Wall clock time and date at job start Tue Mar 31 2020 12:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46774 * 2 1 4 4 C 1.52991 * 109.47443 * 65.00240 * 3 2 1 5 5 C 1.52994 * 109.47291 * 183.70418 * 4 3 2 6 6 C 1.53003 * 109.46676 * 185.00358 * 3 2 1 7 7 H 1.09002 * 109.46978 * 186.47879 * 6 3 2 8 8 C 1.52996 * 109.47116 * 306.47934 * 6 3 2 9 9 C 1.50704 * 109.47301 * 66.48044 * 6 3 2 10 10 O 1.21281 * 119.99981 * 356.38614 * 9 6 3 11 11 N 1.34774 * 120.00166 * 176.66774 * 9 6 3 12 12 C 1.46496 * 120.00185 * 179.72737 * 11 9 6 13 13 C 1.50699 * 109.47127 * 179.97438 * 12 11 9 14 14 C 1.38322 * 119.96328 * 269.71658 * 13 12 11 15 15 C 1.38283 * 120.13608 * 179.76752 * 14 13 12 16 16 C 1.38122 * 120.07130 * 0.51107 * 15 14 13 17 17 C 1.38862 * 119.92825 * 359.74974 * 16 15 14 18 18 O 1.35755 * 120.06909 * 179.97438 * 17 16 15 19 19 C 1.34826 * 116.99823 * 5.65968 * 18 17 16 20 20 H 1.08003 * 119.99857 * 5.23615 * 19 18 17 21 21 C 1.38652 * 119.99651 * 185.23963 * 19 18 17 22 22 N 1.31551 * 120.00136 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99724 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47005 * 60.00141 * 23 21 19 25 25 H 1.48502 * 109.47218 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47297 * 299.99699 * 23 21 19 27 27 C 1.38083 * 119.96611 * 89.99703 * 13 12 11 28 28 H 1.08998 * 109.47324 * 59.99933 * 1 2 3 29 29 H 1.09000 * 109.47289 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46931 * 299.99784 * 1 2 3 31 31 H 1.08999 * 109.46474 * 240.00234 * 2 1 3 32 32 H 1.08998 * 109.47324 * 120.00067 * 2 1 3 33 33 H 1.09004 * 109.47071 * 304.99814 * 3 2 1 34 34 H 1.09000 * 109.47645 * 303.70974 * 4 3 2 35 35 H 1.09009 * 109.46989 * 63.70511 * 4 3 2 36 36 H 1.08999 * 109.47869 * 304.79326 * 5 4 3 37 37 H 1.08999 * 109.47172 * 64.79551 * 5 4 3 38 38 H 1.09008 * 109.47193 * 184.78798 * 5 4 3 39 39 H 1.09004 * 109.46790 * 180.02562 * 8 6 3 40 40 H 1.09002 * 109.46913 * 299.99606 * 8 6 3 41 41 H 1.09002 * 109.47242 * 60.00106 * 8 6 3 42 42 H 0.97004 * 119.99653 * 359.71781 * 11 9 6 43 43 H 1.09004 * 109.46858 * 299.99560 * 12 11 9 44 44 H 1.09002 * 109.47537 * 59.99356 * 12 11 9 45 45 H 1.08000 * 119.93112 * 0.02562 * 14 13 12 46 46 H 1.08001 * 119.96258 * 180.25673 * 15 14 13 47 47 H 1.07996 * 120.03926 * 179.72244 * 16 15 14 48 48 H 0.97008 * 119.99897 * 180.02562 * 22 21 19 49 49 H 1.07998 * 120.03387 * 359.95447 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6353 2.1266 1.3073 5 6 2.0642 3.5946 1.2688 6 6 3.5648 1.4443 -0.1258 7 1 3.9376 2.4621 -0.0105 8 6 4.1674 0.5540 0.9627 9 6 3.9577 0.9160 -1.4814 10 8 3.1064 0.5108 -2.2443 11 7 5.2555 0.8886 -1.8438 12 6 5.6379 0.3696 -3.1593 13 6 7.1347 0.4495 -3.3151 14 6 7.7133 1.5831 -3.8569 15 6 9.0868 1.6622 -3.9970 16 6 9.8844 0.6045 -3.6059 17 6 9.3061 -0.5370 -3.0667 18 8 10.0874 -1.5784 -2.6818 19 6 11.4221 -1.3965 -2.7401 20 1 11.8243 -0.4285 -3.0000 21 6 12.2781 -2.4523 -2.4662 22 7 11.7881 -3.6312 -2.1491 23 14 14.1273 -2.2001 -2.5462 24 1 14.5266 -1.1526 -1.5723 25 1 14.8154 -3.4732 -2.2129 26 1 14.5101 -1.7740 -3.9163 27 6 7.9267 -0.6112 -2.9222 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6053 1.9815 -0.8419 34 1 0.5537 2.0671 1.4289 35 1 2.1230 1.6274 2.1447 36 1 3.1327 3.6558 1.0624 37 1 1.5125 4.1139 0.4852 38 1 1.8528 4.0603 2.2314 39 1 5.2538 0.5557 0.8733 40 1 3.8833 0.9362 1.9432 41 1 3.7945 -0.4638 0.8474 42 1 5.9363 1.2128 -1.2336 43 1 5.3181 -0.6688 -3.2471 44 1 5.1596 0.9641 -3.9377 45 1 7.0915 2.4097 -4.1672 46 1 9.5359 2.5503 -4.4166 47 1 10.9567 0.6651 -3.7198 48 1 12.3871 -4.3697 -1.9572 49 1 7.4740 -1.4975 -2.5028 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341293190.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:26 Heat of formation + Delta-G solvation = -70.262262 kcal Electronic energy + Delta-G solvation = -26490.863851 eV Core-core repulsion = 22803.585852 eV Total energy + Delta-G solvation = -3687.277999 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.30716 -39.14237 -37.49486 -36.66517 -34.50854 -32.41058 -32.23298 -31.81671 -30.52066 -29.13033 -26.52539 -26.19912 -25.25489 -24.05133 -22.78830 -21.73359 -20.92749 -20.68158 -19.01066 -17.87598 -17.30019 -16.79027 -16.13678 -15.50131 -15.16622 -14.84038 -14.78976 -14.63559 -14.41249 -14.26347 -14.06342 -13.69669 -13.57469 -13.19171 -12.97296 -12.69474 -12.53578 -12.40765 -12.27328 -12.13149 -11.99931 -11.79723 -11.69416 -11.46329 -11.37977 -11.18666 -10.93400 -10.85245 -10.72716 -10.59011 -10.53627 -10.49859 -10.34904 -9.57168 -9.45365 -8.93161 -8.90267 -8.25199 -7.34995 -6.51102 -4.10702 1.89249 2.25065 2.71596 3.08932 3.09648 3.13081 3.40667 3.90965 4.44912 4.48293 4.59510 4.65394 4.90890 4.95372 5.03731 5.04252 5.09378 5.15908 5.20591 5.26015 5.33724 5.41581 5.49572 5.52680 5.61978 5.70353 5.73196 5.73871 5.77967 5.82814 5.84277 5.92696 5.93811 5.98938 6.05503 6.06912 6.18763 6.23456 6.34369 6.37762 6.53603 6.55816 6.79822 6.97801 7.16830 7.24946 7.33243 7.60684 7.70223 7.92796 8.31164 8.94104 9.62732 10.66563 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.019483 B = 0.002346 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.801779 B =11932.871059 C =12319.119929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.128 4.128 3 C -0.065 4.065 4 C -0.124 4.124 5 C -0.157 4.157 6 C -0.110 4.110 7 H 0.097 0.903 8 C -0.149 4.149 9 C 0.514 3.486 10 O -0.542 6.542 11 N -0.721 5.721 12 C 0.167 3.833 13 C -0.072 4.072 14 C -0.196 4.196 15 C -0.076 4.076 16 C -0.226 4.226 17 C 0.150 3.850 18 O -0.176 6.176 19 C -0.394 4.394 20 H 0.091 0.909 21 C 0.040 3.960 22 N -0.861 5.861 23 Si 0.941 3.059 24 H -0.270 1.270 25 H -0.277 1.277 26 H -0.270 1.270 27 C -0.171 4.171 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.083 0.917 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.402 0.598 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.106 0.894 46 H 0.109 0.891 47 H 0.128 0.872 48 H 0.271 0.729 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.642 11.727 5.978 20.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C -0.084 4.084 4 C -0.161 4.161 5 C -0.214 4.214 6 C -0.131 4.131 7 H 0.115 0.885 8 C -0.206 4.206 9 C 0.301 3.699 10 O -0.419 6.419 11 N -0.372 5.372 12 C 0.045 3.955 13 C -0.073 4.073 14 C -0.215 4.215 15 C -0.094 4.094 16 C -0.245 4.245 17 C 0.096 3.904 18 O -0.079 6.079 19 C -0.470 4.470 20 H 0.109 0.891 21 C -0.164 4.164 22 N -0.495 5.495 23 Si 0.765 3.235 24 H -0.195 1.195 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.191 4.191 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.101 0.899 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.237 0.763 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.124 0.876 46 H 0.127 0.873 47 H 0.145 0.855 48 H 0.081 0.919 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -16.211 10.943 5.563 20.334 hybrid contribution 1.487 0.354 0.114 1.533 sum -14.723 11.297 5.678 19.407 Atomic orbital electron populations 1.21782 0.96324 1.01204 1.01345 1.21756 0.95591 0.96238 1.02944 1.20961 0.92404 0.97085 0.97964 1.21695 1.01337 0.95542 0.97530 1.21865 1.01608 0.96437 1.01477 1.21421 0.97792 1.01188 0.92673 0.88524 1.21885 1.00868 1.00067 0.97801 1.20678 0.82213 0.78269 0.88754 1.90651 1.49677 1.47627 1.53991 1.46179 1.07867 1.64607 1.18534 1.20136 0.91227 0.99718 0.84444 1.19278 0.93205 0.94479 1.00341 1.20474 0.94655 0.98227 1.08178 1.20748 0.93406 0.97355 0.97923 1.21243 1.00768 0.95142 1.07390 1.19340 0.90928 0.88226 0.91876 1.83996 1.18375 1.33039 1.72475 1.21266 0.77961 0.98101 1.49645 0.89125 1.25294 1.00422 0.94337 0.96388 1.70025 1.36019 1.01063 1.42424 0.85783 0.80420 0.78112 0.79144 1.19468 1.20228 1.19467 1.20076 0.90993 0.99836 1.08218 0.92886 0.93157 0.93058 0.89868 0.92374 0.90592 0.91540 0.91695 0.92441 0.92818 0.92908 0.92002 0.91307 0.91576 0.76324 0.90968 0.91078 0.87556 0.87304 0.85473 0.91870 0.86442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.67 37.16 0.36 -0.99 16 2 C -0.13 -1.31 4.48 -26.73 -0.12 -1.43 16 3 C -0.07 -0.62 1.29 -90.62 -0.12 -0.73 16 4 C -0.12 -0.93 5.12 -26.74 -0.14 -1.06 16 5 C -0.16 -1.08 9.76 37.15 0.36 -0.72 16 6 C -0.11 -1.05 2.36 -91.77 -0.22 -1.27 16 7 H 0.10 0.80 6.14 -51.93 -0.32 0.48 16 8 C -0.15 -1.31 8.38 37.16 0.31 -1.00 16 9 C 0.51 6.63 6.86 -10.98 -0.08 6.56 16 10 O -0.54 -8.69 13.96 5.56 0.08 -8.61 16 11 N -0.72 -9.20 5.47 -61.47 -0.34 -9.53 16 12 C 0.17 2.44 5.80 -5.20 -0.03 2.41 16 13 C -0.07 -1.21 5.25 -104.65 -0.55 -1.76 16 14 C -0.20 -3.17 9.70 -39.53 -0.38 -3.56 16 15 C -0.08 -1.32 10.04 -39.61 -0.40 -1.71 16 16 C -0.23 -4.68 9.14 -39.39 -0.36 -5.04 16 17 C 0.15 3.48 6.65 -39.10 -0.26 3.22 16 18 O -0.18 -4.86 9.76 0.05 0.00 -4.86 16 19 C -0.39 -10.70 9.44 30.89 0.29 -10.41 16 20 H 0.09 2.27 5.29 -52.48 -0.28 1.99 16 21 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 22 N -0.86 -24.80 13.67 55.48 0.76 -24.05 16 23 Si 0.94 20.03 29.55 -169.99 -5.02 15.01 16 24 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 25 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 26 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 27 C -0.17 -3.43 9.65 -39.39 -0.38 -3.81 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.40 6.49 -51.93 -0.34 0.06 16 31 H 0.08 1.08 5.89 -51.93 -0.31 0.78 16 32 H 0.06 0.55 6.64 -51.93 -0.34 0.21 16 33 H 0.08 0.83 7.96 -51.93 -0.41 0.41 16 34 H 0.07 0.48 6.40 -51.93 -0.33 0.15 16 35 H 0.06 0.46 6.46 -51.92 -0.34 0.13 16 36 H 0.06 0.39 6.18 -51.93 -0.32 0.07 16 37 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.05 0.33 8.14 -51.92 -0.42 -0.10 16 39 H 0.06 0.54 7.79 -51.93 -0.40 0.14 16 40 H 0.07 0.50 6.54 -51.93 -0.34 0.16 16 41 H 0.07 0.64 6.44 -51.93 -0.33 0.30 16 42 H 0.40 4.62 8.12 -40.82 -0.33 4.29 16 43 H 0.07 1.11 8.09 -51.93 -0.42 0.69 16 44 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 45 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 46 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 47 H 0.13 2.65 5.71 -52.49 -0.30 2.35 16 48 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 49 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 LS Contribution 386.07 15.07 5.82 5.82 Total: -1.00 -30.40 386.07 -8.13 -38.53 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -7.63 Total: 8.02 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: -1.80 Total: -20.33 kcal Atomic # 7 Polarization: -34.00 SS G_CDS: 0.42 Total: -33.58 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.08 Total: -13.47 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.40 -8.13 -38.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341293190.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.730 kcal (2) G-P(sol) polarization free energy of solvation -30.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds