Wall clock time and date at job start Tue Mar 31 2020 12:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42910 * 113.99740 * 2 1 4 4 H 1.08998 * 109.46802 * 8.40210 * 3 2 1 5 5 C 1.53002 * 109.46702 * 248.40347 * 3 2 1 6 6 N 1.46498 * 109.47466 * 62.71292 * 5 3 2 7 7 C 1.34775 * 120.00200 * 173.77153 * 6 5 3 8 8 O 1.21279 * 119.99676 * 359.97438 * 7 6 5 9 9 C 1.50694 * 119.99925 * 179.97438 * 7 6 5 10 10 H 1.09001 * 109.47104 * 60.00308 * 9 7 6 11 11 C 1.50695 * 109.47787 * 299.99911 * 9 7 6 12 12 H 1.08006 * 119.99857 * 334.75525 * 11 9 7 13 13 C 1.37872 * 120.00352 * 154.74541 * 11 9 7 14 14 N 1.31516 * 120.00044 * 186.21780 * 13 11 9 15 15 Si 1.86799 * 120.00129 * 6.22665 * 13 11 9 16 16 H 1.48504 * 109.47136 * 84.82640 * 15 13 11 17 17 H 1.48491 * 109.47462 * 204.82615 * 15 13 11 18 18 H 1.48501 * 109.47081 * 324.82823 * 15 13 11 19 19 C 1.50706 * 109.47289 * 179.97438 * 9 7 6 20 20 C 1.38229 * 119.99619 * 65.98883 * 19 9 7 21 21 C 1.38240 * 119.99827 * 179.81338 * 20 19 9 22 22 C 1.38230 * 119.99959 * 0.39710 * 21 20 19 23 23 C 1.38233 * 119.99812 * 359.86016 * 22 21 20 24 24 C 1.38231 * 120.00391 * 359.94990 * 23 22 21 25 25 C 1.52994 * 109.46970 * 128.40229 * 3 2 1 26 26 C 1.52992 * 109.47331 * 294.99665 * 25 3 2 27 27 C 1.53000 * 109.47365 * 175.00166 * 26 25 3 28 28 C 1.53005 * 109.47357 * 295.00613 * 26 25 3 29 29 H 1.09001 * 109.47011 * 183.91790 * 1 2 3 30 30 H 1.09001 * 109.47023 * 63.92561 * 1 2 3 31 31 H 1.08991 * 109.47914 * 303.92076 * 1 2 3 32 32 H 1.09007 * 109.46671 * 182.70767 * 5 3 2 33 33 H 1.08998 * 109.47040 * 302.70510 * 5 3 2 34 34 H 0.97000 * 119.99917 * 353.76237 * 6 5 3 35 35 H 0.97000 * 119.99800 * 180.02562 * 14 13 11 36 36 H 1.08001 * 120.00438 * 359.97438 * 20 19 9 37 37 H 1.07999 * 119.99998 * 180.22934 * 21 20 19 38 38 H 1.08004 * 120.00086 * 179.83533 * 22 21 20 39 39 H 1.08008 * 120.00016 * 179.97438 * 23 22 21 40 40 H 1.08000 * 120.00142 * 179.97438 * 24 23 22 41 41 H 1.09000 * 109.47334 * 55.00307 * 25 3 2 42 42 H 1.09011 * 109.46818 * 174.99820 * 25 3 2 43 43 H 1.08999 * 109.47014 * 55.00188 * 26 25 3 44 44 H 1.08999 * 109.47036 * 60.00036 * 27 26 25 45 45 H 1.08996 * 109.47376 * 180.02562 * 27 26 25 46 46 H 1.09001 * 109.47079 * 300.00401 * 27 26 25 47 47 H 1.09005 * 109.46827 * 179.97438 * 28 26 25 48 48 H 1.08999 * 109.46711 * 299.99760 * 28 26 25 49 49 H 1.08996 * 109.47120 * 59.99858 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.2291 2.0509 0.1502 5 6 2.7026 1.5555 -1.3413 6 7 1.7091 1.5224 -2.4175 7 6 2.0686 1.8420 -3.6765 8 8 3.2144 2.1573 -3.9184 9 6 1.0467 1.8074 -4.7835 10 1 0.2400 2.5039 -4.5552 11 6 0.4871 0.4137 -4.9074 12 1 1.0706 -0.4337 -4.5789 13 6 -0.7698 0.2203 -5.4399 14 7 -1.3081 -0.9797 -5.4362 15 14 -1.7083 1.6626 -6.1669 16 1 -1.2927 1.8627 -7.5785 17 1 -3.1655 1.3817 -6.1151 18 1 -1.4127 2.8901 -5.3851 19 6 1.6997 2.2043 -6.0825 20 6 2.6715 1.3964 -6.6426 21 6 3.2677 1.7585 -7.8361 22 6 2.8980 2.9325 -8.4652 23 6 1.9300 3.7430 -7.9022 24 6 1.3310 3.3790 -6.7108 25 6 3.0361 1.4070 1.1304 26 6 2.3238 1.2812 2.4785 27 6 3.3609 1.2575 3.6031 28 6 1.3869 2.4750 2.6738 29 1 -0.3633 -1.0253 0.0702 30 1 -0.3633 0.4517 -0.9231 31 1 -0.3634 0.5734 0.8527 32 1 3.1868 2.5319 -1.3238 33 1 3.4509 0.7818 -1.5136 34 1 0.7927 1.2704 -2.2239 35 1 -2.1923 -1.1158 -5.8112 36 1 2.9631 0.4810 -6.1492 37 1 4.0243 1.1255 -8.2757 38 1 3.3657 3.2168 -9.3963 39 1 1.6414 4.6606 -8.3935 40 1 0.5750 4.0125 -6.2708 41 1 3.7680 0.6055 1.0299 42 1 3.5428 2.3707 1.0757 43 1 1.7448 0.3579 2.4987 44 1 3.9399 2.1808 3.5830 45 1 2.8534 1.1674 4.5635 46 1 4.0283 0.4070 3.4640 47 1 0.8791 2.3850 3.6341 48 1 1.9659 3.3983 2.6536 49 1 0.6480 2.4918 1.8726 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361410396.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:27 Heat of formation + Delta-G solvation = -80.717115 kcal Electronic energy + Delta-G solvation = -27515.717046 eV Core-core repulsion = 23827.985691 eV Total energy + Delta-G solvation = -3687.731355 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.53624 -38.75555 -37.69209 -35.81817 -33.93130 -33.62886 -31.50313 -30.61567 -30.11288 -27.88411 -27.40702 -26.24637 -25.72465 -23.47441 -21.87226 -21.68135 -20.92235 -20.08224 -19.19823 -17.11487 -16.79081 -16.56470 -16.09318 -15.70914 -15.29084 -14.62359 -14.53917 -14.51475 -14.31937 -13.93306 -13.89607 -13.57714 -13.27686 -12.94129 -12.71375 -12.58441 -12.54553 -12.43599 -12.29997 -12.00349 -11.94277 -11.78616 -11.52471 -11.21615 -11.12309 -10.94022 -10.91711 -10.71081 -10.49745 -10.46384 -10.25046 -9.91209 -9.54127 -9.46700 -8.90990 -8.69189 -8.39570 -8.10898 -7.78912 -6.28669 -4.32756 2.16906 2.23535 3.17537 3.25224 3.31183 3.58944 3.83736 3.90223 4.24711 4.60600 4.66834 4.77220 4.80058 5.02074 5.05384 5.12606 5.29717 5.41191 5.45773 5.54868 5.56847 5.58083 5.60078 5.62479 5.68028 5.73397 5.79767 5.81410 5.83274 5.93225 5.97119 6.02703 6.04270 6.16261 6.24075 6.27223 6.32093 6.34591 6.50609 6.76670 6.87786 7.11825 7.18756 7.27650 7.29049 7.31210 7.62199 7.82269 8.20626 8.29711 8.72307 9.12235 9.29760 10.81976 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014811 B = 0.003660 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.988834 B = 7647.767754 C = 8745.871498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.375 6.375 3 C 0.076 3.924 4 H 0.070 0.930 5 C 0.108 3.892 6 N -0.726 5.726 7 C 0.537 3.463 8 O -0.561 6.561 9 C 0.021 3.979 10 H 0.068 0.932 11 C -0.512 4.512 12 H 0.083 0.917 13 C 0.087 3.913 14 N -0.883 5.883 15 Si 0.864 3.136 16 H -0.266 1.266 17 H -0.287 1.287 18 H -0.262 1.262 19 C -0.030 4.030 20 C -0.071 4.071 21 C -0.130 4.130 22 C -0.143 4.143 23 C -0.130 4.130 24 C -0.139 4.139 25 C -0.117 4.117 26 C -0.097 4.097 27 C -0.146 4.146 28 C -0.152 4.152 29 H 0.087 0.913 30 H 0.047 0.953 31 H 0.038 0.962 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.402 0.598 35 H 0.268 0.732 36 H 0.118 0.882 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.053 0.947 45 H 0.052 0.948 46 H 0.055 0.945 47 H 0.053 0.947 48 H 0.054 0.946 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.612 6.575 11.934 14.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.293 6.293 3 C 0.018 3.982 4 H 0.088 0.912 5 C -0.017 4.017 6 N -0.379 5.379 7 C 0.326 3.674 8 O -0.440 6.440 9 C -0.001 4.001 10 H 0.086 0.914 11 C -0.549 4.549 12 H 0.101 0.899 13 C -0.118 4.118 14 N -0.518 5.518 15 Si 0.691 3.309 16 H -0.191 1.191 17 H -0.214 1.214 18 H -0.187 1.187 19 C -0.031 4.031 20 C -0.089 4.089 21 C -0.148 4.148 22 C -0.161 4.161 23 C -0.148 4.148 24 C -0.157 4.157 25 C -0.155 4.155 26 C -0.115 4.115 27 C -0.203 4.203 28 C -0.209 4.209 29 H 0.106 0.894 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.238 0.762 35 H 0.078 0.922 36 H 0.136 0.864 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.074 0.926 47 H 0.072 0.928 48 H 0.073 0.927 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.373 6.504 11.715 14.095 hybrid contribution -1.319 0.678 -0.493 1.562 sum 3.054 7.182 11.223 13.670 Atomic orbital electron populations 1.22903 0.80920 1.03092 0.99872 1.87959 1.19640 1.26833 1.94911 1.22478 0.96033 0.85774 0.93947 0.91207 1.21653 0.92419 1.01776 0.85844 1.45852 1.13413 1.70976 1.07641 1.20977 0.89334 0.73873 0.83215 1.90592 1.21199 1.48971 1.83213 1.18550 0.93574 1.00323 0.87642 0.91380 1.20536 1.01314 0.89414 1.43672 0.89907 1.24921 0.96830 0.95581 0.94426 1.69875 1.16536 1.21452 1.43959 0.87061 0.78990 0.83347 0.81488 1.19058 1.21351 1.18748 1.20110 0.93905 0.92073 0.97022 1.20863 0.94824 0.98937 0.94252 1.21044 1.00482 0.96995 0.96269 1.20863 0.99288 0.95948 0.99984 1.20879 0.97960 0.99513 0.96418 1.21001 1.01095 0.96925 0.96663 1.21823 0.97855 1.02816 0.93050 1.21073 0.96790 0.99313 0.94331 1.21821 0.98807 1.01747 0.97921 1.21943 0.99416 0.98094 1.01421 0.89449 0.93407 0.94371 0.91098 0.91495 0.76199 0.92188 0.86386 0.87082 0.87316 0.87286 0.87365 0.90670 0.90668 0.90519 0.92821 0.92896 0.92621 0.92814 0.92659 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.54 101.05 1.07 1.42 16 2 O -0.37 -5.33 9.65 -35.23 -0.34 -5.67 16 3 C 0.08 0.95 2.20 -26.73 -0.06 0.89 16 4 H 0.07 0.80 5.80 -51.93 -0.30 0.50 16 5 C 0.11 1.68 5.36 -4.04 -0.02 1.66 16 6 N -0.73 -13.47 5.38 -60.30 -0.32 -13.80 16 7 C 0.54 11.83 7.04 -10.99 -0.08 11.75 16 8 O -0.56 -13.47 15.40 5.56 0.09 -13.38 16 9 C 0.02 0.47 1.89 -94.08 -0.18 0.30 16 10 H 0.07 1.53 5.51 -51.93 -0.29 1.24 16 11 C -0.51 -13.24 8.05 -34.44 -0.28 -13.51 16 12 H 0.08 2.37 8.05 -52.48 -0.42 1.95 16 13 C 0.09 2.32 5.47 -17.82 -0.10 2.22 16 14 N -0.88 -24.95 13.96 55.43 0.77 -24.18 16 15 Si 0.86 20.22 25.85 -169.99 -4.39 15.83 16 16 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.26 -5.71 6.13 56.52 0.35 -5.36 16 19 C -0.03 -0.69 3.56 -104.62 -0.37 -1.06 16 20 C -0.07 -1.58 8.30 -39.58 -0.33 -1.91 16 21 C -0.13 -2.52 10.05 -39.58 -0.40 -2.92 16 22 C -0.14 -2.57 10.05 -39.59 -0.40 -2.96 16 23 C -0.13 -2.40 10.05 -39.59 -0.40 -2.80 16 24 C -0.14 -2.89 8.49 -39.59 -0.34 -3.22 16 25 C -0.12 -1.21 4.39 -26.74 -0.12 -1.33 16 26 C -0.10 -0.88 2.87 -90.62 -0.26 -1.14 16 27 C -0.15 -1.16 9.19 37.16 0.34 -0.82 16 28 C -0.15 -1.27 8.95 37.16 0.33 -0.94 16 29 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.05 0.64 6.49 -51.93 -0.34 0.30 16 31 H 0.04 0.38 8.09 -51.93 -0.42 -0.04 16 32 H 0.07 1.07 8.12 -51.93 -0.42 0.65 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.40 7.19 6.40 -40.82 -0.26 6.93 16 35 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.12 2.74 7.90 -52.49 -0.41 2.33 16 37 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 38 H 0.11 1.60 8.06 -52.48 -0.42 1.17 16 39 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 40 H 0.11 2.09 7.92 -52.49 -0.42 1.68 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 43 H 0.08 0.78 7.69 -51.93 -0.40 0.38 16 44 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 49 H 0.05 0.48 6.45 -51.93 -0.33 0.14 16 LS Contribution 391.21 15.07 5.90 5.90 Total: -1.00 -30.45 391.21 -8.16 -38.61 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -8.28 Total: 11.07 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: -1.58 Total: -14.38 kcal Atomic # 7 Polarization: -38.42 SS G_CDS: 0.45 Total: -37.97 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.25 Total: -19.05 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -4.39 Total: 15.83 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.45 -8.16 -38.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361410396.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.106 kcal (2) G-P(sol) polarization free energy of solvation -30.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds