Wall clock time and date at job start Tue Mar 31 2020 12:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46774 * 2 1 4 4 C 1.52991 * 109.47443 * 65.00240 * 3 2 1 5 5 C 1.52994 * 109.47291 * 183.70418 * 4 3 2 6 6 C 1.53003 * 109.46676 * 185.00358 * 3 2 1 7 7 H 1.09002 * 109.46978 * 186.47879 * 6 3 2 8 8 C 1.52996 * 109.47116 * 306.47934 * 6 3 2 9 9 C 1.50704 * 109.47301 * 66.48044 * 6 3 2 10 10 O 1.21281 * 119.99981 * 356.38614 * 9 6 3 11 11 N 1.34774 * 120.00166 * 176.66774 * 9 6 3 12 12 C 1.46496 * 120.00185 * 179.72737 * 11 9 6 13 13 C 1.50699 * 109.47127 * 179.97438 * 12 11 9 14 14 C 1.38322 * 119.96328 * 269.71658 * 13 12 11 15 15 C 1.38283 * 120.13608 * 179.76752 * 14 13 12 16 16 C 1.38122 * 120.07130 * 0.51107 * 15 14 13 17 17 C 1.38862 * 119.92825 * 359.74974 * 16 15 14 18 18 O 1.35755 * 120.06909 * 179.97438 * 17 16 15 19 19 C 1.34826 * 116.99823 * 5.65968 * 18 17 16 20 20 H 1.08003 * 119.99857 * 5.23615 * 19 18 17 21 21 C 1.38652 * 119.99651 * 185.23963 * 19 18 17 22 22 N 1.31551 * 120.00136 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99724 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47005 * 60.00141 * 23 21 19 25 25 H 1.48502 * 109.47218 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47297 * 299.99699 * 23 21 19 27 27 C 1.38083 * 119.96611 * 89.99703 * 13 12 11 28 28 H 1.08998 * 109.47324 * 59.99933 * 1 2 3 29 29 H 1.09000 * 109.47289 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46931 * 299.99784 * 1 2 3 31 31 H 1.08999 * 109.46474 * 240.00234 * 2 1 3 32 32 H 1.08998 * 109.47324 * 120.00067 * 2 1 3 33 33 H 1.09004 * 109.47071 * 304.99814 * 3 2 1 34 34 H 1.09000 * 109.47645 * 303.70974 * 4 3 2 35 35 H 1.09009 * 109.46989 * 63.70511 * 4 3 2 36 36 H 1.08999 * 109.47869 * 304.79326 * 5 4 3 37 37 H 1.08999 * 109.47172 * 64.79551 * 5 4 3 38 38 H 1.09008 * 109.47193 * 184.78798 * 5 4 3 39 39 H 1.09004 * 109.46790 * 180.02562 * 8 6 3 40 40 H 1.09002 * 109.46913 * 299.99606 * 8 6 3 41 41 H 1.09002 * 109.47242 * 60.00106 * 8 6 3 42 42 H 0.97004 * 119.99653 * 359.71781 * 11 9 6 43 43 H 1.09004 * 109.46858 * 299.99560 * 12 11 9 44 44 H 1.09002 * 109.47537 * 59.99356 * 12 11 9 45 45 H 1.08000 * 119.93112 * 0.02562 * 14 13 12 46 46 H 1.08001 * 119.96258 * 180.25673 * 15 14 13 47 47 H 1.07996 * 120.03926 * 179.72244 * 16 15 14 48 48 H 0.97008 * 119.99897 * 180.02562 * 22 21 19 49 49 H 1.07998 * 120.03387 * 359.95447 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6353 2.1266 1.3073 5 6 2.0642 3.5946 1.2688 6 6 3.5648 1.4443 -0.1258 7 1 3.9376 2.4621 -0.0105 8 6 4.1674 0.5540 0.9627 9 6 3.9577 0.9160 -1.4814 10 8 3.1064 0.5108 -2.2443 11 7 5.2555 0.8886 -1.8438 12 6 5.6379 0.3696 -3.1593 13 6 7.1347 0.4495 -3.3151 14 6 7.7133 1.5831 -3.8569 15 6 9.0868 1.6622 -3.9970 16 6 9.8844 0.6045 -3.6059 17 6 9.3061 -0.5370 -3.0667 18 8 10.0874 -1.5784 -2.6818 19 6 11.4221 -1.3965 -2.7401 20 1 11.8243 -0.4285 -3.0000 21 6 12.2781 -2.4523 -2.4662 22 7 11.7881 -3.6312 -2.1491 23 14 14.1273 -2.2001 -2.5462 24 1 14.5266 -1.1526 -1.5723 25 1 14.8154 -3.4732 -2.2129 26 1 14.5101 -1.7740 -3.9163 27 6 7.9267 -0.6112 -2.9222 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6053 1.9815 -0.8419 34 1 0.5537 2.0671 1.4289 35 1 2.1230 1.6274 2.1447 36 1 3.1327 3.6558 1.0624 37 1 1.5125 4.1139 0.4852 38 1 1.8528 4.0603 2.2314 39 1 5.2538 0.5557 0.8733 40 1 3.8833 0.9362 1.9432 41 1 3.7945 -0.4638 0.8474 42 1 5.9363 1.2128 -1.2336 43 1 5.3181 -0.6688 -3.2471 44 1 5.1596 0.9641 -3.9377 45 1 7.0915 2.4097 -4.1672 46 1 9.5359 2.5503 -4.4166 47 1 10.9567 0.6651 -3.7198 48 1 12.3871 -4.3697 -1.9572 49 1 7.4740 -1.4975 -2.5028 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341293190.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:25 Heat of formation + Delta-G solvation = -87.658061 kcal Electronic energy + Delta-G solvation = -26491.618189 eV Core-core repulsion = 22803.585852 eV Total energy + Delta-G solvation = -3688.032337 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.35224 -40.74545 -38.71062 -37.97863 -35.75212 -34.29776 -33.20655 -32.49574 -31.80362 -30.72426 -27.66720 -27.23232 -26.96364 -24.95092 -23.49398 -23.26751 -22.47236 -21.70755 -20.00018 -19.44526 -18.84854 -18.00452 -17.19096 -16.82619 -16.61117 -16.19667 -16.08773 -15.78096 -15.52937 -15.37960 -15.20413 -14.96383 -14.85700 -14.33759 -14.07107 -13.93297 -13.78372 -13.56088 -13.31051 -13.18649 -13.02189 -12.96504 -12.72991 -12.53156 -12.48127 -12.39204 -12.28577 -12.17397 -12.13831 -11.86571 -11.38289 -11.26218 -11.24870 -11.06190 -10.81764 -10.59023 -10.06297 -9.74507 -9.04147 -8.47447 -6.16062 0.38207 0.69739 1.35559 1.45811 1.51639 1.68207 2.17051 2.30003 2.85536 3.17003 3.37878 3.67928 3.78502 3.85301 3.88317 4.08498 4.20487 4.29956 4.32877 4.39442 4.41457 4.46230 4.52330 4.53070 4.63830 4.65722 4.71317 4.75895 4.82735 4.93941 4.98743 5.00824 5.07035 5.10641 5.12900 5.18671 5.24746 5.25790 5.33013 5.34264 5.42372 5.51706 5.60524 5.62123 5.64577 5.69946 5.71037 6.00702 6.15781 6.57956 6.97254 7.27579 7.77417 8.75488 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.019483 B = 0.002346 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.801779 B =11932.871059 C =12319.119929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.128 4.128 3 C -0.062 4.062 4 C -0.118 4.118 5 C -0.157 4.157 6 C -0.102 4.102 7 H 0.118 0.882 8 C -0.147 4.147 9 C 0.512 3.488 10 O -0.575 6.575 11 N -0.716 5.716 12 C 0.174 3.826 13 C -0.058 4.058 14 C -0.170 4.170 15 C -0.069 4.069 16 C -0.235 4.235 17 C 0.113 3.887 18 O -0.232 6.232 19 C -0.413 4.413 20 H 0.103 0.897 21 C -0.023 4.023 22 N -0.921 5.921 23 Si 1.018 2.982 24 H -0.256 1.256 25 H -0.274 1.274 26 H -0.257 1.257 27 C -0.182 4.182 28 H 0.044 0.956 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.049 0.951 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.090 0.910 41 H 0.053 0.947 42 H 0.410 0.590 43 H 0.059 0.941 44 H 0.084 0.916 45 H 0.147 0.853 46 H 0.149 0.851 47 H 0.121 0.879 48 H 0.272 0.728 49 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.171 15.216 6.331 23.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.165 4.165 3 C -0.080 4.080 4 C -0.155 4.155 5 C -0.214 4.214 6 C -0.123 4.123 7 H 0.136 0.864 8 C -0.204 4.204 9 C 0.300 3.700 10 O -0.455 6.455 11 N -0.368 5.368 12 C 0.050 3.950 13 C -0.059 4.059 14 C -0.188 4.188 15 C -0.087 4.087 16 C -0.254 4.254 17 C 0.062 3.938 18 O -0.138 6.138 19 C -0.489 4.489 20 H 0.121 0.879 21 C -0.220 4.220 22 N -0.559 5.559 23 Si 0.837 3.163 24 H -0.180 1.180 25 H -0.199 1.199 26 H -0.181 1.181 27 C -0.202 4.202 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.108 0.892 41 H 0.072 0.928 42 H 0.246 0.754 43 H 0.077 0.923 44 H 0.102 0.898 45 H 0.165 0.835 46 H 0.167 0.833 47 H 0.139 0.861 48 H 0.081 0.919 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -16.770 14.492 5.913 22.939 hybrid contribution 1.341 -0.528 -0.081 1.444 sum -15.429 13.963 5.832 21.611 Atomic orbital electron populations 1.21765 0.95465 1.01421 1.01774 1.21714 0.96416 0.96703 1.01682 1.20921 0.92083 0.96409 0.98632 1.21657 1.01732 0.95846 0.96310 1.21868 1.01688 0.95845 1.01982 1.21458 0.98050 1.02169 0.90639 0.86432 1.21894 1.00742 0.99297 0.98508 1.21299 0.81600 0.77452 0.89637 1.90647 1.50529 1.49034 1.55265 1.46099 1.08283 1.64416 1.17988 1.19996 0.89517 0.99549 0.85894 1.19454 0.94023 0.93547 0.98826 1.20986 0.94710 0.98359 1.04786 1.21164 0.93639 0.97366 0.96511 1.21378 1.01032 0.95436 1.07567 1.19863 0.91799 0.88576 0.93521 1.83959 1.18883 1.35442 1.75552 1.21771 0.78449 0.98929 1.49710 0.87946 1.26584 1.05854 0.93787 0.95816 1.70180 1.37953 1.02327 1.45463 0.84662 0.73439 0.78372 0.79860 1.18013 1.19855 1.18144 1.20200 0.90343 1.00776 1.08840 0.93684 0.93112 0.91334 0.93076 0.91620 0.92215 0.91110 0.90821 0.92170 0.93150 0.91893 0.92015 0.89161 0.92830 0.75369 0.92279 0.89773 0.83504 0.83329 0.86139 0.91860 0.87601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.67 71.98 0.70 -1.85 16 2 C -0.13 -2.55 4.48 30.60 0.14 -2.42 16 3 C -0.06 -1.07 1.29 -10.80 -0.01 -1.09 16 4 C -0.12 -1.47 5.12 30.59 0.16 -1.31 16 5 C -0.16 -1.72 9.76 71.98 0.70 -1.02 16 6 C -0.10 -1.78 2.36 -11.54 -0.03 -1.80 16 7 H 0.12 1.59 6.14 -2.39 -0.01 1.57 16 8 C -0.15 -2.32 8.38 71.98 0.60 -1.72 16 9 C 0.51 12.64 6.86 87.66 0.60 13.24 16 10 O -0.58 -18.34 13.96 -3.03 -0.04 -18.38 16 11 N -0.72 -17.11 5.47 -466.79 -2.55 -19.66 16 12 C 0.17 4.79 5.80 85.63 0.50 5.28 16 13 C -0.06 -1.83 5.25 -19.88 -0.10 -1.94 16 14 C -0.17 -4.79 9.70 22.30 0.22 -4.57 16 15 C -0.07 -2.15 10.04 22.25 0.22 -1.92 16 16 C -0.23 -9.61 9.14 22.39 0.20 -9.41 16 17 C 0.11 5.39 6.65 22.58 0.15 5.54 16 18 O -0.23 -13.64 9.76 -22.75 -0.22 -13.86 16 19 C -0.41 -23.46 9.44 67.92 0.64 -22.81 16 20 H 0.10 5.28 5.29 -2.91 -0.02 5.27 16 21 C -0.02 -1.28 5.49 84.83 0.47 -0.81 16 22 N -0.92 -56.07 13.67 21.61 0.30 -55.78 16 23 Si 1.02 41.95 29.55 68.60 2.03 43.98 16 24 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 25 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 26 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 27 C -0.18 -7.43 9.65 22.39 0.22 -7.22 16 28 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.05 0.85 8.14 -2.39 -0.02 0.84 16 30 H 0.07 0.94 6.49 -2.39 -0.02 0.93 16 31 H 0.05 1.36 5.89 -2.39 -0.01 1.35 16 32 H 0.07 1.19 6.64 -2.39 -0.02 1.17 16 33 H 0.06 1.25 7.96 -2.38 -0.02 1.23 16 34 H 0.07 0.84 6.40 -2.39 -0.02 0.82 16 35 H 0.07 0.81 6.46 -2.38 -0.02 0.79 16 36 H 0.06 0.62 6.18 -2.39 -0.01 0.61 16 37 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 39 H 0.06 0.98 7.79 -2.38 -0.02 0.96 16 40 H 0.09 1.05 6.54 -2.39 -0.02 1.04 16 41 H 0.05 0.99 6.44 -2.39 -0.02 0.97 16 42 H 0.41 8.55 8.12 -92.71 -0.75 7.80 16 43 H 0.06 1.81 8.09 -2.38 -0.02 1.79 16 44 H 0.08 2.16 8.08 -2.39 -0.02 2.14 16 45 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 46 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 47 H 0.12 5.03 5.71 -2.91 -0.02 5.01 16 48 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16 49 H 0.11 4.48 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -71.43 386.07 5.08 -66.35 By element: Atomic # 1 Polarization: 32.96 SS G_CDS: 0.20 Total: 33.16 kcal Atomic # 6 Polarization: -41.18 SS G_CDS: 5.37 Total: -35.81 kcal Atomic # 7 Polarization: -73.18 SS G_CDS: -2.26 Total: -75.44 kcal Atomic # 8 Polarization: -31.98 SS G_CDS: -0.26 Total: -32.25 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -71.43 5.08 -66.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341293190.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.305 kcal (2) G-P(sol) polarization free energy of solvation -71.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds