Wall clock time and date at job start Tue Mar 31 2020 12:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47011 * 2 1 4 4 C 1.52991 * 109.47194 * 304.40166 * 3 2 1 5 5 C 1.52994 * 109.47334 * 295.67261 * 4 3 2 6 6 C 1.53003 * 109.47126 * 64.40360 * 3 2 1 7 7 H 1.09005 * 109.47172 * 300.00300 * 6 3 2 8 8 C 1.52997 * 109.47416 * 180.02562 * 6 3 2 9 9 C 1.50701 * 109.47236 * 59.99576 * 6 3 2 10 10 O 1.21279 * 119.99981 * 0.02562 * 9 6 3 11 11 N 1.34776 * 120.00257 * 180.02562 * 9 6 3 12 12 C 1.46496 * 120.00359 * 180.02562 * 11 9 6 13 13 C 1.50699 * 109.47410 * 179.97438 * 12 11 9 14 14 C 1.38319 * 119.96604 * 270.02262 * 13 12 11 15 15 C 1.38285 * 120.13663 * 179.97438 * 14 13 12 16 16 C 1.38124 * 120.06817 * 359.76998 * 15 14 13 17 17 C 1.38856 * 119.92815 * 0.50533 * 16 15 14 18 18 O 1.35756 * 120.06533 * 179.74616 * 17 16 15 19 19 C 1.34829 * 117.00090 * 354.01986 * 18 17 16 20 20 H 1.08002 * 120.00007 * 5.04233 * 19 18 17 21 21 C 1.38650 * 119.99845 * 185.04104 * 19 18 17 22 22 N 1.31559 * 120.00432 * 359.97438 * 21 19 18 23 23 Si 1.86809 * 119.99834 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47052 * 89.99801 * 23 21 19 25 25 H 1.48501 * 109.46733 * 209.99850 * 23 21 19 26 26 H 1.48498 * 109.47032 * 329.99552 * 23 21 19 27 27 C 1.38080 * 119.96222 * 90.00081 * 13 12 11 28 28 H 1.09003 * 109.47211 * 305.32352 * 1 2 3 29 29 H 1.09000 * 109.47290 * 65.32419 * 1 2 3 30 30 H 1.09005 * 109.46883 * 185.32720 * 1 2 3 31 31 H 1.08994 * 109.47583 * 239.99884 * 2 1 3 32 32 H 1.09001 * 109.47037 * 119.99947 * 2 1 3 33 33 H 1.09004 * 109.47141 * 184.39618 * 3 2 1 34 34 H 1.09004 * 109.46974 * 55.67617 * 4 3 2 35 35 H 1.09007 * 109.47050 * 175.67042 * 4 3 2 36 36 H 1.09003 * 109.47186 * 185.15439 * 5 4 3 37 37 H 1.09002 * 109.47294 * 305.15293 * 5 4 3 38 38 H 1.08994 * 109.47211 * 65.15296 * 5 4 3 39 39 H 1.09001 * 109.46548 * 299.99687 * 8 6 3 40 40 H 1.08996 * 109.47280 * 59.99372 * 8 6 3 41 41 H 1.08996 * 109.46968 * 180.02562 * 8 6 3 42 42 H 0.97010 * 119.99904 * 359.97438 * 11 9 6 43 43 H 1.09010 * 109.47034 * 59.99505 * 12 11 9 44 44 H 1.08994 * 109.47262 * 300.00180 * 12 11 9 45 45 H 1.07997 * 119.93710 * 359.97438 * 14 13 12 46 46 H 1.08000 * 119.96550 * 180.02562 * 15 14 13 47 47 H 1.07999 * 120.03247 * 180.27477 * 16 15 14 48 48 H 0.97001 * 120.00096 * 179.97438 * 22 21 19 49 49 H 1.07995 * 120.03850 * 0.04160 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4416 2.1950 -1.1901 5 6 1.9461 1.5721 -2.4933 6 6 1.6224 2.1311 1.3010 7 1 0.5352 2.1300 1.3799 8 6 2.1318 3.5738 1.3007 9 6 2.2117 1.3899 2.4733 10 8 2.8985 0.4079 2.2866 11 7 1.9756 1.8182 3.7291 12 6 2.5490 1.0980 4.8687 13 6 2.1376 1.7761 6.1501 14 6 2.9249 2.7802 6.6841 15 6 2.5505 3.4052 7.8594 16 6 1.3860 3.0315 8.5014 17 6 0.5965 2.0199 7.9709 18 8 -0.5460 1.6469 8.6023 19 6 -0.7940 2.2097 9.8021 20 1 -0.1411 2.9818 10.1818 21 6 -1.8871 1.7972 10.5486 22 7 -2.6828 0.8572 10.0860 23 14 -2.2312 2.5775 12.2107 24 1 -3.1137 3.7580 12.0302 25 1 -2.9016 1.5884 13.0925 26 1 -0.9516 3.0060 12.8307 27 6 0.9748 1.3947 6.7897 28 1 -0.3634 0.5942 0.8385 29 1 -0.3634 0.4290 -0.9338 30 1 -0.3633 -1.0233 0.0954 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.1271 1.4436 -0.0788 34 1 0.3542 2.1284 -1.1526 35 1 1.7432 3.2416 -1.1471 36 1 1.5940 2.1632 -3.3387 37 1 3.0360 1.5558 -2.4901 38 1 1.5678 0.5535 -2.5794 39 1 3.2189 3.5751 1.2217 40 1 1.7052 4.1096 0.4529 41 1 1.8346 4.0641 2.2277 42 1 1.4265 2.6039 3.8785 43 1 3.6362 1.0997 4.7899 44 1 2.1864 0.0701 4.8686 45 1 3.8340 3.0767 6.1821 46 1 3.1672 4.1891 8.2736 47 1 1.0919 3.5231 9.4169 48 1 -3.4473 0.5684 10.6084 49 1 0.3606 0.6105 6.3725 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341293191.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:29 Heat of formation + Delta-G solvation = -67.554817 kcal Electronic energy + Delta-G solvation = -26526.270453 eV Core-core repulsion = 22839.109857 eV Total energy + Delta-G solvation = -3687.160595 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.33583 -39.14798 -37.50748 -36.67099 -34.53373 -32.65156 -32.32932 -31.30977 -30.58861 -29.14093 -26.58277 -26.18024 -25.23936 -23.72871 -23.40963 -21.73616 -20.86053 -20.34483 -19.13210 -17.88120 -17.23777 -16.76605 -16.00370 -15.70843 -15.43889 -15.17093 -14.76980 -14.48637 -14.42722 -14.11836 -13.92530 -13.62394 -13.46155 -13.15996 -12.97596 -12.79731 -12.56297 -12.44169 -12.29996 -12.14100 -11.96416 -11.76399 -11.67714 -11.54538 -11.38755 -11.16042 -10.95163 -10.84553 -10.72538 -10.60646 -10.53405 -10.48935 -10.33174 -9.51375 -9.42475 -8.92656 -8.90679 -8.25500 -7.35177 -6.51009 -4.10645 1.88841 2.24669 2.70653 3.08085 3.09774 3.14594 3.39553 3.90863 4.45059 4.47029 4.61944 4.65385 4.88466 4.92389 5.04021 5.05443 5.10742 5.19741 5.25560 5.28278 5.33506 5.36410 5.47063 5.52749 5.63849 5.65203 5.72395 5.75048 5.76585 5.82557 5.87122 5.89492 5.93042 5.98040 6.05735 6.10960 6.17461 6.23173 6.30234 6.44069 6.53471 6.60688 6.79511 6.97429 7.16743 7.25058 7.33474 7.60043 7.69812 7.93041 8.30858 8.94318 9.62769 10.66705 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.020351 B = 0.002355 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.498989 B =11885.196470 C =12538.740034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.134 4.134 3 C -0.064 4.064 4 C -0.126 4.126 5 C -0.151 4.151 6 C -0.110 4.110 7 H 0.099 0.901 8 C -0.147 4.147 9 C 0.516 3.484 10 O -0.541 6.541 11 N -0.721 5.721 12 C 0.167 3.833 13 C -0.072 4.072 14 C -0.195 4.195 15 C -0.076 4.076 16 C -0.226 4.226 17 C 0.150 3.850 18 O -0.176 6.176 19 C -0.393 4.393 20 H 0.092 0.908 21 C 0.040 3.960 22 N -0.861 5.861 23 Si 0.941 3.059 24 H -0.273 1.273 25 H -0.277 1.277 26 H -0.267 1.267 27 C -0.171 4.171 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.050 0.950 37 H 0.053 0.947 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.061 0.939 42 H 0.402 0.598 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.106 0.894 46 H 0.109 0.891 47 H 0.128 0.872 48 H 0.271 0.729 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.863 4.844 -18.198 20.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.171 4.171 3 C -0.083 4.083 4 C -0.163 4.163 5 C -0.209 4.209 6 C -0.132 4.132 7 H 0.117 0.883 8 C -0.204 4.204 9 C 0.303 3.697 10 O -0.419 6.419 11 N -0.372 5.372 12 C 0.045 3.955 13 C -0.073 4.073 14 C -0.215 4.215 15 C -0.094 4.094 16 C -0.245 4.245 17 C 0.097 3.903 18 O -0.079 6.079 19 C -0.469 4.469 20 H 0.110 0.890 21 C -0.165 4.165 22 N -0.495 5.495 23 Si 0.766 3.234 24 H -0.198 1.198 25 H -0.202 1.202 26 H -0.192 1.192 27 C -0.191 4.191 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.109 0.891 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.237 0.763 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.125 0.875 46 H 0.127 0.873 47 H 0.145 0.855 48 H 0.081 0.919 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 7.957 3.832 -18.297 20.317 hybrid contribution -0.481 0.851 1.120 1.487 sum 7.476 4.683 -17.177 19.310 Atomic orbital electron populations 1.21899 0.96588 1.01419 1.01358 1.21817 0.95335 0.96257 1.03676 1.20959 1.00629 0.94926 0.91762 1.21728 1.00957 0.99400 0.94244 1.21779 1.01143 1.00990 0.96951 1.21433 1.02011 0.96027 0.93695 0.88332 1.21850 1.01818 0.94052 1.02721 1.20631 0.80535 0.84568 0.84013 1.90616 1.39130 1.26831 1.85277 1.46188 1.53315 1.32200 1.05462 1.20138 0.98096 0.95282 0.82022 1.19275 0.95176 0.97363 0.95487 1.20472 1.01357 1.00831 0.98834 1.20748 0.95658 0.98281 0.94742 1.21240 0.97698 1.02046 1.03563 1.19326 0.86751 0.92197 0.92074 1.83982 1.32020 1.60240 1.31702 1.21322 1.12413 1.20339 0.92868 0.89038 1.25300 0.95294 0.96342 0.99546 1.70036 1.14574 1.26950 1.37986 0.85709 0.79034 0.78626 0.80050 1.19843 1.20205 1.19174 1.20084 0.98372 1.03908 0.96752 0.92867 0.92843 0.93100 0.92352 0.89112 0.90731 0.91521 0.91806 0.93075 0.92834 0.92522 0.92137 0.91168 0.92018 0.76322 0.91063 0.90950 0.87549 0.87298 0.85472 0.91935 0.86435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 9.13 37.16 0.34 -1.14 16 2 C -0.13 -1.41 5.07 -26.73 -0.14 -1.54 16 3 C -0.06 -0.60 1.40 -90.62 -0.13 -0.73 16 4 C -0.13 -0.95 4.84 -26.74 -0.13 -1.08 16 5 C -0.15 -1.08 9.52 37.15 0.35 -0.73 16 6 C -0.11 -1.06 2.07 -91.77 -0.19 -1.25 16 7 H 0.10 0.88 6.44 -51.93 -0.33 0.55 16 8 C -0.15 -1.16 8.74 37.16 0.32 -0.84 16 9 C 0.52 6.62 6.84 -10.99 -0.08 6.55 16 10 O -0.54 -8.60 13.67 5.56 0.08 -8.53 16 11 N -0.72 -9.17 5.44 -61.47 -0.33 -9.50 16 12 C 0.17 2.43 5.80 -5.20 -0.03 2.40 16 13 C -0.07 -1.21 5.25 -104.65 -0.55 -1.76 16 14 C -0.20 -3.15 9.70 -39.53 -0.38 -3.54 16 15 C -0.08 -1.31 10.04 -39.61 -0.40 -1.71 16 16 C -0.23 -4.68 9.17 -39.39 -0.36 -5.04 16 17 C 0.15 3.48 6.65 -39.11 -0.26 3.22 16 18 O -0.18 -4.88 9.76 0.04 0.00 -4.88 16 19 C -0.39 -10.71 9.49 30.88 0.29 -10.42 16 20 H 0.09 2.30 5.21 -52.49 -0.27 2.02 16 21 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 22 N -0.86 -24.83 13.67 55.48 0.76 -24.07 16 23 Si 0.94 20.08 29.55 -169.99 -5.02 15.06 16 24 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 25 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 26 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 27 C -0.17 -3.43 9.65 -39.40 -0.38 -3.81 16 28 H 0.05 0.52 6.31 -51.93 -0.33 0.19 16 29 H 0.05 0.44 6.58 -51.93 -0.34 0.10 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.58 6.89 -51.93 -0.36 0.22 16 32 H 0.09 1.21 5.43 -51.93 -0.28 0.93 16 33 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 34 H 0.07 0.49 6.23 -51.93 -0.32 0.17 16 35 H 0.06 0.44 6.21 -51.93 -0.32 0.11 16 36 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 0.42 6.91 -51.93 -0.36 0.06 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.46 6.33 -51.93 -0.33 0.13 16 41 H 0.06 0.47 7.56 -51.93 -0.39 0.08 16 42 H 0.40 4.61 7.88 -40.82 -0.32 4.29 16 43 H 0.07 1.01 8.09 -51.92 -0.42 0.59 16 44 H 0.07 1.11 8.08 -51.93 -0.42 0.69 16 45 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 46 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 47 H 0.13 2.64 5.65 -52.49 -0.30 2.35 16 48 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 49 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 LS Contribution 385.17 15.07 5.80 5.80 Total: -1.00 -30.37 385.17 -8.14 -38.51 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -7.61 Total: 8.05 kcal Atomic # 6 Polarization: -18.64 SS G_CDS: -1.80 Total: -20.44 kcal Atomic # 7 Polarization: -33.99 SS G_CDS: 0.42 Total: -33.57 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: 0.08 Total: -13.41 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.37 -8.14 -38.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341293191.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.044 kcal (2) G-P(sol) polarization free energy of solvation -30.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds