Wall clock time and date at job start Tue Mar 31 2020 12:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47217 * 2 1 4 4 C 1.53007 * 109.46786 * 240.00169 * 2 1 3 5 5 C 1.53003 * 109.47328 * 120.00759 * 2 1 3 6 6 C 1.52994 * 109.47304 * 65.77012 * 5 2 1 7 7 H 1.09000 * 109.47250 * 53.99497 * 6 5 2 8 8 O 1.42904 * 109.47301 * 293.99865 * 6 5 2 9 9 C 1.53002 * 109.47203 * 173.99414 * 6 5 2 10 10 N 1.46495 * 109.47062 * 185.00044 * 9 6 5 11 11 C 1.34780 * 119.99871 * 180.02562 * 10 9 6 12 12 O 1.21283 * 120.00094 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00068 * 180.02562 * 11 10 9 14 14 H 1.08995 * 109.47539 * 60.00083 * 13 11 10 15 15 C 1.50705 * 109.47113 * 299.99782 * 13 11 10 16 16 H 1.07990 * 119.99928 * 325.08845 * 15 13 11 17 17 C 1.37877 * 119.99464 * 145.08407 * 15 13 11 18 18 N 1.31508 * 120.00314 * 5.35988 * 17 15 13 19 19 Si 1.86801 * 119.99689 * 185.35359 * 17 15 13 20 20 H 1.48504 * 109.47125 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.46938 * 120.00349 * 19 17 15 22 22 H 1.48494 * 109.47188 * 240.00378 * 19 17 15 23 23 C 1.50703 * 109.46942 * 180.02562 * 13 11 10 24 24 C 1.38237 * 119.99962 * 66.01483 * 23 13 11 25 25 C 1.38234 * 119.99676 * 179.80645 * 24 23 13 26 26 C 1.38232 * 120.00220 * 0.39861 * 25 24 23 27 27 C 1.38232 * 120.00084 * 359.85718 * 26 25 24 28 28 C 1.38235 * 120.00070 * 359.95221 * 27 26 25 29 29 H 1.09007 * 109.46902 * 291.52679 * 1 2 3 30 30 H 1.09000 * 109.47441 * 51.52399 * 1 2 3 31 31 H 1.08997 * 109.47403 * 171.53444 * 1 2 3 32 32 H 1.09001 * 109.46926 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47162 * 300.00207 * 3 2 1 34 34 H 1.09003 * 109.47187 * 60.00769 * 3 2 1 35 35 H 1.08999 * 109.47081 * 300.00594 * 4 2 1 36 36 H 1.09004 * 109.46907 * 60.00261 * 4 2 1 37 37 H 1.09000 * 109.47090 * 179.97438 * 4 2 1 38 38 H 1.08997 * 109.46646 * 305.77427 * 5 2 1 39 39 H 1.08998 * 109.46940 * 185.77153 * 5 2 1 40 40 H 0.96701 * 113.99832 * 299.99782 * 8 6 5 41 41 H 1.09005 * 109.46447 * 65.00354 * 9 6 5 42 42 H 1.08997 * 109.47408 * 305.00397 * 9 6 5 43 43 H 0.96999 * 120.00856 * 359.97438 * 10 9 6 44 44 H 0.97006 * 120.00022 * 179.97438 * 18 17 15 45 45 H 1.08000 * 120.00005 * 359.97438 * 24 23 13 46 46 H 1.08001 * 119.99861 * 180.23245 * 25 24 23 47 47 H 1.08003 * 120.00186 * 179.83226 * 26 25 24 48 48 H 1.08000 * 120.00184 * 179.97438 * 27 26 25 49 49 H 1.08000 * 120.00098 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0401 -0.7214 1.2492 6 6 1.6520 -2.1996 1.1786 7 1 2.0068 -2.6240 0.2394 8 8 0.2300 -2.3228 1.2498 9 6 2.2883 -2.9505 2.3501 10 7 2.0162 -4.3838 2.2170 11 6 2.4822 -5.2468 3.1414 12 8 3.1263 -4.8368 4.0837 13 6 2.2028 -6.7213 3.0042 14 1 2.6249 -7.0855 2.0677 15 6 0.7137 -6.9529 3.0078 16 1 0.0723 -6.3330 3.6165 17 6 0.1703 -7.9563 2.2339 18 7 0.9577 -8.7782 1.5751 19 14 -1.6844 -8.1483 2.1212 20 1 -2.3413 -7.1054 2.9496 21 1 -2.1125 -7.9990 0.7071 22 1 -2.0739 -9.4928 2.6169 23 6 2.8284 -7.4606 4.1589 24 6 2.3610 -7.2581 5.4439 25 6 2.9322 -7.9393 6.5025 26 6 3.9763 -8.8168 6.2771 27 6 4.4472 -9.0153 4.9927 28 6 3.8734 -8.3371 3.9336 29 1 -0.3633 0.3771 0.9560 30 1 -0.3634 0.6394 -0.8045 31 1 -0.3634 -1.0164 -0.1513 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6768 1.9563 0.8901 35 1 1.6765 -1.7489 -1.2494 36 1 1.6766 -0.2073 -2.1393 37 1 3.1299 -0.7209 -1.2496 38 1 1.5948 -0.2708 2.1361 39 1 3.1251 -0.6328 1.3023 40 1 -0.1556 -1.9650 2.0613 41 1 1.8668 -2.5861 3.2870 42 1 3.3654 -2.7832 2.3468 43 1 1.5001 -4.7117 1.4640 44 1 0.5753 -9.4843 1.0309 45 1 1.5477 -6.5698 5.6205 46 1 2.5645 -7.7840 7.5060 47 1 4.4244 -9.3469 7.1045 48 1 5.2632 -9.7005 4.8166 49 1 4.2411 -8.4925 2.9301 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362158465.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:08 Heat of formation + Delta-G solvation = -109.799916 kcal Electronic energy + Delta-G solvation = -27324.779631 eV Core-core repulsion = 23635.787151 eV Total energy + Delta-G solvation = -3688.992480 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.93445 -39.98823 -39.16536 -36.82402 -35.50820 -35.00160 -32.88731 -31.53383 -31.29808 -29.18584 -28.16291 -27.94757 -26.91691 -25.48996 -23.21841 -22.89289 -22.34864 -20.91390 -19.72757 -18.68570 -18.01323 -17.55429 -17.15407 -17.12285 -16.46045 -16.15719 -15.84468 -15.67562 -15.41326 -15.23496 -15.09109 -14.83896 -14.41131 -14.12201 -13.93672 -13.90943 -13.52216 -13.37735 -13.25761 -13.03335 -12.89701 -12.82547 -12.74615 -12.53745 -12.37788 -12.18880 -12.10468 -11.93560 -11.76798 -11.67079 -11.45449 -11.29112 -11.25328 -10.69951 -10.64405 -10.32231 -9.87483 -9.55656 -9.25043 -8.20584 -6.31812 0.75895 0.80997 1.41754 1.45061 1.55245 1.95601 2.43521 2.52830 3.08822 3.27143 3.51189 3.65935 3.90192 3.99560 4.14599 4.18777 4.22933 4.30237 4.39170 4.43714 4.49209 4.55348 4.61628 4.73208 4.79478 4.84306 4.88565 4.89537 4.97934 4.98663 5.01198 5.10618 5.14806 5.17513 5.19947 5.34951 5.37294 5.44600 5.45489 5.56216 5.65555 5.69325 5.71392 5.78598 5.83536 5.95773 6.24165 6.41024 6.71682 6.78904 6.85422 7.35365 7.55748 8.87735 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.012933 B = 0.003568 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.512511 B = 7846.524695 C = 9265.892643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.062 4.062 3 C -0.139 4.139 4 C -0.148 4.148 5 C -0.132 4.132 6 C 0.107 3.893 7 H 0.105 0.895 8 O -0.559 6.559 9 C 0.089 3.911 10 N -0.713 5.713 11 C 0.524 3.476 12 O -0.595 6.595 13 C 0.051 3.949 14 H 0.064 0.936 15 C -0.513 4.513 16 H 0.052 0.948 17 C 0.034 3.966 18 N -0.906 5.906 19 Si 0.955 3.045 20 H -0.269 1.269 21 H -0.274 1.274 22 H -0.286 1.286 23 C -0.036 4.036 24 C -0.112 4.112 25 C -0.135 4.135 26 C -0.144 4.144 27 C -0.129 4.129 28 C -0.143 4.143 29 H 0.052 0.948 30 H 0.045 0.955 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.051 0.949 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.383 0.617 41 H 0.057 0.943 42 H 0.064 0.936 43 H 0.409 0.591 44 H 0.267 0.733 45 H 0.094 0.906 46 H 0.136 0.864 47 H 0.147 0.853 48 H 0.140 0.860 49 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.808 14.036 -2.184 14.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.062 4.062 3 C -0.197 4.197 4 C -0.205 4.205 5 C -0.170 4.170 6 C 0.048 3.952 7 H 0.122 0.878 8 O -0.366 6.366 9 C -0.035 4.035 10 N -0.364 5.364 11 C 0.313 3.687 12 O -0.477 6.477 13 C 0.030 3.970 14 H 0.082 0.918 15 C -0.550 4.550 16 H 0.070 0.930 17 C -0.168 4.168 18 N -0.543 5.543 19 Si 0.781 3.219 20 H -0.193 1.193 21 H -0.199 1.199 22 H -0.212 1.212 23 C -0.037 4.037 24 C -0.130 4.130 25 C -0.153 4.153 26 C -0.162 4.162 27 C -0.147 4.147 28 C -0.162 4.162 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.232 0.768 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.245 0.755 44 H 0.076 0.924 45 H 0.112 0.888 46 H 0.154 0.846 47 H 0.165 0.835 48 H 0.158 0.842 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.341 13.928 -2.248 14.301 hybrid contribution -1.215 -0.270 -0.034 1.246 sum 1.125 13.658 -2.283 13.893 Atomic orbital electron populations 1.22050 0.94245 1.02869 1.01056 1.20440 0.96123 0.95349 0.94297 1.21868 1.00994 0.94862 1.01941 1.21992 1.00962 1.00274 0.97291 1.22243 1.02179 0.93663 0.98906 1.22160 0.81118 0.94787 0.97142 0.87755 1.86605 1.19487 1.85213 1.45304 1.22133 1.00702 0.80869 0.99751 1.45767 1.56039 1.06692 1.27925 1.21399 0.76306 0.90131 0.80856 1.90540 1.42572 1.80897 1.33732 1.18011 0.97171 0.86973 0.94823 0.91798 1.20746 0.89641 1.17404 1.27232 0.92986 1.25587 1.02032 0.94689 0.94487 1.70027 1.36416 1.17347 1.30493 0.85543 0.80457 0.77732 0.78180 1.19291 1.19901 1.21189 1.20128 0.92814 0.95647 0.95146 1.20845 0.99519 0.99561 0.93087 1.21327 0.97557 0.97609 0.98812 1.21271 0.97840 0.99795 0.97279 1.21305 1.00606 0.99978 0.92842 1.21140 0.97193 0.98757 0.99069 0.92862 0.93566 0.91108 0.92502 0.92415 0.92447 0.92980 0.92428 0.92431 0.90502 0.90341 0.76836 0.92418 0.91741 0.75544 0.92425 0.88758 0.84620 0.83482 0.84232 0.87590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 7.57 71.98 0.54 -1.95 16 2 C -0.06 -1.01 0.80 -52.18 -0.04 -1.05 16 3 C -0.14 -1.93 8.46 71.98 0.61 -1.32 16 4 C -0.15 -2.54 7.96 71.98 0.57 -1.97 16 5 C -0.13 -2.25 4.07 30.59 0.12 -2.13 16 6 C 0.11 2.36 2.65 30.59 0.08 2.44 16 7 H 0.10 2.41 5.99 -2.39 -0.01 2.39 16 8 O -0.56 -12.95 10.07 -148.98 -1.50 -14.45 16 9 C 0.09 2.60 5.31 86.38 0.46 3.06 16 10 N -0.71 -26.72 5.40 -463.06 -2.50 -29.22 16 11 C 0.52 24.19 7.04 87.66 0.62 24.81 16 12 O -0.60 -29.89 15.42 -3.04 -0.05 -29.93 16 13 C 0.05 2.57 2.37 -13.03 -0.03 2.54 16 14 H 0.06 3.43 7.14 -2.39 -0.02 3.41 16 15 C -0.51 -26.62 7.46 25.60 0.19 -26.43 16 16 H 0.05 2.75 7.82 -2.92 -0.02 2.73 16 17 C 0.03 1.76 5.45 84.66 0.46 2.22 16 18 N -0.91 -49.32 12.84 21.45 0.28 -49.05 16 19 Si 0.96 41.78 29.54 68.60 2.03 43.81 16 20 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 21 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 22 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 23 C -0.04 -1.79 4.30 -19.86 -0.09 -1.87 16 24 C -0.11 -5.21 8.31 22.27 0.18 -5.02 16 25 C -0.14 -5.23 10.05 22.27 0.22 -5.00 16 26 C -0.14 -5.04 10.05 22.27 0.22 -4.82 16 27 C -0.13 -4.87 10.05 22.27 0.22 -4.65 16 28 C -0.14 -6.48 9.67 22.27 0.22 -6.27 16 29 H 0.05 0.84 8.11 -2.38 -0.02 0.82 16 30 H 0.05 0.75 8.13 -2.39 -0.02 0.73 16 31 H 0.07 1.46 5.89 -2.39 -0.01 1.44 16 32 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.05 1.02 6.20 -2.39 -0.01 1.00 16 36 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.08 1.20 8.12 -2.39 -0.02 1.18 16 39 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.38 7.03 9.05 -74.06 -0.67 6.36 16 41 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 42 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.41 15.24 8.36 -92.71 -0.77 14.47 16 44 H 0.27 13.80 8.31 -92.70 -0.77 13.03 16 45 H 0.09 4.54 7.89 -2.91 -0.02 4.52 16 46 H 0.14 4.31 8.06 -2.91 -0.02 4.29 16 47 H 0.15 3.90 8.06 -2.91 -0.02 3.87 16 48 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 49 H 0.11 4.74 7.96 -2.91 -0.02 4.71 16 Total: -1.00 -64.12 394.43 2.32 -61.80 By element: Atomic # 1 Polarization: 44.96 SS G_CDS: -0.51 Total: 44.45 kcal Atomic # 6 Polarization: -31.98 SS G_CDS: 4.57 Total: -27.40 kcal Atomic # 7 Polarization: -76.04 SS G_CDS: -2.23 Total: -78.27 kcal Atomic # 8 Polarization: -42.84 SS G_CDS: -1.55 Total: -44.39 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -64.12 2.32 -61.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362158465.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.004 kcal (2) G-P(sol) polarization free energy of solvation -64.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds