Wall clock time and date at job start Tue Mar 31 2020 12:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47217 * 2 1 4 4 C 1.53007 * 109.46786 * 240.00169 * 2 1 3 5 5 C 1.53003 * 109.47328 * 120.00759 * 2 1 3 6 6 C 1.52994 * 109.47304 * 65.77012 * 5 2 1 7 7 H 1.09000 * 109.47250 * 53.99497 * 6 5 2 8 8 O 1.42904 * 109.47301 * 293.99865 * 6 5 2 9 9 C 1.53002 * 109.47203 * 173.99414 * 6 5 2 10 10 N 1.46495 * 109.47062 * 185.00044 * 9 6 5 11 11 C 1.34780 * 119.99871 * 180.02562 * 10 9 6 12 12 O 1.21283 * 120.00094 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00068 * 180.02562 * 11 10 9 14 14 H 1.08995 * 109.47539 * 60.00083 * 13 11 10 15 15 C 1.50705 * 109.47113 * 299.99782 * 13 11 10 16 16 H 1.07990 * 119.99928 * 325.08845 * 15 13 11 17 17 C 1.37877 * 119.99464 * 145.08407 * 15 13 11 18 18 N 1.31508 * 120.00314 * 5.35988 * 17 15 13 19 19 Si 1.86801 * 119.99689 * 185.35359 * 17 15 13 20 20 H 1.48504 * 109.47125 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.46938 * 120.00349 * 19 17 15 22 22 H 1.48494 * 109.47188 * 240.00378 * 19 17 15 23 23 C 1.50703 * 109.46942 * 180.02562 * 13 11 10 24 24 C 1.38237 * 119.99962 * 66.01483 * 23 13 11 25 25 C 1.38234 * 119.99676 * 179.80645 * 24 23 13 26 26 C 1.38232 * 120.00220 * 0.39861 * 25 24 23 27 27 C 1.38232 * 120.00084 * 359.85718 * 26 25 24 28 28 C 1.38235 * 120.00070 * 359.95221 * 27 26 25 29 29 H 1.09007 * 109.46902 * 291.52679 * 1 2 3 30 30 H 1.09000 * 109.47441 * 51.52399 * 1 2 3 31 31 H 1.08997 * 109.47403 * 171.53444 * 1 2 3 32 32 H 1.09001 * 109.46926 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47162 * 300.00207 * 3 2 1 34 34 H 1.09003 * 109.47187 * 60.00769 * 3 2 1 35 35 H 1.08999 * 109.47081 * 300.00594 * 4 2 1 36 36 H 1.09004 * 109.46907 * 60.00261 * 4 2 1 37 37 H 1.09000 * 109.47090 * 179.97438 * 4 2 1 38 38 H 1.08997 * 109.46646 * 305.77427 * 5 2 1 39 39 H 1.08998 * 109.46940 * 185.77153 * 5 2 1 40 40 H 0.96701 * 113.99832 * 299.99782 * 8 6 5 41 41 H 1.09005 * 109.46447 * 65.00354 * 9 6 5 42 42 H 1.08997 * 109.47408 * 305.00397 * 9 6 5 43 43 H 0.96999 * 120.00856 * 359.97438 * 10 9 6 44 44 H 0.97006 * 120.00022 * 179.97438 * 18 17 15 45 45 H 1.08000 * 120.00005 * 359.97438 * 24 23 13 46 46 H 1.08001 * 119.99861 * 180.23245 * 25 24 23 47 47 H 1.08003 * 120.00186 * 179.83226 * 26 25 24 48 48 H 1.08000 * 120.00184 * 179.97438 * 27 26 25 49 49 H 1.08000 * 120.00098 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0401 -0.7214 1.2492 6 6 1.6520 -2.1996 1.1786 7 1 2.0068 -2.6240 0.2394 8 8 0.2300 -2.3228 1.2498 9 6 2.2883 -2.9505 2.3501 10 7 2.0162 -4.3838 2.2170 11 6 2.4822 -5.2468 3.1414 12 8 3.1263 -4.8368 4.0837 13 6 2.2028 -6.7213 3.0042 14 1 2.6249 -7.0855 2.0677 15 6 0.7137 -6.9529 3.0078 16 1 0.0723 -6.3330 3.6165 17 6 0.1703 -7.9563 2.2339 18 7 0.9577 -8.7782 1.5751 19 14 -1.6844 -8.1483 2.1212 20 1 -2.3413 -7.1054 2.9496 21 1 -2.1125 -7.9990 0.7071 22 1 -2.0739 -9.4928 2.6169 23 6 2.8284 -7.4606 4.1589 24 6 2.3610 -7.2581 5.4439 25 6 2.9322 -7.9393 6.5025 26 6 3.9763 -8.8168 6.2771 27 6 4.4472 -9.0153 4.9927 28 6 3.8734 -8.3371 3.9336 29 1 -0.3633 0.3771 0.9560 30 1 -0.3634 0.6394 -0.8045 31 1 -0.3634 -1.0164 -0.1513 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6768 1.9563 0.8901 35 1 1.6765 -1.7489 -1.2494 36 1 1.6766 -0.2073 -2.1393 37 1 3.1299 -0.7209 -1.2496 38 1 1.5948 -0.2708 2.1361 39 1 3.1251 -0.6328 1.3023 40 1 -0.1556 -1.9650 2.0613 41 1 1.8668 -2.5861 3.2870 42 1 3.3654 -2.7832 2.3468 43 1 1.5001 -4.7117 1.4640 44 1 0.5753 -9.4843 1.0309 45 1 1.5477 -6.5698 5.6205 46 1 2.5645 -7.7840 7.5060 47 1 4.4244 -9.3469 7.1045 48 1 5.2632 -9.7005 4.8166 49 1 4.2411 -8.4925 2.9301 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362158465.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:09 Heat of formation + Delta-G solvation = -92.456330 kcal Electronic energy + Delta-G solvation = -27324.027557 eV Core-core repulsion = 23635.787151 eV Total energy + Delta-G solvation = -3688.240406 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.47781 -38.78635 -37.60777 -35.88436 -33.63481 -33.55118 -31.07356 -30.19990 -29.90283 -27.58268 -27.44066 -27.23728 -25.60529 -23.72227 -21.83338 -21.55647 -20.77752 -19.31482 -18.85851 -16.84485 -16.58507 -16.13233 -15.82379 -15.81599 -15.02174 -14.73118 -14.45197 -14.40461 -14.22588 -14.03486 -13.75814 -13.60367 -12.97886 -12.74312 -12.54675 -12.42972 -12.25992 -12.18351 -11.99378 -11.76532 -11.64798 -11.61922 -11.44931 -11.32137 -11.02301 -10.96542 -10.94798 -10.74398 -10.46003 -10.36067 -10.23475 -9.99866 -9.62516 -9.38131 -8.75669 -8.58199 -8.30826 -7.91170 -7.56768 -6.24345 -4.30319 2.41310 2.44120 3.21496 3.30259 3.33980 3.73073 3.94697 4.31519 4.44837 4.56880 4.68842 4.74798 4.88027 5.05692 5.12536 5.13139 5.25967 5.46480 5.47561 5.51361 5.67127 5.68007 5.74016 5.74901 5.80784 5.81830 5.86365 5.92775 5.93559 6.02535 6.10929 6.15163 6.24455 6.31485 6.39849 6.45982 6.53007 6.63840 6.88886 7.00983 7.17833 7.25443 7.40149 7.48249 7.66112 7.68404 7.79467 7.99056 8.10845 8.42938 8.73832 9.27002 9.36176 10.84023 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.012933 B = 0.003568 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.512511 B = 7846.524695 C = 9265.892643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.064 4.064 3 C -0.142 4.142 4 C -0.147 4.147 5 C -0.139 4.139 6 C 0.094 3.906 7 H 0.108 0.892 8 O -0.549 6.549 9 C 0.090 3.910 10 N -0.724 5.724 11 C 0.526 3.474 12 O -0.571 6.571 13 C 0.050 3.950 14 H 0.088 0.912 15 C -0.512 4.512 16 H 0.063 0.937 17 C 0.074 3.926 18 N -0.878 5.878 19 Si 0.898 3.102 20 H -0.271 1.271 21 H -0.281 1.281 22 H -0.283 1.283 23 C -0.007 4.007 24 C -0.086 4.086 25 C -0.135 4.135 26 C -0.150 4.150 27 C -0.132 4.132 28 C -0.118 4.118 29 H 0.047 0.953 30 H 0.042 0.958 31 H 0.086 0.914 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.373 0.627 41 H 0.059 0.941 42 H 0.064 0.936 43 H 0.408 0.592 44 H 0.266 0.734 45 H 0.110 0.890 46 H 0.105 0.895 47 H 0.104 0.896 48 H 0.106 0.894 49 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.717 13.488 -2.963 13.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.064 4.064 3 C -0.199 4.199 4 C -0.205 4.205 5 C -0.177 4.177 6 C 0.034 3.966 7 H 0.126 0.874 8 O -0.354 6.354 9 C -0.035 4.035 10 N -0.377 5.377 11 C 0.316 3.684 12 O -0.450 6.450 13 C 0.029 3.971 14 H 0.105 0.895 15 C -0.549 4.549 16 H 0.081 0.919 17 C -0.131 4.131 18 N -0.514 5.514 19 Si 0.725 3.275 20 H -0.195 1.195 21 H -0.207 1.207 22 H -0.209 1.209 23 C -0.009 4.009 24 C -0.104 4.104 25 C -0.153 4.153 26 C -0.168 4.168 27 C -0.150 4.150 28 C -0.137 4.137 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.104 0.896 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.220 0.780 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.244 0.756 44 H 0.075 0.925 45 H 0.128 0.872 46 H 0.124 0.876 47 H 0.122 0.878 48 H 0.124 0.876 49 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.264 13.348 -3.009 13.869 hybrid contribution -1.239 -0.107 0.172 1.255 sum 1.025 13.242 -2.837 13.581 Atomic orbital electron populations 1.22099 0.94010 1.03791 1.00630 1.20449 0.96369 0.94715 0.94828 1.21900 1.00751 0.95782 1.01496 1.21989 1.00666 1.00938 0.96857 1.22298 1.01742 0.95484 0.98163 1.22277 0.81502 0.93804 0.98971 0.87438 1.86611 1.19363 1.84911 1.44543 1.21890 1.00303 0.83049 0.98234 1.45821 1.57410 1.05276 1.29191 1.21666 0.76113 0.90198 0.80451 1.90575 1.41218 1.80646 1.32591 1.18116 0.97832 0.85627 0.95496 0.89467 1.20703 0.88978 1.17655 1.27591 0.91922 1.24963 0.98492 0.94961 0.94687 1.69931 1.34977 1.16782 1.29699 0.86428 0.84842 0.78184 0.78012 1.19500 1.20685 1.20922 1.20026 0.91451 0.94561 0.94813 1.20812 0.98855 0.98355 0.92347 1.20944 0.97721 0.98408 0.98232 1.20784 0.98882 1.00759 0.96366 1.20895 1.00393 1.00533 0.93202 1.20984 0.96636 0.97865 0.98168 0.93398 0.93888 0.89556 0.92883 0.92836 0.92876 0.91730 0.92897 0.92879 0.91388 0.90906 0.77986 0.92223 0.91768 0.75603 0.92460 0.87205 0.87650 0.87759 0.87600 0.87053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 7.57 37.16 0.28 -1.09 16 2 C -0.06 -0.56 0.80 -154.51 -0.12 -0.69 16 3 C -0.14 -1.13 8.46 37.16 0.31 -0.82 16 4 C -0.15 -1.34 7.96 37.16 0.30 -1.05 16 5 C -0.14 -1.28 4.07 -26.73 -0.11 -1.39 16 6 C 0.09 1.06 2.65 -26.73 -0.07 0.99 16 7 H 0.11 1.25 5.99 -51.93 -0.31 0.94 16 8 O -0.55 -6.50 10.07 -35.23 -0.35 -6.86 16 9 C 0.09 1.31 5.31 -4.04 -0.02 1.29 16 10 N -0.72 -13.21 5.40 -60.29 -0.33 -13.54 16 11 C 0.53 11.72 7.04 -10.98 -0.08 11.64 16 12 O -0.57 -13.93 15.42 5.55 0.09 -13.84 16 13 C 0.05 1.21 2.37 -94.07 -0.22 0.98 16 14 H 0.09 2.21 7.14 -51.93 -0.37 1.84 16 15 C -0.51 -12.89 7.46 -34.44 -0.26 -13.15 16 16 H 0.06 1.61 7.82 -52.49 -0.41 1.20 16 17 C 0.07 1.88 5.45 -17.82 -0.10 1.79 16 18 N -0.88 -23.36 12.84 55.43 0.71 -22.65 16 19 Si 0.90 20.17 29.54 -169.99 -5.02 15.15 16 20 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 C -0.01 -0.18 4.30 -104.62 -0.45 -0.63 16 24 C -0.09 -1.96 8.31 -39.58 -0.33 -2.29 16 25 C -0.13 -2.72 10.05 -39.59 -0.40 -3.12 16 26 C -0.15 -2.85 10.05 -39.59 -0.40 -3.25 16 27 C -0.13 -2.61 10.05 -39.58 -0.40 -3.01 16 28 C -0.12 -2.64 9.67 -39.58 -0.38 -3.02 16 29 H 0.05 0.42 8.11 -51.93 -0.42 0.00 16 30 H 0.04 0.38 8.13 -51.93 -0.42 -0.04 16 31 H 0.09 0.92 5.89 -51.93 -0.31 0.62 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.65 6.20 -51.93 -0.32 0.32 16 36 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.37 3.57 9.05 45.56 0.41 3.98 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.41 7.39 8.36 -40.82 -0.34 7.05 16 44 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 45 H 0.11 2.55 7.89 -52.49 -0.41 2.13 16 46 H 0.11 1.82 8.06 -52.49 -0.42 1.39 16 47 H 0.10 1.64 8.06 -52.48 -0.42 1.22 16 48 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 49 H 0.11 2.39 7.96 -52.49 -0.42 1.97 16 LS Contribution 394.43 15.07 5.94 5.94 Total: -1.00 -29.39 394.43 -8.93 -38.32 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: -7.53 Total: 14.28 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: -2.44 Total: -16.81 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: 0.39 Total: -36.19 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.27 Total: -20.70 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -29.39 -8.93 -38.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362158465.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.134 kcal (2) G-P(sol) polarization free energy of solvation -29.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds