Wall clock time and date at job start Tue Mar 31 2020 12:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42910 * 113.99740 * 2 1 4 4 H 1.08998 * 109.46802 * 8.40210 * 3 2 1 5 5 C 1.53002 * 109.46702 * 248.40347 * 3 2 1 6 6 N 1.46498 * 109.47466 * 62.71292 * 5 3 2 7 7 C 1.34775 * 120.00200 * 173.77153 * 6 5 3 8 8 O 1.21279 * 119.99676 * 359.97438 * 7 6 5 9 9 C 1.50694 * 119.99925 * 179.97438 * 7 6 5 10 10 H 1.09001 * 109.47104 * 60.00308 * 9 7 6 11 11 C 1.50695 * 109.47787 * 299.99911 * 9 7 6 12 12 H 1.08006 * 119.99857 * 334.75525 * 11 9 7 13 13 C 1.37872 * 120.00352 * 154.74541 * 11 9 7 14 14 N 1.31516 * 120.00044 * 186.21780 * 13 11 9 15 15 Si 1.86799 * 120.00129 * 6.22665 * 13 11 9 16 16 H 1.48504 * 109.47136 * 84.82640 * 15 13 11 17 17 H 1.48491 * 109.47462 * 204.82615 * 15 13 11 18 18 H 1.48501 * 109.47081 * 324.82823 * 15 13 11 19 19 C 1.50706 * 109.47289 * 179.97438 * 9 7 6 20 20 C 1.38229 * 119.99619 * 65.98883 * 19 9 7 21 21 C 1.38240 * 119.99827 * 179.81338 * 20 19 9 22 22 C 1.38230 * 119.99959 * 0.39710 * 21 20 19 23 23 C 1.38233 * 119.99812 * 359.86016 * 22 21 20 24 24 C 1.38231 * 120.00391 * 359.94990 * 23 22 21 25 25 C 1.52994 * 109.46970 * 128.40229 * 3 2 1 26 26 C 1.52992 * 109.47331 * 294.99665 * 25 3 2 27 27 C 1.53000 * 109.47365 * 175.00166 * 26 25 3 28 28 C 1.53005 * 109.47357 * 295.00613 * 26 25 3 29 29 H 1.09001 * 109.47011 * 183.91790 * 1 2 3 30 30 H 1.09001 * 109.47023 * 63.92561 * 1 2 3 31 31 H 1.08991 * 109.47914 * 303.92076 * 1 2 3 32 32 H 1.09007 * 109.46671 * 182.70767 * 5 3 2 33 33 H 1.08998 * 109.47040 * 302.70510 * 5 3 2 34 34 H 0.97000 * 119.99917 * 353.76237 * 6 5 3 35 35 H 0.97000 * 119.99800 * 180.02562 * 14 13 11 36 36 H 1.08001 * 120.00438 * 359.97438 * 20 19 9 37 37 H 1.07999 * 119.99998 * 180.22934 * 21 20 19 38 38 H 1.08004 * 120.00086 * 179.83533 * 22 21 20 39 39 H 1.08008 * 120.00016 * 179.97438 * 23 22 21 40 40 H 1.08000 * 120.00142 * 179.97438 * 24 23 22 41 41 H 1.09000 * 109.47334 * 55.00307 * 25 3 2 42 42 H 1.09011 * 109.46818 * 174.99820 * 25 3 2 43 43 H 1.08999 * 109.47014 * 55.00188 * 26 25 3 44 44 H 1.08999 * 109.47036 * 60.00036 * 27 26 25 45 45 H 1.08996 * 109.47376 * 180.02562 * 27 26 25 46 46 H 1.09001 * 109.47079 * 300.00401 * 27 26 25 47 47 H 1.09005 * 109.46827 * 179.97438 * 28 26 25 48 48 H 1.08999 * 109.46711 * 299.99760 * 28 26 25 49 49 H 1.08996 * 109.47120 * 59.99858 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.2291 2.0509 0.1502 5 6 2.7026 1.5555 -1.3413 6 7 1.7091 1.5224 -2.4175 7 6 2.0686 1.8420 -3.6765 8 8 3.2144 2.1573 -3.9184 9 6 1.0467 1.8074 -4.7835 10 1 0.2400 2.5039 -4.5552 11 6 0.4871 0.4137 -4.9074 12 1 1.0706 -0.4337 -4.5789 13 6 -0.7698 0.2203 -5.4399 14 7 -1.3081 -0.9797 -5.4362 15 14 -1.7083 1.6626 -6.1669 16 1 -1.2927 1.8627 -7.5785 17 1 -3.1655 1.3817 -6.1151 18 1 -1.4127 2.8901 -5.3851 19 6 1.6997 2.2043 -6.0825 20 6 2.6715 1.3964 -6.6426 21 6 3.2677 1.7585 -7.8361 22 6 2.8980 2.9325 -8.4652 23 6 1.9300 3.7430 -7.9022 24 6 1.3310 3.3790 -6.7108 25 6 3.0361 1.4070 1.1304 26 6 2.3238 1.2812 2.4785 27 6 3.3609 1.2575 3.6031 28 6 1.3869 2.4750 2.6738 29 1 -0.3633 -1.0253 0.0702 30 1 -0.3633 0.4517 -0.9231 31 1 -0.3634 0.5734 0.8527 32 1 3.1868 2.5319 -1.3238 33 1 3.4509 0.7818 -1.5136 34 1 0.7927 1.2704 -2.2239 35 1 -2.1923 -1.1158 -5.8112 36 1 2.9631 0.4810 -6.1492 37 1 4.0243 1.1255 -8.2757 38 1 3.3657 3.2168 -9.3963 39 1 1.6414 4.6606 -8.3935 40 1 0.5750 4.0125 -6.2708 41 1 3.7680 0.6055 1.0299 42 1 3.5428 2.3707 1.0757 43 1 1.7448 0.3579 2.4987 44 1 3.9399 2.1808 3.5830 45 1 2.8534 1.1674 4.5635 46 1 4.0283 0.4070 3.4640 47 1 0.8791 2.3850 3.6341 48 1 1.9659 3.3983 2.6536 49 1 0.6480 2.4918 1.8726 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361410396.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:26 Heat of formation + Delta-G solvation = -98.895037 kcal Electronic energy + Delta-G solvation = -27516.505300 eV Core-core repulsion = 23827.985691 eV Total energy + Delta-G solvation = -3688.519609 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.10483 -39.99516 -39.19151 -36.65530 -35.55417 -35.40873 -33.36737 -31.75225 -31.64599 -29.50868 -28.05904 -27.25939 -27.02159 -25.28203 -23.40212 -22.88882 -22.39988 -21.09950 -20.63100 -19.09051 -18.13949 -17.87796 -17.67870 -17.02887 -16.50375 -16.28110 -15.93704 -15.87392 -15.47716 -15.38021 -15.12142 -14.76409 -14.67138 -14.32416 -14.15667 -14.10252 -13.91126 -13.67541 -13.46425 -13.32182 -13.06744 -12.98282 -12.71459 -12.70362 -12.45081 -12.16410 -12.08069 -11.99466 -11.69906 -11.62534 -11.46179 -11.44876 -11.36408 -10.88754 -10.71076 -10.39616 -9.98209 -9.65743 -9.38647 -8.35354 -6.43290 0.62080 0.68437 1.31109 1.39725 1.43036 1.82799 2.29454 2.41353 2.80802 2.96028 3.13161 3.66042 3.90432 4.01210 4.08329 4.12809 4.18870 4.19445 4.29455 4.33488 4.37963 4.41806 4.51408 4.55309 4.57292 4.62528 4.77583 4.79748 4.82260 4.83984 4.87199 4.90016 4.92114 5.05557 5.12422 5.13142 5.18461 5.30357 5.34471 5.38449 5.47307 5.54459 5.60373 5.67826 5.72442 5.93879 6.19026 6.25987 6.28536 6.58902 6.64100 7.21807 7.40908 8.78872 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014811 B = 0.003660 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.988834 B = 7647.767754 C = 8745.871498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.396 6.396 3 C 0.083 3.917 4 H 0.086 0.914 5 C 0.105 3.895 6 N -0.718 5.718 7 C 0.532 3.468 8 O -0.585 6.585 9 C 0.023 3.977 10 H 0.077 0.923 11 C -0.502 4.502 12 H 0.037 0.963 13 C 0.041 3.959 14 N -0.928 5.928 15 Si 0.919 3.081 16 H -0.270 1.270 17 H -0.284 1.284 18 H -0.234 1.234 19 C -0.058 4.058 20 C -0.103 4.103 21 C -0.134 4.134 22 C -0.136 4.136 23 C -0.126 4.126 24 C -0.154 4.154 25 C -0.113 4.113 26 C -0.094 4.094 27 C -0.144 4.144 28 C -0.151 4.151 29 H 0.088 0.912 30 H 0.033 0.967 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.047 0.953 34 H 0.405 0.595 35 H 0.270 0.730 36 H 0.088 0.912 37 H 0.135 0.865 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.122 0.878 41 H 0.066 0.934 42 H 0.089 0.911 43 H 0.065 0.935 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.051 0.949 47 H 0.062 0.938 48 H 0.061 0.939 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.419 9.585 11.724 15.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.315 6.315 3 C 0.025 3.975 4 H 0.104 0.896 5 C -0.019 4.019 6 N -0.369 5.369 7 C 0.320 3.680 8 O -0.466 6.466 9 C 0.002 3.998 10 H 0.095 0.905 11 C -0.540 4.540 12 H 0.055 0.945 13 C -0.160 4.160 14 N -0.566 5.566 15 Si 0.743 3.257 16 H -0.195 1.195 17 H -0.210 1.210 18 H -0.157 1.157 19 C -0.059 4.059 20 C -0.122 4.122 21 C -0.152 4.152 22 C -0.154 4.154 23 C -0.143 4.143 24 C -0.172 4.172 25 C -0.151 4.151 26 C -0.112 4.112 27 C -0.201 4.201 28 C -0.208 4.208 29 H 0.107 0.893 30 H 0.051 0.949 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.066 0.934 34 H 0.241 0.759 35 H 0.079 0.921 36 H 0.106 0.894 37 H 0.152 0.848 38 H 0.169 0.831 39 H 0.167 0.833 40 H 0.140 0.860 41 H 0.084 0.916 42 H 0.108 0.892 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.070 0.930 47 H 0.081 0.919 48 H 0.080 0.920 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.181 9.519 11.546 15.537 hybrid contribution -1.143 -0.318 -0.441 1.266 sum 3.038 9.201 11.104 14.737 Atomic orbital electron populations 1.22992 0.80146 1.03646 1.00291 1.87939 1.20666 1.27955 1.94923 1.22520 0.96742 0.85563 0.92696 0.89623 1.21868 0.91817 1.01643 0.86542 1.45861 1.14145 1.69471 1.07431 1.20918 0.88859 0.74088 0.84114 1.90561 1.21861 1.50421 1.83752 1.18475 0.94061 0.98384 0.88883 0.90517 1.20429 1.00841 0.89783 1.42902 0.94511 1.25611 0.97677 0.97983 0.94718 1.69999 1.17197 1.23732 1.45671 0.86166 0.77581 0.81376 0.80554 1.19532 1.20977 1.15714 1.20109 0.95071 0.93712 0.96988 1.20838 0.96562 0.98629 0.96140 1.21368 1.00510 0.98153 0.95161 1.21360 0.98473 0.94580 1.00948 1.21381 0.96917 1.00701 0.95328 1.21268 1.01846 0.96373 0.97718 1.21824 0.97162 1.03272 0.92880 1.21035 0.97064 0.99257 0.93855 1.21800 0.98522 1.01995 0.97766 1.21937 0.99210 0.97856 1.01767 0.89335 0.94851 0.91599 0.90130 0.93423 0.75862 0.92075 0.89377 0.84761 0.83107 0.83277 0.85958 0.91550 0.89237 0.91701 0.92091 0.92028 0.92985 0.91913 0.91958 0.93119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.54 113.37 1.20 1.83 16 2 O -0.40 -11.40 9.65 -148.98 -1.44 -12.84 16 3 C 0.08 2.04 2.20 30.59 0.07 2.11 16 4 H 0.09 1.85 5.80 -2.39 -0.01 1.84 16 5 C 0.11 3.34 5.36 86.38 0.46 3.80 16 6 N -0.72 -27.43 5.38 -463.07 -2.49 -29.92 16 7 C 0.53 24.15 7.04 87.66 0.62 24.77 16 8 O -0.59 -28.94 15.40 -3.03 -0.05 -28.98 16 9 C 0.02 1.10 1.89 -13.03 -0.02 1.07 16 10 H 0.08 3.39 5.51 -2.39 -0.01 3.38 16 11 C -0.50 -27.14 8.05 25.60 0.21 -26.93 16 12 H 0.04 2.27 8.05 -2.91 -0.02 2.25 16 13 C 0.04 2.22 5.47 84.65 0.46 2.68 16 14 N -0.93 -54.39 13.96 21.45 0.30 -54.09 16 15 Si 0.92 41.35 25.85 68.60 1.77 43.12 16 16 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 17 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 18 H -0.23 -9.33 6.13 99.48 0.61 -8.72 16 19 C -0.06 -2.64 3.56 -19.87 -0.07 -2.71 16 20 C -0.10 -4.73 8.30 22.27 0.18 -4.55 16 21 C -0.13 -5.02 10.05 22.27 0.22 -4.80 16 22 C -0.14 -4.37 10.05 22.27 0.22 -4.15 16 23 C -0.13 -4.15 10.05 22.27 0.22 -3.93 16 24 C -0.15 -6.06 8.49 22.27 0.19 -5.87 16 25 C -0.11 -2.24 4.39 30.59 0.13 -2.11 16 26 C -0.09 -1.58 2.87 -10.79 -0.03 -1.61 16 27 C -0.14 -2.05 9.19 71.98 0.66 -1.39 16 28 C -0.15 -2.20 8.95 71.98 0.64 -1.55 16 29 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.03 0.91 6.49 -2.39 -0.02 0.89 16 31 H 0.07 1.25 8.09 -2.39 -0.02 1.23 16 32 H 0.08 2.41 8.12 -2.38 -0.02 2.40 16 33 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.41 14.94 6.40 -92.71 -0.59 14.35 16 35 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 36 H 0.09 4.41 7.90 -2.91 -0.02 4.39 16 37 H 0.13 4.24 8.06 -2.91 -0.02 4.22 16 38 H 0.15 3.59 8.06 -2.91 -0.02 3.56 16 39 H 0.15 3.72 8.06 -2.91 -0.02 3.69 16 40 H 0.12 4.35 7.92 -2.91 -0.02 4.33 16 41 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 43 H 0.06 1.26 7.69 -2.39 -0.02 1.24 16 44 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 48 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 49 H 0.05 0.78 6.45 -2.39 -0.02 0.76 16 Total: -1.00 -68.70 391.21 3.70 -65.01 By element: Atomic # 1 Polarization: 40.81 SS G_CDS: 0.23 Total: 41.04 kcal Atomic # 6 Polarization: -28.71 SS G_CDS: 5.37 Total: -23.34 kcal Atomic # 7 Polarization: -81.82 SS G_CDS: -2.19 Total: -84.01 kcal Atomic # 8 Polarization: -40.34 SS G_CDS: -1.48 Total: -41.82 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 1.77 Total: 43.12 kcal Total: -68.70 3.70 -65.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361410396.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.888 kcal (2) G-P(sol) polarization free energy of solvation -68.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds