Wall clock time and date at job start Tue Mar 31 2020 13:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 114.00143 * 2 1 4 4 C 1.52996 * 109.47340 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47271 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.47448 * 59.99892 * 5 4 3 7 7 C 1.53000 * 109.46862 * 299.99878 * 5 4 3 8 8 C 1.52999 * 109.47290 * 180.02562 * 5 4 3 9 9 N 1.46495 * 109.47243 * 179.97438 * 8 5 4 10 10 C 1.34778 * 120.00321 * 179.97438 * 9 8 5 11 11 O 1.21279 * 119.99767 * 0.02562 * 10 9 8 12 12 C 1.50697 * 120.00150 * 179.97438 * 10 9 8 13 13 H 1.08999 * 109.47276 * 60.00374 * 12 10 9 14 14 C 1.50701 * 109.47254 * 300.00433 * 12 10 9 15 15 H 1.07998 * 119.99934 * 124.62155 * 14 12 10 16 16 C 1.37879 * 120.00066 * 304.34159 * 14 12 10 17 17 N 1.31521 * 120.00057 * 6.38614 * 16 14 12 18 18 Si 1.86795 * 120.00243 * 186.38187 * 16 14 12 19 19 H 1.48502 * 109.47294 * 60.00126 * 18 16 14 20 20 H 1.48498 * 109.47568 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47204 * 300.00545 * 18 16 14 22 22 C 1.50697 * 109.47039 * 180.02562 * 12 10 9 23 23 C 1.38237 * 120.00283 * 313.11562 * 22 12 10 24 24 C 1.38232 * 120.00497 * 179.81076 * 23 22 12 25 25 C 1.38237 * 119.99539 * 0.39808 * 24 23 22 26 26 C 1.38230 * 120.00431 * 359.85241 * 25 24 23 27 27 C 1.38237 * 120.00167 * 133.38639 * 22 12 10 28 28 H 1.09004 * 109.46850 * 60.00227 * 1 2 3 29 29 H 1.09005 * 109.47020 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47070 * 300.00078 * 1 2 3 31 31 H 1.09002 * 109.46820 * 60.00081 * 3 2 1 32 32 H 1.08998 * 109.46855 * 299.99863 * 3 2 1 33 33 H 1.08999 * 109.47000 * 59.99943 * 4 3 2 34 34 H 1.08998 * 109.47335 * 299.99937 * 4 3 2 35 35 H 1.08991 * 109.47369 * 180.02562 * 6 5 4 36 36 H 1.09004 * 109.47019 * 300.00636 * 6 5 4 37 37 H 1.08997 * 109.46477 * 59.99993 * 6 5 4 38 38 H 1.09002 * 109.47601 * 300.00135 * 7 5 4 39 39 H 1.09007 * 109.47275 * 59.99938 * 7 5 4 40 40 H 1.08996 * 109.47490 * 179.97438 * 7 5 4 41 41 H 1.08999 * 109.47438 * 59.99334 * 8 5 4 42 42 H 1.09008 * 109.46849 * 299.99403 * 8 5 4 43 43 H 0.97009 * 120.00194 * 359.97438 * 9 8 5 44 44 H 0.96991 * 120.00161 * 179.97438 * 17 16 14 45 45 H 1.08010 * 119.99544 * 359.97438 * 23 22 12 46 46 H 1.08001 * 120.00303 * 180.22770 * 24 23 22 47 47 H 1.08005 * 119.99967 * 179.83335 * 25 24 23 48 48 H 1.08006 * 120.00374 * 179.97438 * 26 25 24 49 49 H 1.08004 * 120.00196 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1578 2.5824 0.0013 6 6 3.7058 3.3414 1.2505 7 6 3.7069 3.3419 -1.2480 8 6 5.6830 2.4616 0.0013 9 7 6.2788 3.7999 0.0013 10 6 7.6192 3.9409 0.0018 11 8 8.3321 2.9597 0.0018 12 6 8.2321 5.3176 0.0012 13 1 7.9102 5.8590 0.8907 14 6 7.7879 6.0647 -1.2298 15 1 7.3043 7.0255 -1.1332 16 6 8.0042 5.5243 -2.4798 17 7 8.4824 4.3046 -2.5951 18 14 7.6177 6.5244 -4.0094 19 1 8.4338 7.7651 -4.0089 20 1 7.9354 5.7229 -5.2184 21 1 6.1760 6.8804 -4.0169 22 6 9.7344 5.1986 0.0014 23 6 10.3588 4.3287 0.8756 24 6 11.7366 4.2167 0.8731 25 6 12.4905 4.9806 0.0019 26 6 11.8665 5.8542 -0.8688 27 6 10.4884 5.9634 -0.8690 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.8574 0.6436 -0.8891 34 1 3.8567 0.6439 0.8908 35 1 4.1487 4.3372 1.2507 36 1 2.6191 3.4274 1.2501 37 1 4.0270 2.8002 2.1404 38 1 4.0288 2.8013 -2.1380 39 1 2.6202 3.4280 -1.2485 40 1 4.1498 4.3378 -1.2474 41 1 6.0047 1.9210 -0.8888 42 1 6.0046 1.9203 0.8912 43 1 5.7087 4.5847 0.0009 44 1 8.6342 3.9243 -3.4744 45 1 9.7700 3.7347 1.5590 46 1 12.2242 3.5344 1.5536 47 1 13.5671 4.8951 0.0017 48 1 12.4555 6.4514 -1.5493 49 1 10.0009 6.6459 -1.5493 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361411892.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:52 Heat of formation + Delta-G solvation = -73.276898 kcal Electronic energy + Delta-G solvation = -27720.998456 eV Core-core repulsion = 24033.589732 eV Total energy + Delta-G solvation = -3687.408723 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.25561 -38.53608 -37.57917 -36.58730 -33.55562 -32.71681 -30.80605 -29.68428 -29.42864 -27.53115 -27.18248 -26.47235 -25.90457 -23.90049 -22.70328 -21.25084 -20.44060 -19.14482 -18.53865 -16.98503 -16.51407 -16.15336 -15.84544 -15.32652 -15.18186 -14.84104 -14.60848 -14.57166 -13.92761 -13.67967 -13.63753 -13.41998 -13.24876 -12.94560 -12.42971 -12.30343 -12.15356 -12.06906 -11.92366 -11.76505 -11.41540 -11.37757 -11.30191 -11.25139 -10.93811 -10.78878 -10.63603 -10.54856 -10.39647 -10.26120 -10.02385 -9.72487 -9.65364 -9.36180 -8.71216 -8.20308 -7.83969 -7.68379 -7.39099 -6.12560 -4.26609 2.55020 2.60503 3.20770 3.29029 3.30026 3.58586 4.21901 4.33352 4.55257 4.79651 4.85184 5.00093 5.05499 5.08936 5.11061 5.17026 5.20760 5.35851 5.39907 5.44767 5.59008 5.75967 5.85971 5.87550 5.96774 5.98213 6.01097 6.05490 6.10077 6.15324 6.28359 6.35539 6.39624 6.49496 6.57693 6.66013 6.69390 6.83585 6.95155 7.02902 7.14313 7.21872 7.55002 7.63148 7.68483 7.71022 7.81664 8.16804 8.28630 8.67262 8.89464 9.39361 9.82690 10.89051 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.016129 B = 0.003514 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.630252 B = 7965.467721 C = 9137.029121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.394 6.394 3 C 0.059 3.941 4 C -0.105 4.105 5 C -0.071 4.071 6 C -0.144 4.144 7 C -0.144 4.144 8 C 0.141 3.859 9 N -0.732 5.732 10 C 0.553 3.447 11 O -0.551 6.551 12 C 0.056 3.944 13 H 0.055 0.945 14 C -0.543 4.543 15 H 0.065 0.935 16 C 0.078 3.922 17 N -0.840 5.840 18 Si 0.883 3.117 19 H -0.274 1.274 20 H -0.287 1.287 21 H -0.276 1.276 22 C -0.015 4.015 23 C -0.099 4.099 24 C -0.143 4.143 25 C -0.145 4.145 26 C -0.147 4.147 27 C -0.074 4.074 28 H 0.039 0.961 29 H 0.083 0.917 30 H 0.039 0.961 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.050 0.950 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.052 0.948 43 H 0.393 0.607 44 H 0.265 0.735 45 H 0.108 0.892 46 H 0.101 0.899 47 H 0.100 0.900 48 H 0.102 0.898 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.973 -1.894 5.540 12.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.313 6.313 3 C -0.017 4.017 4 C -0.143 4.143 5 C -0.071 4.071 6 C -0.201 4.201 7 C -0.202 4.202 8 C 0.017 3.983 9 N -0.386 5.386 10 C 0.343 3.657 11 O -0.427 6.427 12 C 0.035 3.965 13 H 0.073 0.927 14 C -0.580 4.580 15 H 0.083 0.917 16 C -0.130 4.130 17 N -0.472 5.472 18 Si 0.711 3.289 19 H -0.199 1.199 20 H -0.213 1.213 21 H -0.201 1.201 22 C -0.016 4.016 23 C -0.117 4.117 24 C -0.161 4.161 25 C -0.164 4.164 26 C -0.165 4.165 27 C -0.092 4.092 28 H 0.058 0.942 29 H 0.102 0.898 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.228 0.772 44 H 0.076 0.924 45 H 0.126 0.874 46 H 0.119 0.881 47 H 0.118 0.882 48 H 0.120 0.880 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.259 -2.951 5.392 11.960 hybrid contribution -0.662 0.870 -1.285 1.687 sum -10.921 -2.081 4.107 11.852 Atomic orbital electron populations 1.22709 0.81388 1.02514 0.99831 1.87872 1.19402 1.28647 1.95417 1.22734 0.94457 0.84178 1.00364 1.21464 0.92580 0.96678 1.03558 1.20708 0.95510 0.94626 0.96286 1.21942 1.00510 1.00733 0.96911 1.21938 1.00119 1.01198 0.96911 1.21007 0.89570 0.86567 1.01196 1.45771 1.07534 1.06777 1.78512 1.20870 0.80703 0.92115 0.72053 1.90523 1.60829 1.41576 1.49804 1.17868 0.89380 0.91293 0.97971 0.92714 1.20636 1.42714 1.05495 0.89179 0.91692 1.25019 0.94351 0.94655 0.98954 1.70020 1.40338 1.12709 1.24143 0.86792 0.78938 0.80441 0.82774 1.19933 1.21305 1.20150 1.19882 0.95975 0.93200 0.92583 1.20998 0.93646 0.97580 0.99458 1.20843 0.94422 1.00513 1.00368 1.20779 0.98208 0.99000 0.98376 1.20998 0.95358 1.00337 0.99847 1.21189 0.92025 0.98927 0.97059 0.94216 0.89836 0.94240 0.93057 0.92970 0.90861 0.90981 0.91948 0.92840 0.92485 0.92348 0.93067 0.91527 0.92361 0.92934 0.77210 0.92446 0.87369 0.88053 0.88176 0.88013 0.85434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.72 10.70 -35.23 -0.38 -5.10 16 3 C 0.06 0.64 5.23 37.16 0.19 0.83 16 4 C -0.10 -1.27 4.64 -26.73 -0.12 -1.39 16 5 C -0.07 -0.92 0.56 -154.51 -0.09 -1.00 16 6 C -0.14 -1.63 7.95 37.16 0.30 -1.33 16 7 C -0.14 -1.90 7.95 37.16 0.30 -1.61 16 8 C 0.14 2.42 4.56 -4.04 -0.02 2.40 16 9 N -0.73 -14.13 4.86 -60.30 -0.29 -14.43 16 10 C 0.55 12.97 5.28 -10.99 -0.06 12.91 16 11 O -0.55 -14.69 13.86 5.56 0.08 -14.61 16 12 C 0.06 1.31 2.78 -94.08 -0.26 1.05 16 13 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 14 C -0.54 -13.06 7.11 -34.44 -0.24 -13.31 16 15 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16 16 C 0.08 1.96 3.90 -17.82 -0.07 1.89 16 17 N -0.84 -22.77 11.11 55.43 0.62 -22.16 16 18 Si 0.88 19.67 29.54 -169.99 -5.02 14.65 16 19 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 20 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 22 C -0.02 -0.37 4.63 -104.62 -0.48 -0.85 16 23 C -0.10 -2.25 8.21 -39.58 -0.32 -2.57 16 24 C -0.14 -2.96 10.05 -39.58 -0.40 -3.36 16 25 C -0.15 -2.89 10.05 -39.58 -0.40 -3.29 16 26 C -0.15 -3.09 10.05 -39.58 -0.40 -3.48 16 27 C -0.07 -1.73 8.46 -39.58 -0.33 -2.07 16 28 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.50 6.43 -51.93 -0.33 0.17 16 32 H 0.05 0.54 6.43 -51.93 -0.33 0.21 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.73 6.86 -51.93 -0.36 0.37 16 36 H 0.05 0.52 6.43 -51.93 -0.33 0.18 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.05 0.56 6.43 -51.93 -0.33 0.23 16 40 H 0.07 0.96 6.86 -51.93 -0.36 0.60 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.05 0.91 8.14 -51.92 -0.42 0.49 16 43 H 0.39 6.95 6.05 -40.82 -0.25 6.71 16 44 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 45 H 0.11 2.45 6.99 -52.48 -0.37 2.08 16 46 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 47 H 0.10 1.68 8.06 -52.48 -0.42 1.26 16 48 H 0.10 1.87 8.06 -52.48 -0.42 1.44 16 49 H 0.13 3.06 6.05 -52.48 -0.32 2.75 16 LS Contribution 384.04 15.07 5.79 5.79 Total: -1.00 -29.79 384.04 -8.53 -38.32 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -8.02 Total: 11.33 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: -1.30 Total: -13.79 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: 0.32 Total: -36.58 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -0.30 Total: -19.71 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.79 -8.53 -38.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361411892.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.958 kcal (2) G-P(sol) polarization free energy of solvation -29.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds