Wall clock time and date at job start Tue Mar 31 2020 12:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47257 * 2 1 4 4 C 1.53002 * 109.46793 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.46793 * 179.97438 * 4 3 2 6 6 C 1.52994 * 109.46902 * 180.02562 * 5 4 3 7 7 C 1.53005 * 109.46902 * 180.02562 * 6 5 4 8 8 H 1.08997 * 109.47404 * 304.99685 * 7 6 5 9 9 C 1.53001 * 109.47037 * 65.00083 * 7 6 5 10 10 C 1.50708 * 109.47097 * 184.99843 * 7 6 5 11 11 O 1.21291 * 119.99804 * 359.97438 * 10 7 6 12 12 N 1.34768 * 119.99781 * 179.97438 * 10 7 6 13 13 C 1.39998 * 119.99849 * 175.48302 * 12 10 7 14 14 C 1.38925 * 120.00210 * 214.85027 * 13 12 10 15 15 C 1.38003 * 119.99454 * 179.79325 * 14 13 12 16 16 C 1.38908 * 120.00363 * 0.45887 * 15 14 13 17 17 O 1.35773 * 119.99755 * 179.77029 * 16 15 14 18 18 C 1.34816 * 117.00116 * 185.37494 * 17 16 15 19 19 H 1.07998 * 119.99478 * 354.95503 * 18 17 16 20 20 C 1.38628 * 120.00457 * 174.96378 * 18 17 16 21 21 N 1.31578 * 119.99628 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00096 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47239 * 59.99862 * 22 20 18 24 24 H 1.48503 * 109.46891 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47123 * 299.99411 * 22 20 18 26 26 C 1.38910 * 120.00129 * 359.79734 * 16 15 14 27 27 C 1.37999 * 120.00007 * 359.96984 * 26 16 15 28 28 H 1.08999 * 109.46880 * 300.00407 * 1 2 3 29 29 H 1.09000 * 109.46776 * 59.99621 * 1 2 3 30 30 H 1.08995 * 109.47157 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47582 * 239.99770 * 2 1 3 32 32 H 1.09005 * 109.47327 * 119.99923 * 2 1 3 33 33 H 1.08995 * 109.47016 * 59.99978 * 3 2 1 34 34 H 1.08997 * 109.47040 * 299.99902 * 3 2 1 35 35 H 1.08995 * 109.47206 * 60.00279 * 4 3 2 36 36 H 1.08997 * 109.47398 * 299.99867 * 4 3 2 37 37 H 1.08997 * 109.47040 * 300.00086 * 5 4 3 38 38 H 1.08995 * 109.47016 * 60.00163 * 5 4 3 39 39 H 1.09005 * 109.47498 * 299.99811 * 6 5 4 40 40 H 1.08995 * 109.47765 * 59.99875 * 6 5 4 41 41 H 1.09001 * 109.46977 * 299.99729 * 9 7 6 42 42 H 1.08993 * 109.47605 * 60.00019 * 9 7 6 43 43 H 1.09005 * 109.47010 * 180.02562 * 9 7 6 44 44 H 0.97002 * 120.00704 * 355.48945 * 12 10 7 45 45 H 1.07995 * 119.99737 * 0.02562 * 14 13 12 46 46 H 1.08000 * 119.99396 * 180.23055 * 15 14 13 47 47 H 0.97004 * 119.99841 * 180.02562 * 21 20 18 48 48 H 1.08001 * 119.99578 * 179.97438 * 26 16 15 49 49 H 1.08007 * 119.99690 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0801 2.8849 0.0000 6 6 5.6100 2.8848 0.0000 7 6 6.1201 4.3274 0.0000 8 1 5.6856 4.8664 -0.8418 9 6 5.7153 5.0114 1.3074 10 6 7.6221 4.3291 -0.1238 11 8 8.2252 3.2799 -0.2037 12 7 8.2950 5.4966 -0.1458 13 6 9.6948 5.4974 -0.1653 14 6 10.3983 6.4925 0.5017 15 6 11.7782 6.4907 0.4859 16 6 12.4637 5.4995 -0.2049 17 8 13.8213 5.5005 -0.2242 18 6 14.4230 4.5787 -1.0026 19 1 13.8313 3.8315 -1.5103 20 6 15.8013 4.5899 -1.1510 21 7 16.5222 5.5006 -0.5327 22 14 16.6350 3.3123 -2.2290 23 1 16.1236 3.4270 -3.6184 24 1 18.1026 3.5394 -2.2208 25 1 16.3419 1.9545 -1.7041 26 6 11.7602 4.5075 -0.8763 27 6 10.3804 4.5065 -0.8566 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 3.9337 0.9285 -0.8891 36 1 3.9330 0.9287 0.8908 37 1 3.7171 3.3982 -0.8904 38 1 3.7164 3.3993 0.8895 39 1 5.9734 2.3714 0.8903 40 1 5.9734 2.3706 -0.8897 41 1 4.6290 5.0102 1.3969 42 1 6.1499 4.4724 2.1492 43 1 6.0783 6.0392 1.3072 44 1 7.8095 6.3364 -0.1479 45 1 9.8653 7.2652 1.0357 46 1 12.3252 7.2621 1.0076 47 1 17.4866 5.5087 -0.6368 48 1 12.2933 3.7371 -1.4137 49 1 9.8335 3.7354 -1.3790 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339466318.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:26 Heat of formation + Delta-G solvation = -95.465826 kcal Electronic energy + Delta-G solvation = -25496.470806 eV Core-core repulsion = 21808.099899 eV Total energy + Delta-G solvation = -3688.370907 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.60502 -40.44672 -38.42019 -37.57975 -35.81572 -35.38416 -34.17789 -32.66540 -31.86914 -29.70714 -28.68756 -27.31823 -26.13202 -24.45334 -23.80370 -22.75311 -21.83809 -21.65692 -20.74853 -19.89934 -19.15480 -18.02967 -17.89014 -16.90554 -16.49911 -16.30976 -16.07504 -15.72053 -15.50374 -15.29890 -15.13958 -14.93653 -14.64487 -14.44152 -14.23906 -13.99778 -13.62800 -13.56553 -13.41476 -13.21627 -13.13961 -12.96587 -12.71826 -12.55219 -12.45860 -12.40650 -12.15742 -11.96002 -11.90371 -11.70869 -11.47297 -11.40996 -11.27294 -11.24117 -11.08263 -10.67666 -10.48253 -9.85071 -8.62195 -8.47842 -6.14912 0.49948 0.55005 1.33758 1.43035 1.49526 1.67863 2.15907 2.18824 2.80953 3.13674 3.50339 3.65162 3.70971 3.96584 4.06908 4.10321 4.10819 4.14293 4.21570 4.36030 4.44264 4.47295 4.55204 4.64424 4.65346 4.68537 4.76862 4.86316 4.91610 4.96409 5.01205 5.03603 5.06302 5.06720 5.12167 5.17863 5.25016 5.26352 5.33510 5.34820 5.39960 5.44558 5.48120 5.55165 5.58487 5.60381 5.68981 6.00907 6.16424 6.57513 6.96521 7.27903 7.75599 8.74539 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.022012 B = 0.001896 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.707631 B =14762.231085 C =15877.408536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.130 4.130 3 C -0.115 4.115 4 C -0.123 4.123 5 C -0.111 4.111 6 C -0.100 4.100 7 C -0.097 4.097 8 H 0.126 0.874 9 C -0.143 4.143 10 C 0.503 3.497 11 O -0.573 6.573 12 N -0.649 5.649 13 C 0.061 3.939 14 C -0.078 4.078 15 C -0.180 4.180 16 C 0.105 3.895 17 O -0.227 6.227 18 C -0.416 4.416 19 H 0.096 0.904 20 C -0.019 4.019 21 N -0.917 5.917 22 Si 1.016 2.984 23 H -0.258 1.258 24 H -0.267 1.267 25 H -0.261 1.261 26 C -0.230 4.230 27 C -0.078 4.078 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.049 0.951 40 H 0.049 0.951 41 H 0.093 0.907 42 H 0.045 0.955 43 H 0.076 0.924 44 H 0.425 0.575 45 H 0.168 0.832 46 H 0.129 0.871 47 H 0.273 0.727 48 H 0.115 0.885 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.980 -2.137 1.123 32.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.167 4.167 3 C -0.153 4.153 4 C -0.160 4.160 5 C -0.148 4.148 6 C -0.138 4.138 7 C -0.118 4.118 8 H 0.144 0.856 9 C -0.200 4.200 10 C 0.293 3.707 11 O -0.452 6.452 12 N -0.296 5.296 13 C -0.033 4.033 14 C -0.097 4.097 15 C -0.199 4.199 16 C 0.055 3.945 17 O -0.134 6.134 18 C -0.492 4.492 19 H 0.113 0.887 20 C -0.217 4.217 21 N -0.555 5.555 22 Si 0.835 3.165 23 H -0.183 1.183 24 H -0.192 1.192 25 H -0.186 1.186 26 C -0.250 4.250 27 C -0.098 4.098 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.112 0.888 42 H 0.065 0.935 43 H 0.095 0.905 44 H 0.264 0.736 45 H 0.185 0.815 46 H 0.147 0.853 47 H 0.082 0.918 48 H 0.133 0.867 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -31.239 -2.673 1.226 31.377 hybrid contribution 0.985 -0.464 -0.478 1.189 sum -30.254 -3.137 0.748 30.425 Atomic orbital electron populations 1.21774 0.95402 1.01772 1.02019 1.21571 0.96301 0.97177 1.01685 1.21587 0.94622 0.96645 1.02404 1.21606 0.95877 0.97026 1.01516 1.21608 0.92923 0.96956 1.03315 1.21385 0.96479 0.94127 1.01790 1.21371 0.87739 0.99794 1.02883 0.85587 1.21869 1.03705 1.00587 0.93886 1.21724 0.91824 0.82708 0.74444 1.90700 1.71229 1.33223 1.50046 1.43225 1.03358 1.10181 1.72798 1.17454 0.83646 0.99353 1.02846 1.20802 0.91882 0.99147 0.97906 1.20339 0.94310 0.99778 1.05516 1.19943 0.84209 0.94867 0.95504 1.83931 1.14908 1.53500 1.61067 1.21723 0.91293 1.09430 1.26782 0.88670 1.26514 0.95606 1.00436 0.99109 1.70172 1.07015 1.35435 1.42839 0.84696 0.77230 0.76778 0.77817 1.18275 1.19166 1.18565 1.21100 0.94790 1.01809 1.07314 1.20926 0.92558 0.98682 0.97675 0.92475 0.92536 0.92720 0.92530 0.92444 0.91498 0.91635 0.92899 0.92735 0.90759 0.90237 0.93169 0.93180 0.88804 0.93543 0.90472 0.73553 0.81457 0.85296 0.91755 0.86706 0.85836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.91 71.98 0.71 -0.69 16 2 C -0.13 -1.41 5.93 30.60 0.18 -1.23 16 3 C -0.12 -1.18 5.22 30.60 0.16 -1.02 16 4 C -0.12 -1.55 5.21 30.60 0.16 -1.39 16 5 C -0.11 -1.24 4.97 30.59 0.15 -1.09 16 6 C -0.10 -1.73 4.03 30.59 0.12 -1.60 16 7 C -0.10 -1.46 2.72 -11.54 -0.03 -1.49 16 8 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 9 C -0.14 -1.50 8.85 71.98 0.64 -0.86 16 10 C 0.50 12.87 7.00 87.66 0.61 13.48 16 11 O -0.57 -20.76 13.36 -3.06 -0.04 -20.80 16 12 N -0.65 -15.29 5.20 -303.37 -1.58 -16.87 16 13 C 0.06 2.04 6.30 38.16 0.24 2.28 16 14 C -0.08 -2.49 9.96 22.38 0.22 -2.27 16 15 C -0.18 -7.49 9.98 22.37 0.22 -7.27 16 16 C 0.11 5.41 6.65 22.59 0.15 5.56 16 17 O -0.23 -13.97 9.75 -22.85 -0.22 -14.20 16 18 C -0.42 -25.05 9.48 67.91 0.64 -24.41 16 19 H 0.10 5.38 5.20 -2.91 -0.02 5.37 16 20 C -0.02 -1.09 5.49 84.82 0.47 -0.62 16 21 N -0.92 -56.76 13.67 21.61 0.30 -56.47 16 22 Si 1.02 44.17 29.55 68.60 2.03 46.19 16 23 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 24 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 25 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 26 C -0.23 -11.04 9.16 22.37 0.20 -10.84 16 27 C -0.08 -3.23 8.69 22.38 0.19 -3.03 16 28 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 33 H 0.07 0.61 8.14 -2.39 -0.02 0.60 16 34 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.08 0.68 6.56 -2.39 -0.02 0.67 16 39 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 40 H 0.05 1.08 7.96 -2.39 -0.02 1.06 16 41 H 0.09 0.58 6.56 -2.39 -0.02 0.56 16 42 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.08 0.57 7.67 -2.38 -0.02 0.55 16 44 H 0.43 6.06 8.38 -92.71 -0.78 5.29 16 45 H 0.17 3.65 8.06 -2.91 -0.02 3.62 16 46 H 0.13 5.11 8.06 -2.91 -0.02 5.08 16 47 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 48 H 0.12 5.70 5.63 -2.91 -0.02 5.68 16 49 H 0.12 5.11 6.23 -2.91 -0.02 5.10 16 Total: -1.00 -78.08 396.88 5.69 -72.39 By element: Atomic # 1 Polarization: 26.09 SS G_CDS: 0.15 Total: 26.24 kcal Atomic # 6 Polarization: -41.54 SS G_CDS: 5.06 Total: -36.49 kcal Atomic # 7 Polarization: -72.06 SS G_CDS: -1.28 Total: -73.34 kcal Atomic # 8 Polarization: -34.74 SS G_CDS: -0.26 Total: -35.00 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -78.08 5.69 -72.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339466318.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.078 kcal (2) G-P(sol) polarization free energy of solvation -78.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds