Wall clock time and date at job start Tue Mar 31 2020 13:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42903 * 113.99218 * 2 1 4 4 C 1.53000 * 109.46395 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47004 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47287 * 59.99928 * 5 4 3 7 7 C 1.52999 * 109.46776 * 299.99843 * 5 4 3 8 8 C 1.53000 * 109.47004 * 179.97438 * 5 4 3 9 9 N 1.46503 * 109.46980 * 179.97438 * 8 5 4 10 10 C 1.34779 * 120.00328 * 180.02562 * 9 8 5 11 11 O 1.21283 * 119.99419 * 359.97438 * 10 9 8 12 12 C 1.50695 * 120.00080 * 180.02562 * 10 9 8 13 13 H 1.09001 * 109.47295 * 299.99387 * 12 10 9 14 14 C 1.50696 * 109.47530 * 59.99483 * 12 10 9 15 15 H 1.07997 * 120.00260 * 235.33651 * 14 12 10 16 16 C 1.37879 * 119.99977 * 55.33425 * 14 12 10 17 17 N 1.31516 * 119.99735 * 1.97120 * 16 14 12 18 18 Si 1.86800 * 120.00111 * 181.96775 * 16 14 12 19 19 H 1.48495 * 109.47133 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46977 * 120.00228 * 18 16 14 21 21 H 1.48496 * 109.47065 * 239.99944 * 18 16 14 22 22 C 1.50707 * 109.46942 * 179.97438 * 12 10 9 23 23 C 1.38224 * 120.00104 * 47.22099 * 22 12 10 24 24 C 1.38237 * 120.00255 * 180.02562 * 23 22 12 25 25 C 1.38238 * 119.99745 * 359.95072 * 24 23 22 26 26 C 1.38236 * 119.99912 * 0.02562 * 25 24 23 27 27 C 1.38232 * 119.99717 * 227.19961 * 22 12 10 28 28 H 1.08998 * 109.47304 * 60.00076 * 1 2 3 29 29 H 1.09010 * 109.46524 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47133 * 299.99001 * 1 2 3 31 31 H 1.09000 * 109.47110 * 60.00736 * 3 2 1 32 32 H 1.08991 * 109.47279 * 299.99780 * 3 2 1 33 33 H 1.09003 * 109.47777 * 60.00136 * 4 3 2 34 34 H 1.09001 * 109.47533 * 299.99769 * 4 3 2 35 35 H 1.08994 * 109.46988 * 180.02562 * 6 5 4 36 36 H 1.08997 * 109.46827 * 299.99908 * 6 5 4 37 37 H 1.09000 * 109.46791 * 60.00202 * 6 5 4 38 38 H 1.09000 * 109.47565 * 299.99962 * 7 5 4 39 39 H 1.08997 * 109.47448 * 60.00024 * 7 5 4 40 40 H 1.09003 * 109.46965 * 179.97438 * 7 5 4 41 41 H 1.09000 * 109.47119 * 60.00172 * 8 5 4 42 42 H 1.09001 * 109.47533 * 299.99479 * 8 5 4 43 43 H 0.97004 * 120.00070 * 359.97438 * 9 8 5 44 44 H 0.97003 * 120.00319 * 179.97438 * 17 16 14 45 45 H 1.08000 * 120.00315 * 359.97438 * 23 22 12 46 46 H 1.07994 * 120.00683 * 179.97438 * 24 23 22 47 47 H 1.08001 * 120.00281 * 179.72897 * 25 24 23 48 48 H 1.07996 * 120.00326 * 179.97438 * 26 25 24 49 49 H 1.08001 * 120.00068 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5353 1.1848 -0.0006 5 6 4.1576 2.5825 0.0000 6 6 3.7066 3.3410 1.2499 7 6 3.7056 3.3425 -1.2486 8 6 5.6828 2.4617 0.0000 9 7 6.2787 3.8001 0.0000 10 6 7.6190 3.9411 -0.0005 11 8 8.3319 2.9599 -0.0005 12 6 8.2319 5.3178 0.0001 13 1 7.9099 5.8593 -0.8895 14 6 7.7877 6.0650 1.2311 15 1 7.3046 7.0261 1.1345 16 6 7.9979 5.5216 2.4807 17 7 8.6207 4.3694 2.6004 18 14 7.3982 6.4218 4.0036 19 1 6.7328 7.6868 3.6010 20 1 6.4309 5.5655 4.7361 21 1 8.5537 6.7284 4.8845 22 6 9.7342 5.1989 -0.0001 23 6 10.3590 4.3343 -0.8791 24 6 11.7371 4.2248 -0.8789 25 6 12.4903 4.9808 -0.0002 26 6 11.8655 5.8458 0.8786 27 6 10.4874 5.9548 0.8786 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8464 -0.8899 33 1 3.8567 0.6440 -0.8909 34 1 3.8574 0.6437 0.8891 35 1 4.1495 4.3369 1.2501 36 1 2.6200 3.4271 1.2503 37 1 4.0286 2.7996 2.1394 38 1 4.0269 2.8021 -2.1391 39 1 2.6191 3.4285 -1.2482 40 1 4.1486 4.3384 -1.2480 41 1 6.0045 1.9212 -0.8902 42 1 6.0045 1.9205 0.8898 43 1 5.7085 4.5849 -0.0004 44 1 8.7690 3.9872 3.4795 45 1 9.7706 3.7436 -1.5656 46 1 12.2253 3.5490 -1.5653 47 1 13.5667 4.8921 0.0031 48 1 12.4538 6.4362 1.5653 49 1 9.9993 6.6310 1.5649 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361411890.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:48 Heat of formation + Delta-G solvation = -73.321317 kcal Electronic energy + Delta-G solvation = -27725.762167 eV Core-core repulsion = 24038.351517 eV Total energy + Delta-G solvation = -3687.410649 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.28083 -38.53622 -37.58090 -36.60533 -33.57213 -32.75587 -30.78372 -29.63809 -29.44545 -27.54181 -27.20462 -26.48568 -25.92342 -23.89129 -22.71754 -21.22588 -20.42942 -19.17630 -18.56035 -16.99830 -16.50987 -16.16526 -15.84218 -15.33257 -15.19519 -14.85390 -14.62608 -14.59551 -13.92871 -13.67403 -13.63586 -13.42786 -13.27029 -12.95439 -12.43570 -12.30777 -12.12723 -12.06688 -11.92477 -11.79277 -11.42713 -11.41003 -11.31730 -11.23837 -10.99629 -10.73975 -10.65450 -10.56886 -10.39694 -10.28631 -10.01683 -9.73651 -9.63596 -9.32922 -8.69145 -8.25030 -7.89218 -7.64894 -7.35707 -6.11222 -4.27577 2.58743 2.65315 3.18867 3.29783 3.30472 3.57308 4.19321 4.31325 4.50253 4.77443 4.83280 5.00203 5.07016 5.07765 5.09875 5.16723 5.19373 5.34415 5.38569 5.43510 5.56737 5.74016 5.85734 5.89061 5.94840 5.98942 6.00732 6.06845 6.10028 6.13371 6.25297 6.32736 6.40270 6.48762 6.54735 6.65848 6.71912 6.85648 6.95342 7.01747 7.17486 7.25550 7.57642 7.62581 7.68712 7.71145 7.83431 8.20502 8.31248 8.65742 8.86423 9.38916 9.77328 10.89014 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.016066 B = 0.003532 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.400458 B = 7924.705135 C = 9103.609582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.394 6.394 3 C 0.059 3.941 4 C -0.105 4.105 5 C -0.071 4.071 6 C -0.145 4.145 7 C -0.144 4.144 8 C 0.140 3.860 9 N -0.733 5.733 10 C 0.550 3.450 11 O -0.549 6.549 12 C 0.056 3.944 13 H 0.055 0.945 14 C -0.540 4.540 15 H 0.066 0.934 16 C 0.076 3.924 17 N -0.839 5.839 18 Si 0.883 3.117 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.282 1.282 22 C -0.014 4.014 23 C -0.100 4.100 24 C -0.145 4.145 25 C -0.145 4.145 26 C -0.148 4.148 27 C -0.065 4.065 28 H 0.039 0.961 29 H 0.083 0.917 30 H 0.039 0.961 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.051 0.949 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.053 0.947 40 H 0.062 0.938 41 H 0.053 0.947 42 H 0.058 0.942 43 H 0.394 0.606 44 H 0.264 0.736 45 H 0.107 0.893 46 H 0.100 0.900 47 H 0.099 0.901 48 H 0.101 0.899 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.313 -1.964 -5.538 12.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.313 6.313 3 C -0.017 4.017 4 C -0.143 4.143 5 C -0.071 4.071 6 C -0.202 4.202 7 C -0.201 4.201 8 C 0.016 3.984 9 N -0.387 5.387 10 C 0.339 3.661 11 O -0.425 6.425 12 C 0.035 3.965 13 H 0.073 0.927 14 C -0.578 4.578 15 H 0.084 0.916 16 C -0.132 4.132 17 N -0.472 5.472 18 Si 0.710 3.290 19 H -0.195 1.195 20 H -0.210 1.210 21 H -0.208 1.208 22 C -0.015 4.015 23 C -0.118 4.118 24 C -0.163 4.163 25 C -0.164 4.164 26 C -0.167 4.167 27 C -0.083 4.083 28 H 0.058 0.942 29 H 0.102 0.898 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.229 0.771 44 H 0.074 0.926 45 H 0.125 0.875 46 H 0.119 0.881 47 H 0.117 0.883 48 H 0.119 0.881 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.590 -3.008 -5.392 12.259 hybrid contribution -0.772 0.766 1.289 1.686 sum -11.362 -2.242 -4.104 12.287 Atomic orbital electron populations 1.22710 0.81373 1.02526 0.99838 1.87874 1.19416 1.28623 1.95418 1.22731 0.94435 0.84196 1.00373 1.21466 0.92610 0.96642 1.03574 1.20708 0.95442 0.94674 0.96312 1.21946 1.00210 1.01185 0.96903 1.21944 1.00545 1.00727 0.96894 1.21026 0.89660 0.86519 1.01240 1.45817 1.07560 1.06861 1.78488 1.20969 0.80700 0.92255 0.72225 1.90537 1.60834 1.41570 1.49588 1.17883 0.89534 0.91108 0.98003 0.92709 1.20716 1.42316 1.05563 0.89188 0.91575 1.25034 0.94345 0.94864 0.98970 1.70088 1.37072 1.16205 1.23830 0.86668 0.78834 0.79986 0.83485 1.19534 1.20976 1.20844 1.19824 0.95826 0.93260 0.92561 1.20969 0.93646 0.97673 0.99518 1.20819 0.94416 1.00657 1.00403 1.20766 0.98149 0.99140 0.98296 1.20985 0.95393 1.00505 0.99769 1.21139 0.91906 0.98613 0.96634 0.94236 0.89829 0.94203 0.92968 0.93041 0.90949 0.90866 0.91533 0.92984 0.92355 0.92457 0.92804 0.91934 0.92831 0.92389 0.77127 0.92620 0.87522 0.88149 0.88263 0.88107 0.85490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.69 10.70 -35.23 -0.38 -5.06 16 3 C 0.06 0.63 5.23 37.16 0.19 0.83 16 4 C -0.10 -1.26 4.64 -26.73 -0.12 -1.38 16 5 C -0.07 -0.91 0.56 -154.51 -0.09 -0.99 16 6 C -0.15 -1.89 7.95 37.16 0.30 -1.60 16 7 C -0.14 -1.61 7.95 37.16 0.30 -1.31 16 8 C 0.14 2.38 4.56 -4.04 -0.02 2.36 16 9 N -0.73 -14.03 4.86 -60.29 -0.29 -14.32 16 10 C 0.55 12.83 5.45 -10.99 -0.06 12.77 16 11 O -0.55 -14.61 13.95 5.55 0.08 -14.53 16 12 C 0.06 1.30 2.78 -94.08 -0.26 1.04 16 13 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 14 C -0.54 -12.98 7.12 -34.44 -0.25 -13.22 16 15 H 0.07 1.55 7.81 -52.49 -0.41 1.14 16 16 C 0.08 1.89 3.99 -17.82 -0.07 1.82 16 17 N -0.84 -22.76 10.88 55.43 0.60 -22.16 16 18 Si 0.88 19.62 29.54 -169.99 -5.02 14.60 16 19 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 C -0.01 -0.33 4.52 -104.63 -0.47 -0.80 16 23 C -0.10 -2.29 8.21 -39.59 -0.33 -2.61 16 24 C -0.14 -3.01 10.05 -39.58 -0.40 -3.41 16 25 C -0.15 -2.92 10.05 -39.58 -0.40 -3.32 16 26 C -0.15 -3.14 10.05 -39.58 -0.40 -3.54 16 27 C -0.07 -1.53 8.20 -39.58 -0.32 -1.85 16 28 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 30 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.05 0.54 6.43 -51.93 -0.33 0.20 16 32 H 0.05 0.50 6.43 -51.93 -0.33 0.17 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.94 6.86 -51.93 -0.36 0.59 16 36 H 0.05 0.56 6.43 -51.93 -0.33 0.23 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.05 0.51 6.43 -51.93 -0.33 0.18 16 40 H 0.06 0.72 6.86 -51.93 -0.36 0.37 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.39 6.87 6.05 -40.82 -0.25 6.62 16 44 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 45 H 0.11 2.42 7.01 -52.49 -0.37 2.05 16 46 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 47 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 48 H 0.10 1.88 8.06 -52.49 -0.42 1.45 16 49 H 0.13 3.07 6.02 -52.49 -0.32 2.76 16 LS Contribution 383.80 15.07 5.78 5.78 Total: -1.00 -29.90 383.80 -8.53 -38.43 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: -8.02 Total: 11.11 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: -1.28 Total: -13.84 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: 0.31 Total: -36.48 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.30 Total: -19.60 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.90 -8.53 -38.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361411890.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.894 kcal (2) G-P(sol) polarization free energy of solvation -29.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds