Wall clock time and date at job start Tue Mar 31 2020 13:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 114.00143 * 2 1 4 4 C 1.52996 * 109.47340 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47271 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.47448 * 59.99892 * 5 4 3 7 7 C 1.53000 * 109.46862 * 299.99878 * 5 4 3 8 8 C 1.52999 * 109.47290 * 180.02562 * 5 4 3 9 9 N 1.46495 * 109.47243 * 179.97438 * 8 5 4 10 10 C 1.34778 * 120.00321 * 179.97438 * 9 8 5 11 11 O 1.21279 * 119.99767 * 0.02562 * 10 9 8 12 12 C 1.50697 * 120.00150 * 179.97438 * 10 9 8 13 13 H 1.08999 * 109.47276 * 60.00374 * 12 10 9 14 14 C 1.50701 * 109.47254 * 300.00433 * 12 10 9 15 15 H 1.07998 * 119.99934 * 124.62155 * 14 12 10 16 16 C 1.37879 * 120.00066 * 304.34159 * 14 12 10 17 17 N 1.31521 * 120.00057 * 6.38614 * 16 14 12 18 18 Si 1.86795 * 120.00243 * 186.38187 * 16 14 12 19 19 H 1.48502 * 109.47294 * 60.00126 * 18 16 14 20 20 H 1.48498 * 109.47568 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47204 * 300.00545 * 18 16 14 22 22 C 1.50697 * 109.47039 * 180.02562 * 12 10 9 23 23 C 1.38237 * 120.00283 * 313.11562 * 22 12 10 24 24 C 1.38232 * 120.00497 * 179.81076 * 23 22 12 25 25 C 1.38237 * 119.99539 * 0.39808 * 24 23 22 26 26 C 1.38230 * 120.00431 * 359.85241 * 25 24 23 27 27 C 1.38237 * 120.00167 * 133.38639 * 22 12 10 28 28 H 1.09004 * 109.46850 * 60.00227 * 1 2 3 29 29 H 1.09005 * 109.47020 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47070 * 300.00078 * 1 2 3 31 31 H 1.09002 * 109.46820 * 60.00081 * 3 2 1 32 32 H 1.08998 * 109.46855 * 299.99863 * 3 2 1 33 33 H 1.08999 * 109.47000 * 59.99943 * 4 3 2 34 34 H 1.08998 * 109.47335 * 299.99937 * 4 3 2 35 35 H 1.08991 * 109.47369 * 180.02562 * 6 5 4 36 36 H 1.09004 * 109.47019 * 300.00636 * 6 5 4 37 37 H 1.08997 * 109.46477 * 59.99993 * 6 5 4 38 38 H 1.09002 * 109.47601 * 300.00135 * 7 5 4 39 39 H 1.09007 * 109.47275 * 59.99938 * 7 5 4 40 40 H 1.08996 * 109.47490 * 179.97438 * 7 5 4 41 41 H 1.08999 * 109.47438 * 59.99334 * 8 5 4 42 42 H 1.09008 * 109.46849 * 299.99403 * 8 5 4 43 43 H 0.97009 * 120.00194 * 359.97438 * 9 8 5 44 44 H 0.96991 * 120.00161 * 179.97438 * 17 16 14 45 45 H 1.08010 * 119.99544 * 359.97438 * 23 22 12 46 46 H 1.08001 * 120.00303 * 180.22770 * 24 23 22 47 47 H 1.08005 * 119.99967 * 179.83335 * 25 24 23 48 48 H 1.08006 * 120.00374 * 179.97438 * 26 25 24 49 49 H 1.08004 * 120.00196 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1578 2.5824 0.0013 6 6 3.7058 3.3414 1.2505 7 6 3.7069 3.3419 -1.2480 8 6 5.6830 2.4616 0.0013 9 7 6.2788 3.7999 0.0013 10 6 7.6192 3.9409 0.0018 11 8 8.3321 2.9597 0.0018 12 6 8.2321 5.3176 0.0012 13 1 7.9102 5.8590 0.8907 14 6 7.7879 6.0647 -1.2298 15 1 7.3043 7.0255 -1.1332 16 6 8.0042 5.5243 -2.4798 17 7 8.4824 4.3046 -2.5951 18 14 7.6177 6.5244 -4.0094 19 1 8.4338 7.7651 -4.0089 20 1 7.9354 5.7229 -5.2184 21 1 6.1760 6.8804 -4.0169 22 6 9.7344 5.1986 0.0014 23 6 10.3588 4.3287 0.8756 24 6 11.7366 4.2167 0.8731 25 6 12.4905 4.9806 0.0019 26 6 11.8665 5.8542 -0.8688 27 6 10.4884 5.9634 -0.8690 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.8574 0.6436 -0.8891 34 1 3.8567 0.6439 0.8908 35 1 4.1487 4.3372 1.2507 36 1 2.6191 3.4274 1.2501 37 1 4.0270 2.8002 2.1404 38 1 4.0288 2.8013 -2.1380 39 1 2.6202 3.4280 -1.2485 40 1 4.1498 4.3378 -1.2474 41 1 6.0047 1.9210 -0.8888 42 1 6.0046 1.9203 0.8912 43 1 5.7087 4.5847 0.0009 44 1 8.6342 3.9243 -3.4744 45 1 9.7700 3.7347 1.5590 46 1 12.2242 3.5344 1.5536 47 1 13.5671 4.8951 0.0017 48 1 12.4555 6.4514 -1.5493 49 1 10.0009 6.6459 -1.5493 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361411892.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:51 Heat of formation + Delta-G solvation = -89.960136 kcal Electronic energy + Delta-G solvation = -27721.721895 eV Core-core repulsion = 24033.589732 eV Total energy + Delta-G solvation = -3688.132163 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.82468 -39.82606 -38.93005 -37.86658 -35.43586 -34.26279 -32.63346 -31.37074 -30.44973 -29.17422 -28.19304 -27.51373 -27.04262 -25.65318 -23.85191 -22.94661 -22.09331 -20.90095 -19.69711 -18.64242 -17.76787 -17.23910 -16.98665 -16.95575 -16.64127 -16.60073 -15.97146 -15.78823 -15.41348 -15.33585 -14.93207 -14.60536 -14.45200 -14.29122 -14.04977 -13.93210 -13.73964 -13.63839 -13.04677 -12.92611 -12.85422 -12.70127 -12.65702 -12.55473 -12.26472 -12.23365 -12.22377 -11.76571 -11.70972 -11.62323 -11.42168 -11.35354 -11.16003 -10.64151 -10.51917 -10.07876 -9.53947 -9.38958 -9.10364 -8.06480 -6.23796 0.86913 0.91190 1.42831 1.46553 1.51524 2.37455 2.49918 2.70919 3.04152 3.21949 3.36989 3.70505 3.81926 4.01245 4.20765 4.33331 4.34324 4.35729 4.43187 4.49725 4.53080 4.55704 4.60893 4.64501 4.72452 4.74294 4.84962 4.86861 4.87541 4.97563 5.00986 5.01860 5.07085 5.12017 5.15643 5.17699 5.19931 5.45398 5.46461 5.49697 5.53967 5.71941 5.88283 5.93359 5.98349 6.07249 6.27524 6.42376 6.52354 6.78579 7.18042 7.44742 8.03596 8.93567 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.016129 B = 0.003514 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.630252 B = 7965.467721 C = 9137.029121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.421 6.421 3 C 0.063 3.937 4 C -0.101 4.101 5 C -0.058 4.058 6 C -0.141 4.141 7 C -0.142 4.142 8 C 0.144 3.856 9 N -0.720 5.720 10 C 0.550 3.450 11 O -0.589 6.589 12 C 0.047 3.953 13 H 0.067 0.933 14 C -0.536 4.536 15 H 0.072 0.928 16 C 0.046 3.954 17 N -0.873 5.873 18 Si 0.935 3.065 19 H -0.268 1.268 20 H -0.299 1.299 21 H -0.265 1.265 22 C -0.038 4.038 23 C -0.117 4.117 24 C -0.146 4.146 25 C -0.142 4.142 26 C -0.151 4.151 27 C -0.096 4.096 28 H 0.048 0.952 29 H 0.094 0.906 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.079 0.921 37 H 0.058 0.942 38 H 0.039 0.961 39 H 0.080 0.920 40 H 0.053 0.947 41 H 0.025 0.975 42 H 0.048 0.952 43 H 0.402 0.598 44 H 0.255 0.745 45 H 0.099 0.901 46 H 0.130 0.870 47 H 0.139 0.861 48 H 0.128 0.872 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.919 -1.019 6.065 13.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.341 6.341 3 C -0.013 4.013 4 C -0.140 4.140 5 C -0.058 4.058 6 C -0.198 4.198 7 C -0.199 4.199 8 C 0.020 3.980 9 N -0.373 5.373 10 C 0.340 3.660 11 O -0.469 6.469 12 C 0.026 3.974 13 H 0.085 0.915 14 C -0.573 4.573 15 H 0.090 0.910 16 C -0.159 4.159 17 N -0.507 5.507 18 Si 0.761 3.239 19 H -0.193 1.193 20 H -0.226 1.226 21 H -0.190 1.190 22 C -0.039 4.039 23 C -0.135 4.135 24 C -0.164 4.164 25 C -0.160 4.160 26 C -0.169 4.169 27 C -0.114 4.114 28 H 0.066 0.934 29 H 0.112 0.888 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.058 0.942 39 H 0.099 0.901 40 H 0.072 0.928 41 H 0.043 0.957 42 H 0.066 0.934 43 H 0.238 0.762 44 H 0.064 0.936 45 H 0.117 0.883 46 H 0.148 0.852 47 H 0.157 0.843 48 H 0.146 0.854 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.256 -2.037 5.931 12.886 hybrid contribution -0.352 0.579 -1.399 1.554 sum -11.608 -1.458 4.533 12.547 Atomic orbital electron populations 1.22915 0.79556 1.03696 1.00893 1.87830 1.21472 1.29167 1.95633 1.22686 0.92924 0.84237 1.01454 1.21386 0.94140 0.95648 1.02780 1.20577 0.92128 0.95691 0.97423 1.21928 1.02150 1.00020 0.95678 1.21919 1.01918 0.99970 0.96096 1.21056 0.92672 0.84967 0.99337 1.45649 1.06541 1.08097 1.76968 1.20941 0.81714 0.91706 0.71666 1.90488 1.62012 1.42608 1.51813 1.17986 0.89819 0.91366 0.98233 0.91515 1.20849 1.41621 1.05412 0.89447 0.91012 1.25525 0.94197 0.95022 1.01161 1.70195 1.42504 1.14388 1.23634 0.85965 0.79256 0.79127 0.79531 1.19334 1.22577 1.19027 1.20010 0.96217 0.94167 0.93526 1.21057 0.94896 0.97844 0.99745 1.21216 0.93662 1.00711 1.00769 1.21194 1.00153 0.97599 0.97012 1.21334 0.94644 1.00609 1.00287 1.21187 0.93364 0.99481 0.97396 0.93358 0.88762 0.92905 0.91366 0.92294 0.92415 0.91124 0.92363 0.90233 0.92241 0.94159 0.90119 0.92838 0.95669 0.93355 0.76151 0.93621 0.88252 0.85235 0.84327 0.85430 0.86857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 113.37 1.25 1.62 16 2 O -0.42 -9.40 10.70 -148.98 -1.59 -10.99 16 3 C 0.06 1.24 5.23 71.98 0.38 1.61 16 4 C -0.10 -2.41 4.64 30.59 0.14 -2.26 16 5 C -0.06 -1.46 0.56 -52.18 -0.03 -1.49 16 6 C -0.14 -2.91 7.95 71.98 0.57 -2.34 16 7 C -0.14 -3.63 7.95 71.98 0.57 -3.06 16 8 C 0.14 5.11 4.56 86.38 0.39 5.50 16 9 N -0.72 -28.46 4.86 -463.07 -2.25 -30.71 16 10 C 0.55 26.57 5.28 87.66 0.46 27.04 16 11 O -0.59 -32.71 13.86 -3.02 -0.04 -32.75 16 12 C 0.05 2.24 2.78 -13.03 -0.04 2.21 16 13 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 14 C -0.54 -25.93 7.11 25.60 0.18 -25.75 16 15 H 0.07 3.31 7.82 -2.91 -0.02 3.29 16 16 C 0.05 2.30 3.90 84.65 0.33 2.63 16 17 N -0.87 -48.67 11.11 21.45 0.24 -48.43 16 18 Si 0.93 40.50 29.54 68.60 2.03 42.53 16 19 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 20 H -0.30 -13.50 7.11 99.48 0.71 -12.79 16 21 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 22 C -0.04 -1.86 4.63 -19.87 -0.09 -1.95 16 23 C -0.12 -5.40 8.21 22.27 0.18 -5.22 16 24 C -0.15 -5.82 10.05 22.27 0.22 -5.59 16 25 C -0.14 -5.30 10.05 22.27 0.22 -5.07 16 26 C -0.15 -6.11 10.05 22.27 0.22 -5.89 16 27 C -0.10 -4.51 8.46 22.27 0.19 -4.33 16 28 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 29 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 30 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.07 1.11 6.43 -2.39 -0.02 1.10 16 32 H 0.06 1.07 6.43 -2.39 -0.02 1.06 16 33 H 0.06 1.53 8.14 -2.39 -0.02 1.52 16 34 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.06 1.26 6.86 -2.39 -0.02 1.25 16 36 H 0.08 1.26 6.43 -2.38 -0.02 1.25 16 37 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.08 1.58 6.43 -2.38 -0.02 1.57 16 40 H 0.05 1.50 6.86 -2.39 -0.02 1.49 16 41 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.05 1.74 8.14 -2.38 -0.02 1.73 16 43 H 0.40 14.29 6.05 -92.70 -0.56 13.73 16 44 H 0.25 14.26 8.31 -92.72 -0.77 13.49 16 45 H 0.10 4.64 6.99 -2.91 -0.02 4.62 16 46 H 0.13 4.34 8.06 -2.91 -0.02 4.32 16 47 H 0.14 4.09 8.06 -2.91 -0.02 4.06 16 48 H 0.13 4.39 8.06 -2.91 -0.02 4.37 16 49 H 0.11 5.52 6.05 -2.91 -0.02 5.50 16 Total: -1.00 -65.69 384.04 3.91 -61.77 By element: Atomic # 1 Polarization: 40.54 SS G_CDS: 0.37 Total: 40.91 kcal Atomic # 6 Polarization: -27.50 SS G_CDS: 5.17 Total: -22.33 kcal Atomic # 7 Polarization: -77.13 SS G_CDS: -2.01 Total: -79.14 kcal Atomic # 8 Polarization: -42.11 SS G_CDS: -1.64 Total: -43.75 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Total: -65.69 3.91 -61.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361411892.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.187 kcal (2) G-P(sol) polarization free energy of solvation -65.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds