Wall clock time and date at job start Tue Mar 31 2020 12:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 113.99982 * 2 1 4 4 H 1.09000 * 109.46848 * 10.11117 * 3 2 1 5 5 C 1.52994 * 109.46876 * 250.11467 * 3 2 1 6 6 N 1.46495 * 109.47362 * 65.33633 * 5 3 2 7 7 C 1.34781 * 120.00071 * 185.39334 * 6 5 3 8 8 O 1.21285 * 120.00035 * 359.97438 * 7 6 5 9 9 C 1.50698 * 119.99965 * 180.02562 * 7 6 5 10 10 H 1.09004 * 109.46958 * 299.99648 * 9 7 6 11 11 C 1.50696 * 109.47504 * 59.99466 * 9 7 6 12 12 H 1.08005 * 119.99557 * 33.29734 * 11 9 7 13 13 C 1.37877 * 120.00478 * 213.29368 * 11 9 7 14 14 N 1.31513 * 120.00221 * 188.06805 * 13 11 9 15 15 Si 1.86796 * 119.99683 * 8.07881 * 13 11 9 16 16 H 1.48502 * 109.47100 * 275.61361 * 15 13 11 17 17 H 1.48501 * 109.47385 * 35.61213 * 15 13 11 18 18 H 1.48502 * 109.47092 * 155.61761 * 15 13 11 19 19 C 1.50705 * 109.47250 * 180.02562 * 9 7 6 20 20 C 1.38235 * 119.99494 * 293.61634 * 19 9 7 21 21 C 1.38231 * 119.99933 * 179.78770 * 20 19 9 22 22 C 1.38241 * 119.99970 * 0.44032 * 21 20 19 23 23 C 1.38238 * 119.99623 * 359.81546 * 22 21 20 24 24 C 1.38230 * 120.00272 * 113.89085 * 19 9 7 25 25 C 1.52999 * 109.46941 * 130.11258 * 3 2 1 26 26 C 1.52997 * 109.47255 * 294.99588 * 25 3 2 27 27 C 1.52999 * 109.47064 * 175.00164 * 26 25 3 28 28 C 1.52998 * 109.47374 * 295.00110 * 26 25 3 29 29 H 1.08997 * 109.47016 * 185.28619 * 1 2 3 30 30 H 1.09003 * 109.47246 * 305.28403 * 1 2 3 31 31 H 1.09001 * 109.46965 * 65.28440 * 1 2 3 32 32 H 1.09002 * 109.46946 * 305.33233 * 5 3 2 33 33 H 1.09008 * 109.47057 * 185.33852 * 5 3 2 34 34 H 0.97000 * 119.99972 * 5.39116 * 6 5 3 35 35 H 0.97001 * 120.00294 * 180.02562 * 14 13 11 36 36 H 1.08006 * 120.00163 * 359.97438 * 20 19 9 37 37 H 1.08005 * 120.00423 * 180.27553 * 21 20 19 38 38 H 1.08000 * 120.00106 * 179.83579 * 22 21 20 39 39 H 1.08005 * 119.99580 * 179.97438 * 23 22 21 40 40 H 1.07998 * 120.00138 * 359.97438 * 24 19 9 41 41 H 1.08998 * 109.47073 * 54.99957 * 25 3 2 42 42 H 1.09001 * 109.46636 * 174.99562 * 25 3 2 43 43 H 1.09002 * 109.46747 * 55.00792 * 26 25 3 44 44 H 1.09001 * 109.47357 * 59.99894 * 27 26 25 45 45 H 1.09003 * 109.47280 * 180.02562 * 27 26 25 46 46 H 1.09005 * 109.47171 * 300.00103 * 27 26 25 47 47 H 1.08994 * 109.47451 * 300.00132 * 28 26 25 48 48 H 1.09003 * 109.46870 * 60.00283 * 28 26 25 49 49 H 1.08999 * 109.46981 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.2338 2.0489 0.1804 5 6 2.6659 1.5718 -1.3565 6 7 1.6356 1.6138 -2.3970 7 6 1.9902 1.7279 -3.6923 8 8 3.1623 1.7962 -3.9964 9 6 0.9303 1.7718 -4.7627 10 1 0.3431 0.8540 -4.7303 11 6 0.0269 2.9547 -4.5269 12 1 0.4269 3.8633 -4.1014 13 6 -1.3102 2.8772 -4.8545 14 7 -2.0642 3.9533 -4.7991 15 14 -2.0506 1.2437 -5.3767 16 1 -1.8158 1.0353 -6.8282 17 1 -1.4136 0.1435 -4.6093 18 1 -3.5111 1.2538 -5.1080 19 6 1.5856 1.9008 -6.1136 20 6 2.2773 3.0526 -6.4390 21 6 2.8821 3.1692 -7.6765 22 6 2.7876 2.1377 -8.5921 23 6 2.0914 0.9881 -8.2685 24 6 1.4902 0.8698 -7.0294 25 6 3.0667 1.3933 1.1032 26 6 2.3913 1.2511 2.4686 27 6 3.4587 1.2138 3.5642 28 6 1.4605 2.4423 2.7039 29 1 -0.3633 -1.0233 0.0947 30 1 -0.3634 0.5936 0.8389 31 1 -0.3633 0.4297 -0.9335 32 1 3.3755 0.7750 -1.5797 33 1 3.1902 2.5270 -1.3254 34 1 0.6981 1.5596 -2.1538 35 1 -3.0050 3.8987 -5.0292 36 1 2.3477 3.8601 -5.7253 37 1 3.4263 4.0673 -7.9292 38 1 3.2579 2.2299 -9.5599 39 1 2.0172 0.1824 -8.9840 40 1 0.9465 -0.0284 -6.7766 41 1 3.7953 0.5932 0.9731 42 1 3.5719 2.3575 1.0464 43 1 1.8130 0.3275 2.4934 44 1 4.0372 2.1373 3.5394 45 1 2.9776 1.1120 4.5369 46 1 4.1219 0.3651 3.3966 47 1 2.0389 3.3658 2.6791 48 1 0.7000 2.4688 1.9234 49 1 0.9790 2.3407 3.6764 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361410394.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:19 Heat of formation + Delta-G solvation = -100.379227 kcal Electronic energy + Delta-G solvation = -27496.354104 eV Core-core repulsion = 23807.770135 eV Total energy + Delta-G solvation = -3688.583969 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.08788 -39.98119 -39.17909 -36.66704 -35.56023 -35.40949 -33.36497 -31.74573 -31.63232 -29.53513 -28.06673 -27.27136 -27.01626 -25.28301 -23.38217 -22.88938 -22.41434 -21.09042 -20.63481 -19.12832 -18.11816 -17.88678 -17.68031 -17.02684 -16.46584 -16.36919 -15.90415 -15.83294 -15.48092 -15.37924 -15.14128 -14.77840 -14.68590 -14.28082 -14.21881 -14.08286 -13.97898 -13.64181 -13.48007 -13.32494 -13.06907 -12.95856 -12.78570 -12.69345 -12.45280 -12.17218 -12.03143 -12.00551 -11.71476 -11.62738 -11.46225 -11.43156 -11.38335 -10.90767 -10.73008 -10.42840 -9.95880 -9.65002 -9.37978 -8.36285 -6.43926 0.63746 0.70322 1.32283 1.37146 1.42188 1.85022 2.29003 2.40299 2.77978 2.93672 3.15478 3.64738 3.89833 4.00930 4.07884 4.13212 4.17503 4.20347 4.30365 4.35195 4.38595 4.42490 4.51523 4.53920 4.55942 4.59263 4.77008 4.81122 4.81683 4.83344 4.84579 4.89232 4.90755 5.04270 5.11738 5.12255 5.18617 5.31338 5.33471 5.39571 5.45979 5.53743 5.60155 5.69149 5.73295 5.94042 6.18957 6.21879 6.29825 6.57735 6.63670 7.21068 7.41643 8.78280 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014006 B = 0.003731 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.623426 B = 7502.180973 C = 8551.059768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.390 6.390 3 C 0.083 3.917 4 H 0.078 0.922 5 C 0.105 3.895 6 N -0.717 5.717 7 C 0.530 3.470 8 O -0.586 6.586 9 C 0.025 3.975 10 H 0.074 0.926 11 C -0.503 4.503 12 H 0.039 0.961 13 C 0.041 3.959 14 N -0.927 5.927 15 Si 0.918 3.082 16 H -0.266 1.266 17 H -0.238 1.238 18 H -0.280 1.280 19 C -0.057 4.057 20 C -0.103 4.103 21 C -0.134 4.134 22 C -0.137 4.137 23 C -0.125 4.125 24 C -0.153 4.153 25 C -0.113 4.113 26 C -0.092 4.092 27 C -0.143 4.143 28 C -0.153 4.153 29 H 0.100 0.900 30 H 0.058 0.942 31 H 0.032 0.968 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.405 0.595 35 H 0.271 0.729 36 H 0.089 0.911 37 H 0.135 0.865 38 H 0.151 0.849 39 H 0.149 0.851 40 H 0.120 0.880 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.069 0.931 44 H 0.057 0.943 45 H 0.061 0.939 46 H 0.055 0.945 47 H 0.058 0.942 48 H 0.047 0.953 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.708 -7.720 10.011 13.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.309 6.309 3 C 0.025 3.975 4 H 0.096 0.904 5 C -0.018 4.018 6 N -0.369 5.369 7 C 0.318 3.682 8 O -0.467 6.467 9 C 0.004 3.996 10 H 0.091 0.909 11 C -0.541 4.541 12 H 0.057 0.943 13 C -0.160 4.160 14 N -0.565 5.565 15 Si 0.742 3.258 16 H -0.191 1.191 17 H -0.162 1.162 18 H -0.205 1.205 19 C -0.058 4.058 20 C -0.121 4.121 21 C -0.152 4.152 22 C -0.154 4.154 23 C -0.143 4.143 24 C -0.171 4.171 25 C -0.151 4.151 26 C -0.110 4.110 27 C -0.201 4.201 28 C -0.210 4.210 29 H 0.118 0.882 30 H 0.077 0.923 31 H 0.051 0.949 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.240 0.760 35 H 0.080 0.920 36 H 0.107 0.893 37 H 0.153 0.847 38 H 0.169 0.831 39 H 0.166 0.834 40 H 0.138 0.862 41 H 0.091 0.909 42 H 0.103 0.897 43 H 0.087 0.913 44 H 0.076 0.924 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.077 0.923 48 H 0.066 0.934 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.460 -7.754 9.812 14.076 hybrid contribution -1.317 0.160 -0.145 1.334 sum 5.143 -7.594 9.666 13.325 Atomic orbital electron populations 1.23051 0.80213 1.03981 1.00272 1.87902 1.20577 1.27521 1.94934 1.22474 0.96759 0.85548 0.92695 0.90420 1.21861 0.91300 1.01441 0.87237 1.45835 1.10679 1.74692 1.05659 1.21043 0.89479 0.73335 0.84338 1.90561 1.20848 1.52111 1.83192 1.18427 0.93205 0.99227 0.88780 0.90855 1.20428 0.92690 0.97735 1.43200 0.94275 1.25664 0.97109 0.99470 0.93767 1.70002 1.07593 1.30161 1.48716 0.86127 0.78024 0.81324 0.80356 1.19070 1.16197 1.20544 1.20103 0.95227 0.94039 0.96386 1.20821 0.97500 0.96986 0.96832 1.21363 1.00130 1.00125 0.93549 1.21354 1.00374 0.93536 1.00164 1.21362 0.97789 0.98957 0.96154 1.21243 1.02139 0.98403 0.95349 1.21808 0.96994 1.03280 0.92976 1.21026 0.97052 0.99112 0.93829 1.21802 0.98293 1.02015 0.97956 1.21949 0.99294 0.98049 1.01679 0.88181 0.92302 0.94945 0.92007 0.91477 0.75955 0.92001 0.89300 0.84739 0.83136 0.83371 0.86181 0.90929 0.89738 0.91273 0.92357 0.92022 0.92615 0.92328 0.93418 0.91824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 10.66 113.37 1.21 1.67 16 2 O -0.39 -10.13 9.75 -148.98 -1.45 -11.58 16 3 C 0.08 2.06 2.13 30.59 0.07 2.12 16 4 H 0.08 1.86 5.78 -2.39 -0.01 1.85 16 5 C 0.11 3.34 5.34 86.38 0.46 3.81 16 6 N -0.72 -27.31 5.40 -463.06 -2.50 -29.82 16 7 C 0.53 24.15 7.04 87.66 0.62 24.77 16 8 O -0.59 -29.24 15.42 -3.05 -0.05 -29.28 16 9 C 0.03 1.18 1.98 -13.03 -0.03 1.15 16 10 H 0.07 3.29 4.81 -2.38 -0.01 3.28 16 11 C -0.50 -26.81 7.99 25.60 0.20 -26.61 16 12 H 0.04 2.36 8.06 -2.91 -0.02 2.34 16 13 C 0.04 2.18 5.47 84.65 0.46 2.64 16 14 N -0.93 -53.63 13.96 21.45 0.30 -53.33 16 15 Si 0.92 40.24 27.30 68.60 1.87 42.11 16 16 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 17 H -0.24 -9.38 6.42 99.48 0.64 -8.74 16 18 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 19 C -0.06 -2.61 4.30 -19.87 -0.09 -2.70 16 20 C -0.10 -4.73 8.32 22.27 0.19 -4.55 16 21 C -0.13 -5.03 10.05 22.27 0.22 -4.81 16 22 C -0.14 -4.44 10.05 22.27 0.22 -4.21 16 23 C -0.12 -4.20 10.05 22.27 0.22 -3.97 16 24 C -0.15 -6.15 9.67 22.27 0.22 -5.93 16 25 C -0.11 -2.24 4.39 30.59 0.13 -2.10 16 26 C -0.09 -1.57 2.87 -10.80 -0.03 -1.60 16 27 C -0.14 -2.05 9.19 71.98 0.66 -1.39 16 28 C -0.15 -2.51 8.95 71.98 0.64 -1.87 16 29 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.06 1.09 8.06 -2.39 -0.02 1.07 16 31 H 0.03 0.79 6.59 -2.39 -0.02 0.78 16 32 H 0.06 2.08 8.13 -2.39 -0.02 2.06 16 33 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 34 H 0.40 14.69 6.69 -92.71 -0.62 14.07 16 35 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 36 H 0.09 4.42 7.88 -2.91 -0.02 4.40 16 37 H 0.13 4.25 8.06 -2.91 -0.02 4.23 16 38 H 0.15 3.63 8.06 -2.91 -0.02 3.60 16 39 H 0.15 3.78 8.06 -2.91 -0.02 3.76 16 40 H 0.12 4.37 7.96 -2.91 -0.02 4.35 16 41 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.07 1.29 7.69 -2.39 -0.02 1.27 16 44 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 47 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.05 0.85 6.46 -2.39 -0.02 0.84 16 49 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -67.39 394.81 3.79 -63.60 By element: Atomic # 1 Polarization: 41.65 SS G_CDS: 0.23 Total: 41.88 kcal Atomic # 6 Polarization: -28.96 SS G_CDS: 5.39 Total: -23.57 kcal Atomic # 7 Polarization: -80.95 SS G_CDS: -2.20 Total: -83.15 kcal Atomic # 8 Polarization: -39.37 SS G_CDS: -1.50 Total: -40.87 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 1.87 Total: 42.11 kcal Total: -67.39 3.79 -63.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361410394.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.783 kcal (2) G-P(sol) polarization free energy of solvation -67.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds