Wall clock time and date at job start Tue Mar 31 2020 12:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47032 * 2 1 4 4 O 1.42905 * 109.47020 * 59.00703 * 3 2 1 5 5 C 1.53001 * 109.47101 * 179.00808 * 3 2 1 6 6 C 1.52998 * 109.47182 * 305.00085 * 5 3 2 7 7 C 1.53000 * 109.46959 * 299.00761 * 3 2 1 8 8 C 1.53003 * 109.46692 * 178.65342 * 7 3 2 9 9 N 1.46502 * 109.46813 * 175.64118 * 8 7 3 10 10 C 1.34779 * 120.00068 * 180.02562 * 9 8 7 11 11 O 1.21284 * 119.99733 * 359.97438 * 10 9 8 12 12 C 1.50697 * 120.00198 * 180.02562 * 10 9 8 13 13 H 1.09003 * 109.47053 * 299.99747 * 12 10 9 14 14 C 1.50699 * 109.47354 * 59.99416 * 12 10 9 15 15 H 1.07997 * 120.00053 * 235.09660 * 14 12 10 16 16 C 1.37881 * 119.99695 * 55.09773 * 14 12 10 17 17 N 1.31509 * 120.00082 * 2.18462 * 16 14 12 18 18 Si 1.86796 * 119.99757 * 182.18151 * 16 14 12 19 19 H 1.48505 * 109.47301 * 90.00167 * 18 16 14 20 20 H 1.48506 * 109.47101 * 210.00155 * 18 16 14 21 21 H 1.48496 * 109.47647 * 330.00283 * 18 16 14 22 22 C 1.50697 * 109.47183 * 179.97438 * 12 10 9 23 23 C 1.38235 * 119.99997 * 46.85760 * 22 12 10 24 24 C 1.38238 * 119.99862 * 179.97438 * 23 22 12 25 25 C 1.38239 * 119.99895 * 359.96340 * 24 23 22 26 26 C 1.38231 * 120.00410 * 359.97438 * 25 24 23 27 27 C 1.38235 * 119.99881 * 226.83995 * 22 12 10 28 28 H 1.08996 * 109.46855 * 65.58674 * 1 2 3 29 29 H 1.09001 * 109.46801 * 185.58026 * 1 2 3 30 30 H 1.08999 * 109.47075 * 305.58800 * 1 2 3 31 31 H 1.09003 * 109.46981 * 240.00100 * 2 1 3 32 32 H 1.08999 * 109.46997 * 119.99943 * 2 1 3 33 33 H 0.96701 * 113.99378 * 179.97438 * 4 3 2 34 34 H 1.09001 * 109.46948 * 64.99769 * 5 3 2 35 35 H 1.09002 * 109.47058 * 185.00042 * 5 3 2 36 36 H 1.09002 * 109.47159 * 60.00020 * 6 5 3 37 37 H 1.08994 * 109.47226 * 180.02562 * 6 5 3 38 38 H 1.09004 * 109.47127 * 300.00195 * 6 5 3 39 39 H 1.09001 * 109.47146 * 58.65734 * 7 3 2 40 40 H 1.08994 * 109.47107 * 298.65279 * 7 3 2 41 41 H 1.08997 * 109.47342 * 55.64767 * 8 7 3 42 42 H 1.08994 * 109.47260 * 295.64498 * 8 7 3 43 43 H 0.96999 * 120.00271 * 0.02562 * 9 8 7 44 44 H 0.96998 * 119.99905 * 179.97438 * 17 16 14 45 45 H 1.07991 * 120.00285 * 359.97438 * 23 22 12 46 46 H 1.07992 * 120.00092 * 179.97438 * 24 23 22 47 47 H 1.08006 * 119.99727 * 179.71774 * 25 24 23 48 48 H 1.08000 * 120.00612 * 179.97438 * 26 25 24 49 49 H 1.07999 * 120.00247 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.5447 2.1229 1.1550 5 6 3.5698 1.4426 0.0250 6 6 4.0605 0.6221 1.2195 7 6 1.5505 2.1565 -1.2616 8 6 2.0324 3.6085 -1.2452 9 7 1.6531 4.2630 -2.4998 10 6 1.9758 5.5545 -2.7105 11 8 2.5798 6.1750 -1.8613 12 6 1.5853 6.2280 -4.0008 13 1 2.0436 5.7020 -4.8384 14 6 0.0859 6.1985 -4.1491 15 1 -0.3608 5.7729 -5.0355 16 6 -0.7156 6.7148 -3.1531 17 7 -0.1712 7.2717 -2.0934 18 14 -2.5748 6.6233 -3.3089 19 1 -3.0609 5.3583 -2.7016 20 1 -3.1880 7.7781 -2.6047 21 1 -2.9538 6.6608 -4.7442 22 6 2.0600 7.6581 -3.9848 23 6 3.3512 7.9534 -3.5893 24 6 3.7868 9.2653 -3.5751 25 6 2.9313 10.2818 -3.9572 26 6 1.6406 9.9864 -4.3540 27 6 1.2043 8.6747 -4.3660 28 1 -0.3633 0.4247 -0.9358 29 1 -0.3633 -1.0228 0.0999 30 1 -0.3633 0.5980 0.8357 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.8293 3.0447 1.2206 34 1 3.9483 1.0029 -0.8978 35 1 3.9317 2.4669 0.1146 36 1 3.6986 -0.4022 1.1299 37 1 5.1502 0.6225 1.2375 38 1 3.6819 1.0617 2.1423 39 1 0.4611 2.1355 -1.2913 40 1 1.9479 1.6517 -2.1420 41 1 3.1168 3.6303 -1.1374 42 1 1.5735 4.1342 -0.4079 43 1 1.1698 3.7669 -3.1789 44 1 -0.7350 7.6353 -1.3929 45 1 4.0196 7.1593 -3.2913 46 1 4.7953 9.4960 -3.2657 47 1 3.2703 11.3071 -3.9417 48 1 0.9721 10.7806 -4.6521 49 1 0.1957 8.4439 -4.6757 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362360642.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:34 Heat of formation + Delta-G solvation = -83.945020 kcal Electronic energy + Delta-G solvation = -27857.873251 eV Core-core repulsion = 24170.001924 eV Total energy + Delta-G solvation = -3687.871328 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.42764 -38.75348 -37.32787 -34.05237 -33.59352 -33.48414 -31.86988 -30.82763 -29.94175 -29.65391 -27.28726 -25.50824 -23.89155 -22.98235 -22.40045 -21.24408 -20.46545 -19.82524 -19.15452 -16.87604 -16.30121 -16.01731 -15.33476 -15.27163 -15.19359 -14.68981 -14.67393 -14.45722 -14.02355 -13.70193 -13.66971 -13.56569 -13.11108 -12.56848 -12.39100 -12.21479 -12.15572 -12.02093 -11.92497 -11.87510 -11.63922 -11.47966 -11.29096 -11.06385 -10.97863 -10.92218 -10.78273 -10.67948 -10.42852 -10.19015 -10.03371 -9.77307 -9.65401 -9.35841 -8.71218 -8.29099 -7.97440 -7.67365 -7.38192 -6.13222 -4.29649 2.56401 2.62952 3.19542 3.29458 3.29779 4.08083 4.21487 4.28840 4.40235 4.68961 4.71407 4.94089 5.06498 5.13398 5.14956 5.25609 5.38143 5.42164 5.48152 5.56394 5.71265 5.78386 5.81593 5.86599 5.87023 5.97562 5.99136 6.06608 6.09817 6.12396 6.24814 6.28517 6.32888 6.42051 6.43857 6.60336 6.69348 6.82292 6.91955 7.15073 7.23129 7.52445 7.57791 7.66237 7.69219 7.73574 7.81000 8.17980 8.28984 8.61762 8.81756 9.37106 9.70771 10.87167 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014004 B = 0.003921 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.975656 B = 7140.067827 C = 8598.288783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.109 4.109 3 C 0.140 3.860 4 O -0.558 6.558 5 C -0.153 4.153 6 C -0.150 4.150 7 C -0.159 4.159 8 C 0.124 3.876 9 N -0.736 5.736 10 C 0.550 3.450 11 O -0.549 6.549 12 C 0.056 3.944 13 H 0.056 0.944 14 C -0.541 4.541 15 H 0.066 0.934 16 C 0.075 3.925 17 N -0.841 5.841 18 Si 0.885 3.115 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.271 1.271 22 C -0.014 4.014 23 C -0.100 4.100 24 C -0.145 4.145 25 C -0.145 4.145 26 C -0.148 4.148 27 C -0.065 4.065 28 H 0.055 0.945 29 H 0.048 0.952 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.378 0.622 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.055 0.945 37 H 0.049 0.951 38 H 0.059 0.941 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.395 0.605 44 H 0.264 0.736 45 H 0.107 0.893 46 H 0.100 0.900 47 H 0.100 0.900 48 H 0.101 0.899 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.812 -10.720 1.146 11.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.146 4.146 3 C 0.099 3.901 4 O -0.365 6.365 5 C -0.191 4.191 6 C -0.207 4.207 7 C -0.197 4.197 8 C -0.001 4.001 9 N -0.389 5.389 10 C 0.339 3.661 11 O -0.425 6.425 12 C 0.034 3.966 13 H 0.074 0.926 14 C -0.579 4.579 15 H 0.084 0.916 16 C -0.133 4.133 17 N -0.474 5.474 18 Si 0.713 3.287 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.196 1.196 22 C -0.015 4.015 23 C -0.118 4.118 24 C -0.163 4.163 25 C -0.163 4.163 26 C -0.166 4.166 27 C -0.083 4.083 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.227 0.773 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.228 0.772 44 H 0.075 0.925 45 H 0.125 0.875 46 H 0.119 0.881 47 H 0.118 0.882 48 H 0.119 0.881 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.947 -10.725 2.083 11.993 hybrid contribution -1.166 0.443 -0.147 1.255 sum 3.782 -10.282 1.935 11.125 Atomic orbital electron populations 1.21762 0.95335 1.01143 1.02692 1.21551 0.96770 0.94041 1.02280 1.21111 0.91733 0.92437 0.84815 1.86472 1.76318 1.29029 1.44713 1.22279 0.95904 1.01530 0.99405 1.21770 1.00246 1.00038 0.98630 1.22528 1.02744 0.95907 0.98482 1.21091 0.98909 0.91094 0.88986 1.45767 1.61461 1.13041 1.18586 1.21006 0.75400 0.79596 0.90063 1.90531 1.41788 1.63292 1.46917 1.17884 0.97525 0.89847 0.91297 0.92626 1.20686 0.88427 1.43267 1.05481 0.91562 1.25042 0.98543 0.94378 0.95323 1.70069 1.35037 1.34530 1.07725 0.86690 0.85794 0.77831 0.78430 1.20564 1.21129 1.19612 1.19818 0.91432 0.96314 0.93897 1.20971 0.96523 0.95600 0.98733 1.20821 0.98760 0.93561 1.03161 1.20770 0.94830 0.97663 1.03063 1.20991 0.95677 0.96742 1.03220 1.21145 0.99603 0.90974 0.96614 0.92563 0.93291 0.91671 0.91061 0.91088 0.77329 0.91187 0.91065 0.92595 0.93146 0.92160 0.90235 0.90805 0.92733 0.92592 0.77151 0.92528 0.87533 0.88135 0.88232 0.88058 0.85472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.35 37.16 0.35 -1.29 16 2 C -0.11 -1.12 4.74 -26.73 -0.13 -1.24 16 3 C 0.14 1.60 0.52 -90.62 -0.05 1.55 16 4 O -0.56 -7.23 11.65 -35.23 -0.41 -7.64 16 5 C -0.15 -1.61 4.74 -26.73 -0.13 -1.74 16 6 C -0.15 -1.43 9.32 37.16 0.35 -1.09 16 7 C -0.16 -2.01 4.30 -26.73 -0.11 -2.13 16 8 C 0.12 2.01 5.01 -4.04 -0.02 1.99 16 9 N -0.74 -14.07 5.46 -60.29 -0.33 -14.40 16 10 C 0.55 12.77 5.44 -10.99 -0.06 12.71 16 11 O -0.55 -14.39 13.92 5.55 0.08 -14.31 16 12 C 0.06 1.30 2.78 -94.08 -0.26 1.04 16 13 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 14 C -0.54 -13.05 7.10 -34.44 -0.24 -13.30 16 15 H 0.07 1.55 7.81 -52.49 -0.41 1.14 16 16 C 0.08 1.89 4.02 -17.82 -0.07 1.81 16 17 N -0.84 -22.86 10.90 55.43 0.60 -22.25 16 18 Si 0.89 19.79 29.54 -169.99 -5.02 14.77 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 22 C -0.01 -0.32 4.52 -104.63 -0.47 -0.80 16 23 C -0.10 -2.27 8.21 -39.58 -0.32 -2.60 16 24 C -0.14 -2.99 10.05 -39.58 -0.40 -3.39 16 25 C -0.15 -2.89 10.05 -39.58 -0.40 -3.29 16 26 C -0.15 -3.11 10.05 -39.58 -0.40 -3.51 16 27 C -0.07 -1.53 8.22 -39.58 -0.33 -1.86 16 28 H 0.06 0.62 6.73 -51.93 -0.35 0.27 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.80 7.49 -51.93 -0.39 0.41 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.71 6.29 -51.93 -0.33 0.38 16 33 H 0.38 4.54 7.39 45.56 0.34 4.88 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.81 6.63 -51.93 -0.34 0.47 16 36 H 0.06 0.49 6.32 -51.93 -0.33 0.16 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.62 7.82 -51.93 -0.41 0.21 16 39 H 0.08 1.09 6.51 -51.93 -0.34 0.75 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.05 0.88 6.36 -51.93 -0.33 0.55 16 42 H 0.06 1.02 6.99 -51.93 -0.36 0.66 16 43 H 0.40 6.90 8.36 -40.82 -0.34 6.56 16 44 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 45 H 0.11 2.39 6.98 -52.49 -0.37 2.03 16 46 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 47 H 0.10 1.68 8.06 -52.48 -0.42 1.25 16 48 H 0.10 1.87 8.06 -52.49 -0.42 1.44 16 49 H 0.13 3.07 6.05 -52.49 -0.32 2.75 16 LS Contribution 380.28 15.07 5.73 5.73 Total: -1.00 -29.71 380.28 -9.26 -38.97 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: -7.21 Total: 16.25 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: -2.70 Total: -17.12 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: 0.28 Total: -36.66 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.33 Total: -21.94 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.71 -9.26 -38.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362360642.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.975 kcal (2) G-P(sol) polarization free energy of solvation -29.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds