Wall clock time and date at job start Tue Mar 31 2020 13:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42903 * 113.99218 * 2 1 4 4 C 1.53000 * 109.46395 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47004 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47287 * 59.99928 * 5 4 3 7 7 C 1.52999 * 109.46776 * 299.99843 * 5 4 3 8 8 C 1.53000 * 109.47004 * 179.97438 * 5 4 3 9 9 N 1.46503 * 109.46980 * 179.97438 * 8 5 4 10 10 C 1.34779 * 120.00328 * 180.02562 * 9 8 5 11 11 O 1.21283 * 119.99419 * 359.97438 * 10 9 8 12 12 C 1.50695 * 120.00080 * 180.02562 * 10 9 8 13 13 H 1.09001 * 109.47295 * 299.99387 * 12 10 9 14 14 C 1.50696 * 109.47530 * 59.99483 * 12 10 9 15 15 H 1.07997 * 120.00260 * 235.33651 * 14 12 10 16 16 C 1.37879 * 119.99977 * 55.33425 * 14 12 10 17 17 N 1.31516 * 119.99735 * 1.97120 * 16 14 12 18 18 Si 1.86800 * 120.00111 * 181.96775 * 16 14 12 19 19 H 1.48495 * 109.47133 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46977 * 120.00228 * 18 16 14 21 21 H 1.48496 * 109.47065 * 239.99944 * 18 16 14 22 22 C 1.50707 * 109.46942 * 179.97438 * 12 10 9 23 23 C 1.38224 * 120.00104 * 47.22099 * 22 12 10 24 24 C 1.38237 * 120.00255 * 180.02562 * 23 22 12 25 25 C 1.38238 * 119.99745 * 359.95072 * 24 23 22 26 26 C 1.38236 * 119.99912 * 0.02562 * 25 24 23 27 27 C 1.38232 * 119.99717 * 227.19961 * 22 12 10 28 28 H 1.08998 * 109.47304 * 60.00076 * 1 2 3 29 29 H 1.09010 * 109.46524 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47133 * 299.99001 * 1 2 3 31 31 H 1.09000 * 109.47110 * 60.00736 * 3 2 1 32 32 H 1.08991 * 109.47279 * 299.99780 * 3 2 1 33 33 H 1.09003 * 109.47777 * 60.00136 * 4 3 2 34 34 H 1.09001 * 109.47533 * 299.99769 * 4 3 2 35 35 H 1.08994 * 109.46988 * 180.02562 * 6 5 4 36 36 H 1.08997 * 109.46827 * 299.99908 * 6 5 4 37 37 H 1.09000 * 109.46791 * 60.00202 * 6 5 4 38 38 H 1.09000 * 109.47565 * 299.99962 * 7 5 4 39 39 H 1.08997 * 109.47448 * 60.00024 * 7 5 4 40 40 H 1.09003 * 109.46965 * 179.97438 * 7 5 4 41 41 H 1.09000 * 109.47119 * 60.00172 * 8 5 4 42 42 H 1.09001 * 109.47533 * 299.99479 * 8 5 4 43 43 H 0.97004 * 120.00070 * 359.97438 * 9 8 5 44 44 H 0.97003 * 120.00319 * 179.97438 * 17 16 14 45 45 H 1.08000 * 120.00315 * 359.97438 * 23 22 12 46 46 H 1.07994 * 120.00683 * 179.97438 * 24 23 22 47 47 H 1.08001 * 120.00281 * 179.72897 * 25 24 23 48 48 H 1.07996 * 120.00326 * 179.97438 * 26 25 24 49 49 H 1.08001 * 120.00068 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5353 1.1848 -0.0006 5 6 4.1576 2.5825 0.0000 6 6 3.7066 3.3410 1.2499 7 6 3.7056 3.3425 -1.2486 8 6 5.6828 2.4617 0.0000 9 7 6.2787 3.8001 0.0000 10 6 7.6190 3.9411 -0.0005 11 8 8.3319 2.9599 -0.0005 12 6 8.2319 5.3178 0.0001 13 1 7.9099 5.8593 -0.8895 14 6 7.7877 6.0650 1.2311 15 1 7.3046 7.0261 1.1345 16 6 7.9979 5.5216 2.4807 17 7 8.6207 4.3694 2.6004 18 14 7.3982 6.4218 4.0036 19 1 6.7328 7.6868 3.6010 20 1 6.4309 5.5655 4.7361 21 1 8.5537 6.7284 4.8845 22 6 9.7342 5.1989 -0.0001 23 6 10.3590 4.3343 -0.8791 24 6 11.7371 4.2248 -0.8789 25 6 12.4903 4.9808 -0.0002 26 6 11.8655 5.8458 0.8786 27 6 10.4874 5.9548 0.8786 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8464 -0.8899 33 1 3.8567 0.6440 -0.8909 34 1 3.8574 0.6437 0.8891 35 1 4.1495 4.3369 1.2501 36 1 2.6200 3.4271 1.2503 37 1 4.0286 2.7996 2.1394 38 1 4.0269 2.8021 -2.1391 39 1 2.6191 3.4285 -1.2482 40 1 4.1486 4.3384 -1.2480 41 1 6.0045 1.9212 -0.8902 42 1 6.0045 1.9205 0.8898 43 1 5.7085 4.5849 -0.0004 44 1 8.7690 3.9872 3.4795 45 1 9.7706 3.7436 -1.5656 46 1 12.2253 3.5490 -1.5653 47 1 13.5667 4.8921 0.0031 48 1 12.4538 6.4362 1.5653 49 1 9.9993 6.6310 1.5649 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361411890.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:48 Heat of formation + Delta-G solvation = -90.076248 kcal Electronic energy + Delta-G solvation = -27726.488715 eV Core-core repulsion = 24038.351517 eV Total energy + Delta-G solvation = -3688.137198 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.84359 -39.82367 -38.93549 -37.87748 -35.45167 -34.29327 -32.61385 -31.33759 -30.45828 -29.18456 -28.20013 -27.52462 -27.04773 -25.64370 -23.85955 -22.93452 -22.08817 -20.92616 -19.70781 -18.64490 -17.76123 -17.24149 -16.99117 -16.95923 -16.64726 -16.62372 -15.98981 -15.79302 -15.41416 -15.31940 -14.93701 -14.61438 -14.45962 -14.29839 -14.04668 -13.90123 -13.78677 -13.62903 -13.03474 -12.93211 -12.85982 -12.80025 -12.66904 -12.47209 -12.26938 -12.23916 -12.22881 -11.75485 -11.71775 -11.63150 -11.41035 -11.35396 -11.13250 -10.63176 -10.52262 -10.12415 -9.57997 -9.36391 -9.08182 -8.04743 -6.24524 0.89306 0.94639 1.39997 1.46403 1.54168 2.35576 2.47731 2.68276 3.02186 3.22804 3.38579 3.69326 3.80962 4.00338 4.20153 4.33334 4.35359 4.36922 4.42350 4.51474 4.52536 4.55437 4.60459 4.64631 4.72051 4.73498 4.84409 4.86095 4.87112 4.96951 5.01261 5.02651 5.06309 5.12097 5.16188 5.17028 5.20153 5.45477 5.47397 5.49045 5.56412 5.72487 5.90130 5.94600 5.99649 6.04208 6.27160 6.44745 6.54753 6.78910 7.14869 7.44511 7.99049 8.94146 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.016066 B = 0.003532 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.400458 B = 7924.705135 C = 9103.609582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.421 6.421 3 C 0.063 3.937 4 C -0.102 4.102 5 C -0.058 4.058 6 C -0.143 4.143 7 C -0.141 4.141 8 C 0.143 3.857 9 N -0.720 5.720 10 C 0.546 3.454 11 O -0.588 6.588 12 C 0.047 3.953 13 H 0.068 0.932 14 C -0.532 4.532 15 H 0.072 0.928 16 C 0.042 3.958 17 N -0.873 5.873 18 Si 0.937 3.063 19 H -0.257 1.257 20 H -0.289 1.289 21 H -0.289 1.289 22 C -0.036 4.036 23 C -0.118 4.118 24 C -0.147 4.147 25 C -0.142 4.142 26 C -0.153 4.153 27 C -0.087 4.087 28 H 0.052 0.948 29 H 0.094 0.906 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.081 0.919 37 H 0.039 0.961 38 H 0.059 0.941 39 H 0.079 0.921 40 H 0.058 0.942 41 H 0.049 0.951 42 H 0.025 0.975 43 H 0.404 0.596 44 H 0.254 0.746 45 H 0.099 0.901 46 H 0.129 0.871 47 H 0.138 0.862 48 H 0.126 0.874 49 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.381 -1.142 -6.093 13.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.341 6.341 3 C -0.013 4.013 4 C -0.140 4.140 5 C -0.058 4.058 6 C -0.201 4.201 7 C -0.198 4.198 8 C 0.018 3.982 9 N -0.373 5.373 10 C 0.336 3.664 11 O -0.468 6.468 12 C 0.026 3.974 13 H 0.086 0.914 14 C -0.570 4.570 15 H 0.090 0.910 16 C -0.162 4.162 17 N -0.507 5.507 18 Si 0.763 3.237 19 H -0.180 1.180 20 H -0.216 1.216 21 H -0.216 1.216 22 C -0.037 4.037 23 C -0.136 4.136 24 C -0.165 4.165 25 C -0.160 4.160 26 C -0.171 4.171 27 C -0.105 4.105 28 H 0.071 0.929 29 H 0.112 0.888 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.100 0.900 37 H 0.058 0.942 38 H 0.078 0.922 39 H 0.098 0.902 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.044 0.956 43 H 0.240 0.760 44 H 0.063 0.937 45 H 0.117 0.883 46 H 0.147 0.853 47 H 0.155 0.845 48 H 0.144 0.856 49 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -11.710 -2.149 -5.961 13.315 hybrid contribution -0.423 0.493 1.413 1.555 sum -12.134 -1.657 -4.549 13.064 Atomic orbital electron populations 1.22915 0.79553 1.03696 1.00897 1.87832 1.21474 1.29164 1.95635 1.22687 0.92919 0.84243 1.01468 1.21391 0.94153 0.95638 1.02794 1.20580 0.92071 0.95721 0.97455 1.21935 1.02024 1.00023 0.96068 1.21932 1.02183 1.00032 0.95656 1.21082 0.92743 0.84915 0.99431 1.45689 1.06534 1.08213 1.76901 1.21023 0.81738 0.91806 0.71856 1.90502 1.62035 1.42595 1.51626 1.18003 0.89894 0.91243 0.98298 0.91450 1.20911 1.41156 1.05463 0.89436 0.90959 1.25544 0.94369 0.95139 1.01170 1.70258 1.39123 1.17926 1.23415 0.85822 0.77925 0.79399 0.80524 1.18032 1.21585 1.21562 1.19959 0.96133 0.94156 0.93428 1.21036 0.94870 0.97938 0.99793 1.21192 0.93690 1.00822 1.00819 1.21173 1.00074 0.97768 0.96978 1.21312 0.94715 1.00776 1.00252 1.21129 0.93210 0.99202 0.96944 0.92902 0.88772 0.93348 0.92288 0.91345 0.91096 0.92420 0.92724 0.90044 0.94186 0.92231 0.90210 0.92308 0.93237 0.95619 0.76013 0.93700 0.88332 0.85333 0.84468 0.85639 0.86975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 113.37 1.25 1.61 16 2 O -0.42 -9.33 10.70 -148.98 -1.59 -10.92 16 3 C 0.06 1.22 5.23 71.98 0.38 1.60 16 4 C -0.10 -2.38 4.64 30.59 0.14 -2.24 16 5 C -0.06 -1.44 0.56 -52.18 -0.03 -1.47 16 6 C -0.14 -3.61 7.95 71.98 0.57 -3.04 16 7 C -0.14 -2.86 7.95 71.98 0.57 -2.29 16 8 C 0.14 4.99 4.56 86.38 0.39 5.39 16 9 N -0.72 -28.14 4.86 -463.05 -2.25 -30.39 16 10 C 0.55 26.23 5.45 87.66 0.48 26.71 16 11 O -0.59 -32.51 13.95 -3.04 -0.04 -32.56 16 12 C 0.05 2.22 2.78 -13.03 -0.04 2.18 16 13 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 14 C -0.53 -25.67 7.12 25.60 0.18 -25.48 16 15 H 0.07 3.34 7.81 -2.91 -0.02 3.32 16 16 C 0.04 2.12 3.99 84.65 0.34 2.46 16 17 N -0.87 -48.58 10.88 21.45 0.23 -48.35 16 18 Si 0.94 40.50 29.54 68.60 2.03 42.53 16 19 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 20 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 21 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 22 C -0.04 -1.74 4.52 -19.87 -0.09 -1.83 16 23 C -0.12 -5.47 8.21 22.27 0.18 -5.29 16 24 C -0.15 -5.94 10.05 22.27 0.22 -5.72 16 25 C -0.14 -5.39 10.05 22.27 0.22 -5.16 16 26 C -0.15 -6.27 10.05 22.27 0.22 -6.05 16 27 C -0.09 -4.11 8.20 22.27 0.18 -3.92 16 28 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 1.06 6.43 -2.39 -0.02 1.04 16 32 H 0.07 1.10 6.43 -2.39 -0.02 1.08 16 33 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.05 1.50 6.86 -2.39 -0.02 1.48 16 36 H 0.08 1.57 6.43 -2.39 -0.02 1.55 16 37 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.08 1.24 6.43 -2.39 -0.02 1.22 16 40 H 0.06 1.25 6.86 -2.39 -0.02 1.23 16 41 H 0.05 1.76 8.14 -2.39 -0.02 1.75 16 42 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.40 14.07 6.05 -92.70 -0.56 13.51 16 44 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 45 H 0.10 4.61 7.01 -2.91 -0.02 4.59 16 46 H 0.13 4.36 8.06 -2.91 -0.02 4.33 16 47 H 0.14 4.13 8.06 -2.91 -0.02 4.11 16 48 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 49 H 0.11 5.52 6.02 -2.91 -0.02 5.50 16 Total: -1.00 -65.78 383.80 3.93 -61.86 By element: Atomic # 1 Polarization: 40.01 SS G_CDS: 0.37 Total: 40.37 kcal Atomic # 6 Polarization: -27.73 SS G_CDS: 5.19 Total: -22.54 kcal Atomic # 7 Polarization: -76.72 SS G_CDS: -2.02 Total: -78.74 kcal Atomic # 8 Polarization: -41.84 SS G_CDS: -1.64 Total: -43.48 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Total: -65.78 3.93 -61.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361411890.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.221 kcal (2) G-P(sol) polarization free energy of solvation -65.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds