Wall clock time and date at job start Tue Mar 31 2020 12:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47011 * 2 1 4 4 C 1.52991 * 109.47194 * 304.40166 * 3 2 1 5 5 C 1.52994 * 109.47334 * 295.67261 * 4 3 2 6 6 C 1.53003 * 109.47126 * 64.40360 * 3 2 1 7 7 H 1.09005 * 109.47172 * 300.00300 * 6 3 2 8 8 C 1.52997 * 109.47416 * 180.02562 * 6 3 2 9 9 C 1.50701 * 109.47236 * 59.99576 * 6 3 2 10 10 O 1.21279 * 119.99981 * 0.02562 * 9 6 3 11 11 N 1.34776 * 120.00257 * 180.02562 * 9 6 3 12 12 C 1.46496 * 120.00359 * 180.02562 * 11 9 6 13 13 C 1.50699 * 109.47410 * 179.97438 * 12 11 9 14 14 C 1.38319 * 119.96604 * 270.02262 * 13 12 11 15 15 C 1.38285 * 120.13663 * 179.97438 * 14 13 12 16 16 C 1.38124 * 120.06817 * 359.76998 * 15 14 13 17 17 C 1.38856 * 119.92815 * 0.50533 * 16 15 14 18 18 O 1.35756 * 120.06533 * 179.74616 * 17 16 15 19 19 C 1.34829 * 117.00090 * 354.01986 * 18 17 16 20 20 H 1.08002 * 120.00007 * 5.04233 * 19 18 17 21 21 C 1.38650 * 119.99845 * 185.04104 * 19 18 17 22 22 N 1.31559 * 120.00432 * 359.97438 * 21 19 18 23 23 Si 1.86809 * 119.99834 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47052 * 89.99801 * 23 21 19 25 25 H 1.48501 * 109.46733 * 209.99850 * 23 21 19 26 26 H 1.48498 * 109.47032 * 329.99552 * 23 21 19 27 27 C 1.38080 * 119.96222 * 90.00081 * 13 12 11 28 28 H 1.09003 * 109.47211 * 305.32352 * 1 2 3 29 29 H 1.09000 * 109.47290 * 65.32419 * 1 2 3 30 30 H 1.09005 * 109.46883 * 185.32720 * 1 2 3 31 31 H 1.08994 * 109.47583 * 239.99884 * 2 1 3 32 32 H 1.09001 * 109.47037 * 119.99947 * 2 1 3 33 33 H 1.09004 * 109.47141 * 184.39618 * 3 2 1 34 34 H 1.09004 * 109.46974 * 55.67617 * 4 3 2 35 35 H 1.09007 * 109.47050 * 175.67042 * 4 3 2 36 36 H 1.09003 * 109.47186 * 185.15439 * 5 4 3 37 37 H 1.09002 * 109.47294 * 305.15293 * 5 4 3 38 38 H 1.08994 * 109.47211 * 65.15296 * 5 4 3 39 39 H 1.09001 * 109.46548 * 299.99687 * 8 6 3 40 40 H 1.08996 * 109.47280 * 59.99372 * 8 6 3 41 41 H 1.08996 * 109.46968 * 180.02562 * 8 6 3 42 42 H 0.97010 * 119.99904 * 359.97438 * 11 9 6 43 43 H 1.09010 * 109.47034 * 59.99505 * 12 11 9 44 44 H 1.08994 * 109.47262 * 300.00180 * 12 11 9 45 45 H 1.07997 * 119.93710 * 359.97438 * 14 13 12 46 46 H 1.08000 * 119.96550 * 180.02562 * 15 14 13 47 47 H 1.07999 * 120.03247 * 180.27477 * 16 15 14 48 48 H 0.97001 * 120.00096 * 179.97438 * 22 21 19 49 49 H 1.07995 * 120.03850 * 0.04160 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4416 2.1950 -1.1901 5 6 1.9461 1.5721 -2.4933 6 6 1.6224 2.1311 1.3010 7 1 0.5352 2.1300 1.3799 8 6 2.1318 3.5738 1.3007 9 6 2.2117 1.3899 2.4733 10 8 2.8985 0.4079 2.2866 11 7 1.9756 1.8182 3.7291 12 6 2.5490 1.0980 4.8687 13 6 2.1376 1.7761 6.1501 14 6 2.9249 2.7802 6.6841 15 6 2.5505 3.4052 7.8594 16 6 1.3860 3.0315 8.5014 17 6 0.5965 2.0199 7.9709 18 8 -0.5460 1.6469 8.6023 19 6 -0.7940 2.2097 9.8021 20 1 -0.1411 2.9818 10.1818 21 6 -1.8871 1.7972 10.5486 22 7 -2.6828 0.8572 10.0860 23 14 -2.2312 2.5775 12.2107 24 1 -3.1137 3.7580 12.0302 25 1 -2.9016 1.5884 13.0925 26 1 -0.9516 3.0060 12.8307 27 6 0.9748 1.3947 6.7897 28 1 -0.3634 0.5942 0.8385 29 1 -0.3634 0.4290 -0.9338 30 1 -0.3633 -1.0233 0.0954 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.1271 1.4436 -0.0788 34 1 0.3542 2.1284 -1.1526 35 1 1.7432 3.2416 -1.1471 36 1 1.5940 2.1632 -3.3387 37 1 3.0360 1.5558 -2.4901 38 1 1.5678 0.5535 -2.5794 39 1 3.2189 3.5751 1.2217 40 1 1.7052 4.1096 0.4529 41 1 1.8346 4.0641 2.2277 42 1 1.4265 2.6039 3.8785 43 1 3.6362 1.0997 4.7899 44 1 2.1864 0.0701 4.8686 45 1 3.8340 3.0767 6.1821 46 1 3.1672 4.1891 8.2736 47 1 1.0919 3.5231 9.4169 48 1 -3.4473 0.5684 10.6084 49 1 0.3606 0.6105 6.3725 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341293191.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:28 Heat of formation + Delta-G solvation = -84.905737 kcal Electronic energy + Delta-G solvation = -26527.022845 eV Core-core repulsion = 22839.109857 eV Total energy + Delta-G solvation = -3687.912988 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.37204 -40.75204 -38.71739 -37.98655 -35.76446 -34.29951 -33.48274 -32.00251 -31.91779 -30.73868 -27.68787 -27.26605 -26.94057 -24.60134 -24.16539 -23.26977 -22.43624 -21.33942 -20.01451 -19.52025 -18.86270 -17.91999 -17.10554 -16.76988 -16.63399 -16.46213 -16.11714 -16.07990 -15.54222 -15.36079 -15.23288 -14.84406 -14.66487 -14.32889 -13.94306 -13.86406 -13.73126 -13.65499 -13.42648 -13.18238 -13.04972 -13.00198 -12.60538 -12.55440 -12.50097 -12.39565 -12.28497 -12.21318 -12.11786 -11.83431 -11.43165 -11.26127 -11.22073 -11.06738 -10.82362 -10.52291 -10.05022 -9.74260 -9.04204 -8.47565 -6.16197 0.38141 0.69586 1.35469 1.44296 1.52831 1.68407 2.16954 2.29455 2.85474 3.15155 3.39637 3.69644 3.74573 3.85546 3.92571 4.08362 4.18239 4.29927 4.37017 4.39254 4.42698 4.46685 4.52067 4.53094 4.61750 4.64147 4.71401 4.75110 4.85749 4.95083 5.00265 5.01262 5.05902 5.11191 5.12851 5.17164 5.24072 5.24696 5.34048 5.36512 5.42151 5.45882 5.59293 5.61748 5.69737 5.71010 5.72287 6.00995 6.15749 6.57933 6.97232 7.28038 7.77386 8.75511 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.020351 B = 0.002355 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.498989 B =11885.196470 C =12538.740034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.133 4.133 3 C -0.060 4.060 4 C -0.121 4.121 5 C -0.152 4.152 6 C -0.105 4.105 7 H 0.109 0.891 8 C -0.143 4.143 9 C 0.513 3.487 10 O -0.573 6.573 11 N -0.716 5.716 12 C 0.174 3.826 13 C -0.058 4.058 14 C -0.169 4.169 15 C -0.069 4.069 16 C -0.234 4.234 17 C 0.112 3.888 18 O -0.232 6.232 19 C -0.412 4.412 20 H 0.104 0.896 21 C -0.024 4.024 22 N -0.921 5.921 23 Si 1.018 2.982 24 H -0.262 1.262 25 H -0.274 1.274 26 H -0.252 1.252 27 C -0.182 4.182 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.044 0.956 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.049 0.951 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.089 0.911 41 H 0.067 0.933 42 H 0.410 0.590 43 H 0.084 0.916 44 H 0.059 0.941 45 H 0.148 0.852 46 H 0.149 0.851 47 H 0.121 0.879 48 H 0.272 0.728 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.790 7.536 -19.349 22.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.170 4.170 3 C -0.079 4.079 4 C -0.158 4.158 5 C -0.209 4.209 6 C -0.126 4.126 7 H 0.126 0.874 8 C -0.201 4.201 9 C 0.302 3.698 10 O -0.453 6.453 11 N -0.368 5.368 12 C 0.050 3.950 13 C -0.058 4.058 14 C -0.188 4.188 15 C -0.087 4.087 16 C -0.254 4.254 17 C 0.062 3.938 18 O -0.139 6.139 19 C -0.488 4.488 20 H 0.121 0.879 21 C -0.221 4.221 22 N -0.559 5.559 23 Si 0.837 3.163 24 H -0.187 1.187 25 H -0.199 1.199 26 H -0.176 1.176 27 C -0.202 4.202 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.108 0.892 41 H 0.086 0.914 42 H 0.246 0.754 43 H 0.102 0.898 44 H 0.077 0.923 45 H 0.165 0.835 46 H 0.167 0.833 47 H 0.139 0.861 48 H 0.081 0.919 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 9.930 6.560 -19.484 22.831 hybrid contribution -0.790 0.013 1.219 1.453 sum 9.139 6.573 -18.264 21.455 Atomic orbital electron populations 1.21876 0.95760 1.01231 1.02090 1.21751 0.96027 0.96959 1.02259 1.20922 0.99867 0.94429 0.92686 1.21703 1.01098 0.99754 0.93243 1.21783 1.00979 1.00949 0.97204 1.21472 1.02320 0.96779 0.92043 0.87355 1.21860 1.01635 0.92631 1.03950 1.21247 0.79880 0.84158 0.84546 1.90617 1.40680 1.28307 1.85706 1.46107 1.53340 1.32285 1.05055 1.19996 0.98760 0.94605 0.81599 1.19452 0.93568 0.97021 0.95788 1.20984 1.01591 0.98506 0.97670 1.21167 0.94347 0.98652 0.94501 1.21373 0.98772 1.01504 1.03731 1.19856 0.86872 0.93875 0.93178 1.83949 1.34781 1.62459 1.32697 1.21824 1.12959 1.20734 0.93300 0.87881 1.26593 0.94838 0.96891 1.03804 1.70188 1.15874 1.29695 1.40180 0.84591 0.79424 0.77739 0.74502 1.18720 1.19852 1.17557 1.20207 0.99686 1.03922 0.96394 0.93205 0.91119 0.93655 0.92030 0.92255 0.92101 0.90966 0.90483 0.91886 0.93147 0.92991 0.92509 0.89204 0.91447 0.75381 0.89752 0.92279 0.83473 0.83306 0.86135 0.91883 0.87641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 9.13 71.98 0.66 -2.12 16 2 C -0.13 -2.75 5.07 30.59 0.16 -2.59 16 3 C -0.06 -1.06 1.40 -10.79 -0.02 -1.07 16 4 C -0.12 -1.52 4.84 30.59 0.15 -1.37 16 5 C -0.15 -1.86 9.52 71.98 0.69 -1.17 16 6 C -0.11 -1.83 2.07 -11.54 -0.02 -1.85 16 7 H 0.11 1.71 6.44 -2.38 -0.02 1.70 16 8 C -0.14 -1.84 8.74 71.98 0.63 -1.21 16 9 C 0.51 12.62 6.84 87.66 0.60 13.22 16 10 O -0.57 -18.14 13.67 -3.03 -0.04 -18.18 16 11 N -0.72 -17.04 5.44 -466.79 -2.54 -19.58 16 12 C 0.17 4.77 5.80 85.63 0.50 5.27 16 13 C -0.06 -1.82 5.25 -19.88 -0.10 -1.92 16 14 C -0.17 -4.74 9.70 22.30 0.22 -4.52 16 15 C -0.07 -2.13 10.04 22.25 0.22 -1.91 16 16 C -0.23 -9.57 9.17 22.39 0.21 -9.37 16 17 C 0.11 5.38 6.65 22.58 0.15 5.53 16 18 O -0.23 -13.68 9.76 -22.79 -0.22 -13.90 16 19 C -0.41 -23.47 9.49 67.92 0.64 -22.82 16 20 H 0.10 5.33 5.21 -2.91 -0.02 5.32 16 21 C -0.02 -1.33 5.49 84.83 0.47 -0.87 16 22 N -0.92 -56.12 13.67 21.61 0.30 -55.83 16 23 Si 1.02 42.09 29.55 68.60 2.03 44.12 16 24 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 25 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 26 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 27 C -0.18 -7.46 9.65 22.39 0.22 -7.24 16 28 H 0.05 0.93 6.31 -2.39 -0.02 0.91 16 29 H 0.07 1.04 6.58 -2.39 -0.02 1.02 16 30 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 31 H 0.06 1.20 6.89 -2.39 -0.02 1.18 16 32 H 0.06 1.63 5.43 -2.39 -0.01 1.62 16 33 H 0.06 1.24 8.10 -2.39 -0.02 1.22 16 34 H 0.07 0.85 6.23 -2.38 -0.01 0.84 16 35 H 0.08 0.79 6.21 -2.38 -0.01 0.77 16 36 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.05 0.68 6.91 -2.39 -0.02 0.66 16 39 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.09 0.83 6.33 -2.39 -0.02 0.81 16 41 H 0.07 0.80 7.56 -2.39 -0.02 0.78 16 42 H 0.41 8.52 7.88 -92.70 -0.73 7.79 16 43 H 0.08 2.15 8.09 -2.38 -0.02 2.13 16 44 H 0.06 1.80 8.08 -2.39 -0.02 1.79 16 45 H 0.15 3.12 8.06 -2.91 -0.02 3.09 16 46 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 47 H 0.12 5.02 5.65 -2.91 -0.02 5.00 16 48 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 49 H 0.11 4.47 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -71.40 385.17 5.09 -66.30 By element: Atomic # 1 Polarization: 32.87 SS G_CDS: 0.23 Total: 33.10 kcal Atomic # 6 Polarization: -41.39 SS G_CDS: 5.35 Total: -36.04 kcal Atomic # 7 Polarization: -73.16 SS G_CDS: -2.24 Total: -75.40 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -0.26 Total: -32.08 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -71.40 5.09 -66.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341293191.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.603 kcal (2) G-P(sol) polarization free energy of solvation -71.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds