Wall clock time and date at job start Tue Mar 31 2020 12:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 113.99982 * 2 1 4 4 H 1.09000 * 109.46848 * 10.11117 * 3 2 1 5 5 C 1.52994 * 109.46876 * 250.11467 * 3 2 1 6 6 N 1.46495 * 109.47362 * 65.33633 * 5 3 2 7 7 C 1.34781 * 120.00071 * 185.39334 * 6 5 3 8 8 O 1.21285 * 120.00035 * 359.97438 * 7 6 5 9 9 C 1.50698 * 119.99965 * 180.02562 * 7 6 5 10 10 H 1.09004 * 109.46958 * 299.99648 * 9 7 6 11 11 C 1.50696 * 109.47504 * 59.99466 * 9 7 6 12 12 H 1.08005 * 119.99557 * 33.29734 * 11 9 7 13 13 C 1.37877 * 120.00478 * 213.29368 * 11 9 7 14 14 N 1.31513 * 120.00221 * 188.06805 * 13 11 9 15 15 Si 1.86796 * 119.99683 * 8.07881 * 13 11 9 16 16 H 1.48502 * 109.47100 * 275.61361 * 15 13 11 17 17 H 1.48501 * 109.47385 * 35.61213 * 15 13 11 18 18 H 1.48502 * 109.47092 * 155.61761 * 15 13 11 19 19 C 1.50705 * 109.47250 * 180.02562 * 9 7 6 20 20 C 1.38235 * 119.99494 * 293.61634 * 19 9 7 21 21 C 1.38231 * 119.99933 * 179.78770 * 20 19 9 22 22 C 1.38241 * 119.99970 * 0.44032 * 21 20 19 23 23 C 1.38238 * 119.99623 * 359.81546 * 22 21 20 24 24 C 1.38230 * 120.00272 * 113.89085 * 19 9 7 25 25 C 1.52999 * 109.46941 * 130.11258 * 3 2 1 26 26 C 1.52997 * 109.47255 * 294.99588 * 25 3 2 27 27 C 1.52999 * 109.47064 * 175.00164 * 26 25 3 28 28 C 1.52998 * 109.47374 * 295.00110 * 26 25 3 29 29 H 1.08997 * 109.47016 * 185.28619 * 1 2 3 30 30 H 1.09003 * 109.47246 * 305.28403 * 1 2 3 31 31 H 1.09001 * 109.46965 * 65.28440 * 1 2 3 32 32 H 1.09002 * 109.46946 * 305.33233 * 5 3 2 33 33 H 1.09008 * 109.47057 * 185.33852 * 5 3 2 34 34 H 0.97000 * 119.99972 * 5.39116 * 6 5 3 35 35 H 0.97001 * 120.00294 * 180.02562 * 14 13 11 36 36 H 1.08006 * 120.00163 * 359.97438 * 20 19 9 37 37 H 1.08005 * 120.00423 * 180.27553 * 21 20 19 38 38 H 1.08000 * 120.00106 * 179.83579 * 22 21 20 39 39 H 1.08005 * 119.99580 * 179.97438 * 23 22 21 40 40 H 1.07998 * 120.00138 * 359.97438 * 24 19 9 41 41 H 1.08998 * 109.47073 * 54.99957 * 25 3 2 42 42 H 1.09001 * 109.46636 * 174.99562 * 25 3 2 43 43 H 1.09002 * 109.46747 * 55.00792 * 26 25 3 44 44 H 1.09001 * 109.47357 * 59.99894 * 27 26 25 45 45 H 1.09003 * 109.47280 * 180.02562 * 27 26 25 46 46 H 1.09005 * 109.47171 * 300.00103 * 27 26 25 47 47 H 1.08994 * 109.47451 * 300.00132 * 28 26 25 48 48 H 1.09003 * 109.46870 * 60.00283 * 28 26 25 49 49 H 1.08999 * 109.46981 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.2338 2.0489 0.1804 5 6 2.6659 1.5718 -1.3565 6 7 1.6356 1.6138 -2.3970 7 6 1.9902 1.7279 -3.6923 8 8 3.1623 1.7962 -3.9964 9 6 0.9303 1.7718 -4.7627 10 1 0.3431 0.8540 -4.7303 11 6 0.0269 2.9547 -4.5269 12 1 0.4269 3.8633 -4.1014 13 6 -1.3102 2.8772 -4.8545 14 7 -2.0642 3.9533 -4.7991 15 14 -2.0506 1.2437 -5.3767 16 1 -1.8158 1.0353 -6.8282 17 1 -1.4136 0.1435 -4.6093 18 1 -3.5111 1.2538 -5.1080 19 6 1.5856 1.9008 -6.1136 20 6 2.2773 3.0526 -6.4390 21 6 2.8821 3.1692 -7.6765 22 6 2.7876 2.1377 -8.5921 23 6 2.0914 0.9881 -8.2685 24 6 1.4902 0.8698 -7.0294 25 6 3.0667 1.3933 1.1032 26 6 2.3913 1.2511 2.4686 27 6 3.4587 1.2138 3.5642 28 6 1.4605 2.4423 2.7039 29 1 -0.3633 -1.0233 0.0947 30 1 -0.3634 0.5936 0.8389 31 1 -0.3633 0.4297 -0.9335 32 1 3.3755 0.7750 -1.5797 33 1 3.1902 2.5270 -1.3254 34 1 0.6981 1.5596 -2.1538 35 1 -3.0050 3.8987 -5.0292 36 1 2.3477 3.8601 -5.7253 37 1 3.4263 4.0673 -7.9292 38 1 3.2579 2.2299 -9.5599 39 1 2.0172 0.1824 -8.9840 40 1 0.9465 -0.0284 -6.7766 41 1 3.7953 0.5932 0.9731 42 1 3.5719 2.3575 1.0464 43 1 1.8130 0.3275 2.4934 44 1 4.0372 2.1373 3.5394 45 1 2.9776 1.1120 4.5369 46 1 4.1219 0.3651 3.3966 47 1 2.0389 3.3658 2.6791 48 1 0.7000 2.4688 1.9234 49 1 0.9790 2.3407 3.6764 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361410394.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:20 Heat of formation + Delta-G solvation = -82.980347 kcal Electronic energy + Delta-G solvation = -27495.599632 eV Core-core repulsion = 23807.770135 eV Total energy + Delta-G solvation = -3687.829496 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.53024 -38.75532 -37.67719 -35.84301 -33.94986 -33.63635 -31.51669 -30.61636 -30.09155 -27.91066 -27.38427 -26.32973 -25.73072 -23.48820 -21.85032 -21.69332 -20.92074 -20.07399 -19.18865 -17.15984 -16.84328 -16.53969 -16.09923 -15.73850 -15.32911 -14.63439 -14.59340 -14.53538 -14.27474 -13.94965 -13.88478 -13.59979 -13.30799 -12.95719 -12.69433 -12.63306 -12.50645 -12.45360 -12.35752 -12.04554 -11.83950 -11.79857 -11.52855 -11.28969 -11.10537 -11.05275 -10.92005 -10.71241 -10.50545 -10.41815 -10.25878 -9.94111 -9.55842 -9.54675 -8.93871 -8.70209 -8.38627 -8.09383 -7.78151 -6.32689 -4.36143 2.19474 2.25992 3.13657 3.19904 3.24437 3.61478 3.77392 3.88618 4.20235 4.60836 4.67196 4.78106 4.80395 4.99506 5.07234 5.11594 5.28286 5.39186 5.46254 5.49568 5.56886 5.58214 5.59106 5.63609 5.69299 5.73425 5.76021 5.81675 5.84772 5.88063 5.97914 6.00044 6.04020 6.16978 6.23889 6.27256 6.32287 6.35388 6.48479 6.77646 6.88820 7.11577 7.20721 7.21946 7.28835 7.29766 7.63065 7.83834 8.17833 8.28643 8.67718 9.13061 9.25906 10.78403 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014006 B = 0.003731 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.623426 B = 7502.180973 C = 8551.059768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.378 6.378 3 C 0.075 3.925 4 H 0.074 0.926 5 C 0.108 3.892 6 N -0.726 5.726 7 C 0.535 3.465 8 O -0.561 6.561 9 C 0.022 3.978 10 H 0.068 0.932 11 C -0.513 4.513 12 H 0.082 0.918 13 C 0.087 3.913 14 N -0.881 5.881 15 Si 0.863 3.137 16 H -0.266 1.266 17 H -0.263 1.263 18 H -0.284 1.284 19 C -0.026 4.026 20 C -0.071 4.071 21 C -0.130 4.130 22 C -0.143 4.143 23 C -0.129 4.129 24 C -0.136 4.136 25 C -0.116 4.116 26 C -0.096 4.096 27 C -0.146 4.146 28 C -0.152 4.152 29 H 0.084 0.916 30 H 0.042 0.958 31 H 0.046 0.954 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.401 0.599 35 H 0.269 0.731 36 H 0.117 0.883 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.053 0.947 45 H 0.052 0.948 46 H 0.054 0.946 47 H 0.055 0.945 48 H 0.055 0.945 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.376 -5.746 10.521 13.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.297 6.297 3 C 0.017 3.983 4 H 0.092 0.908 5 C -0.017 4.017 6 N -0.379 5.379 7 C 0.324 3.676 8 O -0.440 6.440 9 C 0.000 4.000 10 H 0.085 0.915 11 C -0.550 4.550 12 H 0.100 0.900 13 C -0.118 4.118 14 N -0.516 5.516 15 Si 0.690 3.310 16 H -0.191 1.191 17 H -0.188 1.188 18 H -0.210 1.210 19 C -0.027 4.027 20 C -0.089 4.089 21 C -0.148 4.148 22 C -0.161 4.161 23 C -0.147 4.147 24 C -0.154 4.154 25 C -0.154 4.154 26 C -0.114 4.114 27 C -0.203 4.203 28 C -0.210 4.210 29 H 0.102 0.898 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.236 0.764 35 H 0.079 0.921 36 H 0.135 0.865 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.125 0.875 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.073 0.927 47 H 0.075 0.925 48 H 0.074 0.926 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.124 -5.766 10.284 13.286 hybrid contribution -1.302 -0.519 -0.277 1.428 sum 4.823 -6.285 10.007 12.764 Atomic orbital electron populations 1.22906 0.81127 1.02663 1.00311 1.87917 1.19492 1.27295 1.94982 1.22512 0.96219 0.85527 0.94045 0.90830 1.21661 0.91833 1.01781 0.86420 1.45835 1.09763 1.76255 1.06032 1.21113 0.90007 0.73182 0.83322 1.90593 1.20113 1.50651 1.82604 1.18497 0.93325 1.00492 0.87636 0.91465 1.20531 0.92136 0.98331 1.43982 0.90014 1.24968 0.96892 0.96228 0.93745 1.69878 1.07171 1.27840 1.46758 0.87015 0.78604 0.84780 0.80619 1.19082 1.18837 1.21016 1.20045 0.93658 0.92791 0.96209 1.20835 0.95267 0.97299 0.95541 1.21030 1.00779 0.98457 0.94515 1.20858 1.01552 0.94680 0.99057 1.20873 0.99462 0.97787 0.96593 1.20961 1.01369 0.98471 0.94589 1.21808 0.97648 1.02885 0.93088 1.21070 0.96789 0.99306 0.94282 1.21825 0.98629 1.01741 0.98109 1.21946 0.99499 0.98104 1.01416 0.89782 0.93937 0.93571 0.91136 0.91374 0.76404 0.92126 0.86527 0.87142 0.87347 0.87291 0.87486 0.90779 0.90504 0.90642 0.92754 0.92891 0.92700 0.92545 0.92589 0.92821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.66 101.05 1.08 1.38 16 2 O -0.38 -5.05 9.75 -35.23 -0.34 -5.39 16 3 C 0.08 0.94 2.13 -26.73 -0.06 0.88 16 4 H 0.07 0.89 5.78 -51.93 -0.30 0.59 16 5 C 0.11 1.68 5.34 -4.05 -0.02 1.65 16 6 N -0.73 -13.47 5.40 -60.30 -0.33 -13.79 16 7 C 0.53 11.82 7.04 -10.98 -0.08 11.74 16 8 O -0.56 -13.54 15.42 5.55 0.09 -13.46 16 9 C 0.02 0.51 1.98 -94.08 -0.19 0.32 16 10 H 0.07 1.52 4.81 -51.93 -0.25 1.27 16 11 C -0.51 -13.10 7.99 -34.44 -0.28 -13.37 16 12 H 0.08 2.30 8.06 -52.48 -0.42 1.87 16 13 C 0.09 2.27 5.47 -17.82 -0.10 2.17 16 14 N -0.88 -24.68 13.96 55.43 0.77 -23.91 16 15 Si 0.86 19.67 27.30 -169.99 -4.64 15.03 16 16 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 17 H -0.26 -5.60 6.42 56.52 0.36 -5.23 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 C -0.03 -0.59 4.30 -104.62 -0.45 -1.04 16 20 C -0.07 -1.59 8.32 -39.59 -0.33 -1.92 16 21 C -0.13 -2.51 10.05 -39.58 -0.40 -2.91 16 22 C -0.14 -2.58 10.05 -39.58 -0.40 -2.97 16 23 C -0.13 -2.39 10.05 -39.58 -0.40 -2.79 16 24 C -0.14 -2.83 9.67 -39.59 -0.38 -3.22 16 25 C -0.12 -1.20 4.39 -26.73 -0.12 -1.32 16 26 C -0.10 -0.89 2.87 -90.62 -0.26 -1.15 16 27 C -0.15 -1.17 9.19 37.16 0.34 -0.83 16 28 C -0.15 -1.36 8.95 37.16 0.33 -1.02 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.04 0.42 8.06 -51.93 -0.42 0.00 16 31 H 0.05 0.58 6.59 -51.93 -0.34 0.23 16 32 H 0.07 1.17 8.13 -51.93 -0.42 0.74 16 33 H 0.07 1.06 8.14 -51.92 -0.42 0.63 16 34 H 0.40 7.11 6.69 -40.82 -0.27 6.84 16 35 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 36 H 0.12 2.69 7.88 -52.48 -0.41 2.28 16 37 H 0.11 1.83 8.06 -52.48 -0.42 1.41 16 38 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 40 H 0.11 2.07 7.96 -52.49 -0.42 1.65 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.08 0.76 7.69 -51.93 -0.40 0.36 16 44 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 48 H 0.06 0.53 6.46 -51.93 -0.34 0.19 16 49 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 394.81 15.07 5.95 5.95 Total: -1.00 -30.15 394.81 -8.44 -38.59 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -8.24 Total: 11.37 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: -1.70 Total: -14.39 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.45 Total: -37.70 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.26 Total: -18.85 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -4.64 Total: 15.03 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.15 -8.44 -38.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361410394.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.395 kcal (2) G-P(sol) polarization free energy of solvation -30.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds