Wall clock time and date at job start Tue Mar 31 2020 12:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47032 * 2 1 4 4 O 1.42905 * 109.47020 * 59.00703 * 3 2 1 5 5 C 1.53001 * 109.47101 * 179.00808 * 3 2 1 6 6 C 1.52998 * 109.47182 * 305.00085 * 5 3 2 7 7 C 1.53000 * 109.46959 * 299.00761 * 3 2 1 8 8 C 1.53003 * 109.46692 * 178.65342 * 7 3 2 9 9 N 1.46502 * 109.46813 * 175.64118 * 8 7 3 10 10 C 1.34779 * 120.00068 * 180.02562 * 9 8 7 11 11 O 1.21284 * 119.99733 * 359.97438 * 10 9 8 12 12 C 1.50697 * 120.00198 * 180.02562 * 10 9 8 13 13 H 1.09003 * 109.47053 * 299.99747 * 12 10 9 14 14 C 1.50699 * 109.47354 * 59.99416 * 12 10 9 15 15 H 1.07997 * 120.00053 * 235.09660 * 14 12 10 16 16 C 1.37881 * 119.99695 * 55.09773 * 14 12 10 17 17 N 1.31509 * 120.00082 * 2.18462 * 16 14 12 18 18 Si 1.86796 * 119.99757 * 182.18151 * 16 14 12 19 19 H 1.48505 * 109.47301 * 90.00167 * 18 16 14 20 20 H 1.48506 * 109.47101 * 210.00155 * 18 16 14 21 21 H 1.48496 * 109.47647 * 330.00283 * 18 16 14 22 22 C 1.50697 * 109.47183 * 179.97438 * 12 10 9 23 23 C 1.38235 * 119.99997 * 46.85760 * 22 12 10 24 24 C 1.38238 * 119.99862 * 179.97438 * 23 22 12 25 25 C 1.38239 * 119.99895 * 359.96340 * 24 23 22 26 26 C 1.38231 * 120.00410 * 359.97438 * 25 24 23 27 27 C 1.38235 * 119.99881 * 226.83995 * 22 12 10 28 28 H 1.08996 * 109.46855 * 65.58674 * 1 2 3 29 29 H 1.09001 * 109.46801 * 185.58026 * 1 2 3 30 30 H 1.08999 * 109.47075 * 305.58800 * 1 2 3 31 31 H 1.09003 * 109.46981 * 240.00100 * 2 1 3 32 32 H 1.08999 * 109.46997 * 119.99943 * 2 1 3 33 33 H 0.96701 * 113.99378 * 179.97438 * 4 3 2 34 34 H 1.09001 * 109.46948 * 64.99769 * 5 3 2 35 35 H 1.09002 * 109.47058 * 185.00042 * 5 3 2 36 36 H 1.09002 * 109.47159 * 60.00020 * 6 5 3 37 37 H 1.08994 * 109.47226 * 180.02562 * 6 5 3 38 38 H 1.09004 * 109.47127 * 300.00195 * 6 5 3 39 39 H 1.09001 * 109.47146 * 58.65734 * 7 3 2 40 40 H 1.08994 * 109.47107 * 298.65279 * 7 3 2 41 41 H 1.08997 * 109.47342 * 55.64767 * 8 7 3 42 42 H 1.08994 * 109.47260 * 295.64498 * 8 7 3 43 43 H 0.96999 * 120.00271 * 0.02562 * 9 8 7 44 44 H 0.96998 * 119.99905 * 179.97438 * 17 16 14 45 45 H 1.07991 * 120.00285 * 359.97438 * 23 22 12 46 46 H 1.07992 * 120.00092 * 179.97438 * 24 23 22 47 47 H 1.08006 * 119.99727 * 179.71774 * 25 24 23 48 48 H 1.08000 * 120.00612 * 179.97438 * 26 25 24 49 49 H 1.07999 * 120.00247 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.5447 2.1229 1.1550 5 6 3.5698 1.4426 0.0250 6 6 4.0605 0.6221 1.2195 7 6 1.5505 2.1565 -1.2616 8 6 2.0324 3.6085 -1.2452 9 7 1.6531 4.2630 -2.4998 10 6 1.9758 5.5545 -2.7105 11 8 2.5798 6.1750 -1.8613 12 6 1.5853 6.2280 -4.0008 13 1 2.0436 5.7020 -4.8384 14 6 0.0859 6.1985 -4.1491 15 1 -0.3608 5.7729 -5.0355 16 6 -0.7156 6.7148 -3.1531 17 7 -0.1712 7.2717 -2.0934 18 14 -2.5748 6.6233 -3.3089 19 1 -3.0609 5.3583 -2.7016 20 1 -3.1880 7.7781 -2.6047 21 1 -2.9538 6.6608 -4.7442 22 6 2.0600 7.6581 -3.9848 23 6 3.3512 7.9534 -3.5893 24 6 3.7868 9.2653 -3.5751 25 6 2.9313 10.2818 -3.9572 26 6 1.6406 9.9864 -4.3540 27 6 1.2043 8.6747 -4.3660 28 1 -0.3633 0.4247 -0.9358 29 1 -0.3633 -1.0228 0.0999 30 1 -0.3633 0.5980 0.8357 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.8293 3.0447 1.2206 34 1 3.9483 1.0029 -0.8978 35 1 3.9317 2.4669 0.1146 36 1 3.6986 -0.4022 1.1299 37 1 5.1502 0.6225 1.2375 38 1 3.6819 1.0617 2.1423 39 1 0.4611 2.1355 -1.2913 40 1 1.9479 1.6517 -2.1420 41 1 3.1168 3.6303 -1.1374 42 1 1.5735 4.1342 -0.4079 43 1 1.1698 3.7669 -3.1789 44 1 -0.7350 7.6353 -1.3929 45 1 4.0196 7.1593 -3.2913 46 1 4.7953 9.4960 -3.2657 47 1 3.2703 11.3071 -3.9417 48 1 0.9721 10.7806 -4.6521 49 1 0.1957 8.4439 -4.6757 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362360642.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:33 Heat of formation + Delta-G solvation = -101.825833 kcal Electronic energy + Delta-G solvation = -27858.648622 eV Core-core repulsion = 24170.001924 eV Total energy + Delta-G solvation = -3688.646698 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.81447 -40.11994 -38.98155 -35.55759 -35.45193 -34.47332 -32.69009 -32.65129 -31.35513 -31.22481 -28.95988 -26.68822 -25.61702 -23.82503 -23.63109 -22.93133 -22.11382 -21.03668 -20.63413 -18.66252 -17.58347 -17.43925 -16.98933 -16.75188 -16.55226 -16.23434 -15.90109 -15.64117 -15.41956 -15.28387 -14.88695 -14.64648 -14.52585 -14.15497 -13.93877 -13.91064 -13.62723 -13.26640 -13.01390 -12.97981 -12.79349 -12.76483 -12.68154 -12.56369 -12.50739 -12.27657 -12.10288 -11.78970 -11.76350 -11.67811 -11.40980 -11.19960 -11.07237 -10.74496 -10.63668 -10.12108 -9.61758 -9.36949 -9.08931 -8.06972 -6.26477 0.88766 0.94025 1.40084 1.45303 1.51965 2.33105 2.45906 2.78477 3.20739 3.32236 3.37615 3.73342 3.82160 3.97122 4.16352 4.27225 4.34614 4.36467 4.39459 4.50837 4.53489 4.56541 4.60792 4.66698 4.72729 4.81024 4.88732 4.91585 5.00927 5.03890 5.06696 5.12867 5.14410 5.18616 5.21165 5.28853 5.36125 5.45568 5.46750 5.51939 5.55482 5.70822 5.89341 5.92949 5.98554 6.01402 6.43709 6.53967 6.75463 6.76761 7.10911 7.42567 7.95130 8.91830 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014004 B = 0.003921 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.975656 B = 7140.067827 C = 8598.288783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.108 4.108 3 C 0.140 3.860 4 O -0.571 6.571 5 C -0.151 4.151 6 C -0.147 4.147 7 C -0.146 4.146 8 C 0.128 3.872 9 N -0.727 5.727 10 C 0.548 3.452 11 O -0.585 6.585 12 C 0.045 3.955 13 H 0.068 0.932 14 C -0.533 4.533 15 H 0.072 0.928 16 C 0.041 3.959 17 N -0.873 5.873 18 Si 0.938 3.062 19 H -0.279 1.279 20 H -0.296 1.296 21 H -0.261 1.261 22 C -0.035 4.035 23 C -0.118 4.118 24 C -0.147 4.147 25 C -0.142 4.142 26 C -0.152 4.152 27 C -0.088 4.088 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.043 0.957 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.378 0.622 34 H 0.082 0.918 35 H 0.057 0.943 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.048 0.952 39 H 0.070 0.930 40 H 0.094 0.906 41 H 0.058 0.942 42 H 0.030 0.970 43 H 0.404 0.596 44 H 0.254 0.746 45 H 0.100 0.900 46 H 0.129 0.871 47 H 0.138 0.862 48 H 0.126 0.874 49 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.224 -11.504 0.376 12.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.145 4.145 3 C 0.099 3.901 4 O -0.379 6.379 5 C -0.189 4.189 6 C -0.204 4.204 7 C -0.184 4.184 8 C 0.004 3.996 9 N -0.379 5.379 10 C 0.337 3.663 11 O -0.464 6.464 12 C 0.024 3.976 13 H 0.086 0.914 14 C -0.571 4.571 15 H 0.090 0.910 16 C -0.163 4.163 17 N -0.508 5.508 18 Si 0.764 3.236 19 H -0.205 1.205 20 H -0.222 1.222 21 H -0.185 1.185 22 C -0.036 4.036 23 C -0.136 4.136 24 C -0.165 4.165 25 C -0.160 4.160 26 C -0.170 4.170 27 C -0.106 4.106 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.062 0.938 31 H 0.110 0.890 32 H 0.095 0.905 33 H 0.227 0.773 34 H 0.101 0.899 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.113 0.887 41 H 0.076 0.924 42 H 0.049 0.951 43 H 0.239 0.761 44 H 0.064 0.936 45 H 0.118 0.882 46 H 0.147 0.853 47 H 0.156 0.844 48 H 0.144 0.856 49 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 5.344 -11.555 1.280 12.795 hybrid contribution -1.247 0.696 0.055 1.429 sum 4.096 -10.859 1.335 11.683 Atomic orbital electron populations 1.21748 0.95882 1.01706 1.01557 1.21597 0.96252 0.93050 1.03566 1.21242 0.92460 0.92895 0.83521 1.86467 1.76710 1.29199 1.45503 1.22252 0.95016 1.01094 1.00532 1.21746 1.00797 1.00304 0.97535 1.22457 1.02096 0.93571 1.00251 1.21148 0.98926 0.92766 0.86720 1.45700 1.60485 1.12084 1.19664 1.21001 0.75112 0.80557 0.89645 1.90498 1.43595 1.64457 1.47889 1.18017 0.97256 0.90405 0.91927 0.91373 1.20890 0.89042 1.42008 1.05155 0.91022 1.25548 1.01593 0.94158 0.95014 1.70235 1.35725 1.36315 1.08494 0.85862 0.81936 0.77137 0.78642 1.20536 1.22213 1.18455 1.19941 0.92192 0.96571 0.94903 1.21042 0.96264 0.96687 0.99615 1.21199 1.00317 0.92819 1.02160 1.21178 0.94041 0.99364 1.01408 1.21317 0.96802 0.96385 1.02538 1.21136 0.99042 0.92279 0.98185 0.92951 0.91682 0.93754 0.89001 0.90514 0.77307 0.89891 0.92433 0.91453 0.92277 0.93303 0.91182 0.88748 0.92421 0.95127 0.76147 0.93631 0.88226 0.85266 0.84448 0.85608 0.87037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 9.35 71.98 0.67 -2.39 16 2 C -0.11 -1.97 4.74 30.60 0.15 -1.83 16 3 C 0.14 3.04 0.52 -10.79 -0.01 3.03 16 4 O -0.57 -14.89 11.65 -148.98 -1.74 -16.62 16 5 C -0.15 -2.97 4.74 30.59 0.15 -2.82 16 6 C -0.15 -2.57 9.32 71.98 0.67 -1.90 16 7 C -0.15 -3.56 4.30 30.60 0.13 -3.43 16 8 C 0.13 4.21 5.01 86.38 0.43 4.64 16 9 N -0.73 -27.99 5.46 -463.06 -2.53 -30.52 16 10 C 0.55 25.88 5.44 87.66 0.48 26.35 16 11 O -0.58 -31.52 13.92 -3.04 -0.04 -31.57 16 12 C 0.05 2.13 2.78 -13.03 -0.04 2.09 16 13 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 14 C -0.53 -25.79 7.10 25.60 0.18 -25.61 16 15 H 0.07 3.32 7.81 -2.91 -0.02 3.30 16 16 C 0.04 2.09 4.02 84.66 0.34 2.43 16 17 N -0.87 -48.52 10.90 21.45 0.23 -48.28 16 18 Si 0.94 40.82 29.54 68.60 2.03 42.84 16 19 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 20 H -0.30 -13.30 7.11 99.48 0.71 -12.60 16 21 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 22 C -0.04 -1.69 4.52 -19.87 -0.09 -1.78 16 23 C -0.12 -5.38 8.21 22.27 0.18 -5.19 16 24 C -0.15 -5.84 10.05 22.27 0.22 -5.62 16 25 C -0.14 -5.32 10.05 22.27 0.22 -5.09 16 26 C -0.15 -6.21 10.05 22.27 0.22 -5.99 16 27 C -0.09 -4.15 8.22 22.27 0.18 -3.97 16 28 H 0.05 1.08 6.73 -2.39 -0.02 1.07 16 29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.04 1.07 7.49 -2.39 -0.02 1.05 16 31 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.08 1.35 6.29 -2.39 -0.02 1.33 16 33 H 0.38 9.54 7.39 -74.06 -0.55 8.99 16 34 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.06 1.29 6.63 -2.39 -0.02 1.27 16 36 H 0.07 1.03 6.32 -2.39 -0.02 1.01 16 37 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.05 0.96 7.82 -2.38 -0.02 0.95 16 39 H 0.07 1.87 6.51 -2.39 -0.02 1.86 16 40 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.06 1.87 6.36 -2.39 -0.02 1.86 16 42 H 0.03 1.17 6.99 -2.39 -0.02 1.15 16 43 H 0.40 13.93 8.36 -92.71 -0.77 13.16 16 44 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 45 H 0.10 4.57 6.98 -2.92 -0.02 4.55 16 46 H 0.13 4.29 8.06 -2.91 -0.02 4.27 16 47 H 0.14 4.07 8.06 -2.91 -0.02 4.05 16 48 H 0.13 4.38 8.06 -2.91 -0.02 4.36 16 49 H 0.11 5.47 6.05 -2.91 -0.02 5.45 16 Total: -1.00 -64.37 380.28 1.69 -62.68 By element: Atomic # 1 Polarization: 48.92 SS G_CDS: -0.37 Total: 48.55 kcal Atomic # 6 Polarization: -31.18 SS G_CDS: 4.10 Total: -27.08 kcal Atomic # 7 Polarization: -76.51 SS G_CDS: -2.29 Total: -78.80 kcal Atomic # 8 Polarization: -46.41 SS G_CDS: -1.78 Total: -48.19 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.84 kcal Total: -64.37 1.69 -62.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362360642.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.149 kcal (2) G-P(sol) polarization free energy of solvation -64.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds