.56 -51.93 -0.34 0.06 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.39 7.67 -51.93 -0.40 -0.01 16 44 H 0.40 3.95 8.38 -40.82 -0.34 3.61 16 45 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 46 H 0.12 2.42 8.06 -52.49 -0.42 1.99 16 47 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 48 H 0.13 3.00 5.63 -52.49 -0.30 2.70 16 49 H 0.12 2.54 6.23 -52.48 -0.33 2.21 16 LS Contribution 396.88 15.07 5.98 5.98 Total: -1.00 -32.85 396.88 -8.85 -41.70 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -8.21 Total: 5.02 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: -2.39 Total: -20.01 kcal Atomic # 7 Polarization: -34.53 SS G_CDS: 0.71 Total: -33.82 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: 0.07 Total: -14.72 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.85 -8.85 -41.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339466318.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.040 kcal (2) G-P(sol) polarization free energy of solvation -32.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds