Wall clock time and date at job start Tue Mar 31 2020 12:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52991 * 109.47483 * 2 1 4 4 C 1.53001 * 109.46746 * 239.99945 * 2 1 3 5 5 C 1.52999 * 109.47129 * 120.00577 * 2 1 3 6 6 C 1.53000 * 109.47301 * 54.05639 * 5 2 1 7 7 H 1.08997 * 109.47529 * 306.51142 * 6 5 2 8 8 O 1.42901 * 109.46766 * 66.50899 * 6 5 2 9 9 C 1.53003 * 109.47146 * 186.50565 * 6 5 2 10 10 N 1.46505 * 109.46925 * 180.02562 * 9 6 5 11 11 C 1.34776 * 119.99703 * 180.02562 * 10 9 6 12 12 O 1.21277 * 120.00119 * 359.97438 * 11 10 9 13 13 C 1.50696 * 119.99702 * 180.02562 * 11 10 9 14 14 H 1.08994 * 109.47219 * 299.99168 * 13 11 10 15 15 C 1.50694 * 109.47461 * 59.99719 * 13 11 10 16 16 H 1.08001 * 120.00098 * 234.85167 * 15 13 11 17 17 C 1.37876 * 120.00351 * 54.85216 * 15 13 11 18 18 N 1.31514 * 119.99518 * 1.93260 * 17 15 13 19 19 Si 1.86796 * 120.00283 * 181.93477 * 17 15 13 20 20 H 1.48505 * 109.47181 * 89.99857 * 19 17 15 21 21 H 1.48500 * 109.47143 * 209.99543 * 19 17 15 22 22 H 1.48495 * 109.47423 * 329.99843 * 19 17 15 23 23 C 1.50706 * 109.47051 * 179.97438 * 13 11 10 24 24 C 1.38234 * 119.99959 * 226.86211 * 23 13 11 25 25 C 1.38228 * 120.00194 * 179.78815 * 24 23 13 26 26 C 1.38233 * 120.00007 * 0.43459 * 25 24 23 27 27 C 1.38237 * 119.99829 * 359.81589 * 26 25 24 28 28 C 1.38228 * 120.00111 * 47.12777 * 23 13 11 29 29 H 1.09000 * 109.47236 * 299.99616 * 1 2 3 30 30 H 1.09006 * 109.46937 * 59.99838 * 1 2 3 31 31 H 1.08998 * 109.47298 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47359 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47337 * 300.00222 * 3 2 1 34 34 H 1.09000 * 109.47067 * 60.00161 * 3 2 1 35 35 H 1.08997 * 109.48008 * 309.18657 * 4 2 1 36 36 H 1.08995 * 109.47312 * 69.19340 * 4 2 1 37 37 H 1.09007 * 109.46797 * 189.18717 * 4 2 1 38 38 H 1.08995 * 109.47598 * 174.06161 * 5 2 1 39 39 H 1.09003 * 109.46549 * 294.06339 * 5 2 1 40 40 H 0.96700 * 114.00288 * 59.99682 * 8 6 5 41 41 H 1.08994 * 109.46909 * 300.00446 * 9 6 5 42 42 H 1.09001 * 109.46858 * 60.00676 * 9 6 5 43 43 H 0.96995 * 119.99917 * 0.02562 * 10 9 6 44 44 H 0.97003 * 120.00242 * 180.02562 * 18 17 15 45 45 H 1.08003 * 119.99827 * 359.97438 * 24 23 13 46 46 H 1.08007 * 120.00182 * 180.27182 * 25 24 23 47 47 H 1.08001 * 120.00434 * 179.84151 * 26 25 24 48 48 H 1.08000 * 119.99835 * 180.02562 * 27 26 25 49 49 H 1.08001 * 120.00481 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7214 1.2492 6 6 1.4117 -2.1143 1.3260 7 1 0.3271 -2.0278 1.2611 8 8 1.8914 -2.9135 0.2429 9 6 1.7924 -2.7730 2.6535 10 7 1.1912 -4.1070 2.7267 11 6 1.3916 -4.8776 3.8141 12 8 2.0699 -4.4669 4.7318 13 6 0.7738 -6.2500 3.8892 14 1 -0.3108 -6.1643 3.8236 15 6 1.2811 -7.0925 2.7474 16 1 0.5823 -7.5698 2.0764 17 6 2.6374 -7.2542 2.5594 18 7 3.4876 -6.7045 3.3987 19 14 3.2672 -8.2539 1.1126 20 1 3.4629 -7.3614 -0.0580 21 1 4.5609 -8.8870 1.4741 22 1 2.2785 -9.3081 0.7715 23 6 1.1486 -6.8988 5.1968 24 6 1.6048 -8.2036 5.2153 25 6 1.9528 -8.7972 6.4141 26 6 1.8360 -8.0891 7.5956 27 6 1.3748 -6.7861 7.5777 28 6 1.0310 -6.1910 6.3783 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1301 1.4424 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6768 1.9562 0.8900 35 1 1.5489 -1.6906 -1.3352 36 1 1.8168 -0.1215 -2.1316 37 1 3.1175 -0.8656 -1.1710 38 1 3.1247 -0.8144 1.1977 39 1 1.7660 -0.1498 2.1360 40 1 2.8510 -3.0332 0.2372 41 1 2.8769 -2.8594 2.7183 42 1 1.4264 -2.1633 3.4796 43 1 0.6490 -4.4356 1.9926 44 1 4.4419 -6.8179 3.2663 45 1 1.6923 -8.7581 4.2927 46 1 2.3134 -9.8152 6.4281 47 1 2.1054 -8.5538 8.5326 48 1 1.2840 -6.2327 8.5007 49 1 0.6708 -5.1729 6.3644 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362158462.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:00 Heat of formation + Delta-G solvation = -83.859585 kcal Electronic energy + Delta-G solvation = -27858.516783 eV Core-core repulsion = 24170.649159 eV Total energy + Delta-G solvation = -3687.867623 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.29941 -38.65748 -37.30263 -35.74943 -33.57081 -33.25129 -30.79592 -30.04996 -29.64253 -27.48484 -27.37114 -27.18381 -25.45654 -23.70987 -21.66629 -21.21766 -20.47886 -19.23326 -18.75171 -16.86352 -16.36318 -16.02074 -15.62847 -15.17448 -14.96085 -14.75109 -14.43188 -14.25626 -14.13013 -13.82342 -13.59608 -13.29638 -12.97392 -12.54516 -12.43100 -12.27873 -12.16556 -12.08834 -11.93230 -11.69661 -11.59034 -11.43209 -11.25752 -11.21125 -10.94449 -10.86031 -10.73086 -10.68351 -10.40309 -10.34654 -10.01157 -9.66053 -9.50322 -9.32058 -8.67457 -8.25123 -7.92475 -7.65813 -7.36208 -6.09567 -4.25256 2.58100 2.64372 3.23107 3.32006 3.33166 4.08227 4.25643 4.40525 4.59794 4.68140 4.79350 4.82284 5.06569 5.17869 5.19975 5.23702 5.36142 5.53686 5.54287 5.59801 5.71895 5.75655 5.84983 5.87629 5.88222 5.96874 5.99944 6.05649 6.08696 6.11787 6.20882 6.25459 6.41358 6.44311 6.51583 6.63261 6.70977 6.84835 6.95229 7.16899 7.24899 7.55899 7.60108 7.68181 7.72846 7.82119 7.84464 8.20007 8.31510 8.67458 8.87768 9.41202 9.76118 10.90847 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.015843 B = 0.003709 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.931257 B = 7548.196901 C = 8800.959524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.064 4.064 3 C -0.142 4.142 4 C -0.147 4.147 5 C -0.139 4.139 6 C 0.095 3.905 7 H 0.104 0.896 8 O -0.551 6.551 9 C 0.096 3.904 10 N -0.730 5.730 11 C 0.550 3.450 12 O -0.551 6.551 13 C 0.056 3.944 14 H 0.056 0.944 15 C -0.538 4.538 16 H 0.066 0.934 17 C 0.076 3.924 18 N -0.843 5.843 19 Si 0.886 3.114 20 H -0.279 1.279 21 H -0.287 1.287 22 H -0.272 1.272 23 C -0.013 4.013 24 C -0.066 4.066 25 C -0.148 4.148 26 C -0.146 4.146 27 C -0.145 4.145 28 C -0.100 4.100 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.084 0.916 36 H 0.041 0.959 37 H 0.047 0.953 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.374 0.626 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.399 0.601 44 H 0.263 0.737 45 H 0.128 0.872 46 H 0.101 0.899 47 H 0.099 0.901 48 H 0.100 0.900 49 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.213 10.276 -4.824 12.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.064 4.064 3 C -0.199 4.199 4 C -0.204 4.204 5 C -0.177 4.177 6 C 0.036 3.964 7 H 0.122 0.878 8 O -0.356 6.356 9 C -0.029 4.029 10 N -0.383 5.383 11 C 0.339 3.661 12 O -0.428 6.428 13 C 0.035 3.965 14 H 0.073 0.927 15 C -0.575 4.575 16 H 0.084 0.916 17 C -0.132 4.132 18 N -0.476 5.476 19 Si 0.714 3.286 20 H -0.204 1.204 21 H -0.213 1.213 22 H -0.197 1.197 23 C -0.014 4.014 24 C -0.084 4.084 25 C -0.166 4.166 26 C -0.164 4.164 27 C -0.163 4.163 28 C -0.119 4.119 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.222 0.778 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.233 0.767 44 H 0.073 0.927 45 H 0.145 0.855 46 H 0.119 0.881 47 H 0.118 0.882 48 H 0.119 0.881 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.125 10.582 -4.232 12.120 hybrid contribution 1.275 -0.480 -0.897 1.631 sum -2.850 10.102 -5.128 11.682 Atomic orbital electron populations 1.21978 0.94810 1.02239 1.01288 1.20447 0.95600 0.94795 0.95515 1.21899 1.00868 0.95760 1.01392 1.22073 1.00926 1.01757 0.95619 1.22303 1.00859 0.96458 0.98108 1.22253 0.99564 0.88710 0.85878 0.87788 1.86555 1.27670 1.72951 1.48442 1.21744 0.98759 0.85829 0.96564 1.45670 1.55143 1.15484 1.22032 1.20986 0.79206 0.85751 0.80115 1.90527 1.39461 1.73960 1.38852 1.17880 0.95399 0.90219 0.93046 0.92658 1.20681 0.91840 1.32666 1.12333 0.91591 1.25024 0.97095 0.95309 0.95725 1.70084 1.02405 1.41070 1.34033 0.86676 0.78472 0.80523 0.82979 1.20445 1.21312 1.19683 1.19836 0.94515 0.93337 0.93719 1.21147 0.95089 0.95340 0.96841 1.20986 1.03030 0.99175 0.93387 1.20767 1.03192 0.95294 0.97138 1.20821 1.02893 0.95310 0.97268 1.20969 1.00107 0.98455 0.92329 0.92928 0.92981 0.91781 0.92874 0.92889 0.92909 0.89704 0.93965 0.93370 0.91437 0.91021 0.77820 0.92470 0.92379 0.76666 0.92667 0.85458 0.88066 0.88243 0.88147 0.87548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 7.95 37.16 0.30 -1.08 16 2 C -0.06 -0.61 0.80 -154.51 -0.12 -0.74 16 3 C -0.14 -1.24 8.46 37.15 0.31 -0.92 16 4 C -0.15 -1.49 7.56 37.16 0.28 -1.21 16 5 C -0.14 -1.47 4.07 -26.73 -0.11 -1.58 16 6 C 0.10 1.19 2.71 -26.73 -0.07 1.12 16 7 H 0.10 1.27 5.96 -51.93 -0.31 0.96 16 8 O -0.55 -7.40 9.93 -35.23 -0.35 -7.75 16 9 C 0.10 1.58 5.34 -4.04 -0.02 1.56 16 10 N -0.73 -14.24 5.35 -60.29 -0.32 -14.57 16 11 C 0.55 12.96 5.42 -10.99 -0.06 12.90 16 12 O -0.55 -14.66 13.93 5.56 0.08 -14.59 16 13 C 0.06 1.32 2.78 -94.08 -0.26 1.06 16 14 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 15 C -0.54 -13.16 7.09 -34.44 -0.24 -13.40 16 16 H 0.07 1.58 7.81 -52.49 -0.41 1.17 16 17 C 0.08 1.92 4.03 -17.82 -0.07 1.85 16 18 N -0.84 -22.95 10.91 55.43 0.60 -22.35 16 19 Si 0.89 19.93 29.54 -169.99 -5.02 14.91 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 23 C -0.01 -0.32 4.52 -104.62 -0.47 -0.79 16 24 C -0.07 -1.56 8.25 -39.59 -0.33 -1.89 16 25 C -0.15 -3.13 10.05 -39.59 -0.40 -3.53 16 26 C -0.15 -2.93 10.05 -39.58 -0.40 -3.32 16 27 C -0.14 -3.01 10.05 -39.58 -0.40 -3.41 16 28 C -0.10 -2.31 8.21 -39.59 -0.33 -2.63 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.65 6.19 -51.93 -0.32 0.33 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.98 5.96 -51.93 -0.31 0.67 16 36 H 0.04 0.40 8.12 -51.93 -0.42 -0.02 16 37 H 0.05 0.48 8.10 -51.93 -0.42 0.06 16 38 H 0.07 0.72 8.11 -51.93 -0.42 0.30 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.37 4.58 9.05 45.56 0.41 5.00 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.40 7.39 8.23 -40.82 -0.34 7.06 16 44 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 45 H 0.13 3.10 6.06 -52.48 -0.32 2.78 16 46 H 0.10 1.88 8.06 -52.48 -0.42 1.46 16 47 H 0.10 1.69 8.06 -52.49 -0.42 1.26 16 48 H 0.10 1.81 8.06 -52.49 -0.42 1.38 16 49 H 0.11 2.42 7.01 -52.49 -0.37 2.05 16 LS Contribution 384.67 15.07 5.80 5.80 Total: -1.00 -29.61 384.67 -9.04 -38.65 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: -7.43 Total: 15.90 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: -2.39 Total: -16.00 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: 0.28 Total: -36.91 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -0.27 Total: -22.33 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.61 -9.04 -38.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362158462.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.214 kcal (2) G-P(sol) polarization free energy of solvation -29.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds