Wall clock time and date at job start Tue Mar 31 2020 12:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46910 * 2 1 4 4 O 1.42898 * 109.47188 * 62.39491 * 3 2 1 5 5 C 1.53007 * 109.47034 * 182.39129 * 3 2 1 6 6 C 1.53000 * 109.46773 * 300.54603 * 5 3 2 7 7 C 1.52995 * 109.47347 * 302.38993 * 3 2 1 8 8 N 1.46501 * 109.47194 * 185.00099 * 7 3 2 9 9 C 1.46507 * 119.99867 * 270.00268 * 8 7 3 10 10 C 1.34771 * 120.00253 * 90.00103 * 8 7 3 11 11 O 1.21282 * 119.99825 * 359.97438 * 10 8 7 12 12 C 1.50699 * 120.00381 * 180.02562 * 10 8 7 13 13 H 1.09003 * 109.47158 * 59.99713 * 12 10 8 14 14 C 1.50703 * 109.47008 * 300.00351 * 12 10 8 15 15 H 1.08000 * 119.99647 * 335.05699 * 14 12 10 16 16 C 1.37876 * 119.99998 * 155.05612 * 14 12 10 17 17 N 1.31517 * 119.99899 * 183.50935 * 16 14 12 18 18 Si 1.86803 * 120.00091 * 3.51737 * 16 14 12 19 19 H 1.48500 * 109.47065 * 87.73890 * 18 16 14 20 20 H 1.48501 * 109.46831 * 207.74225 * 18 16 14 21 21 H 1.48498 * 109.46821 * 327.74117 * 18 16 14 22 22 C 1.50690 * 109.47424 * 180.02562 * 12 10 8 23 23 C 1.38241 * 120.00145 * 247.44632 * 22 12 10 24 24 C 1.38231 * 120.00015 * 179.97438 * 23 22 12 25 25 C 1.38235 * 120.00373 * 359.96118 * 24 23 22 26 26 C 1.38246 * 119.99702 * 359.97438 * 25 24 23 27 27 C 1.38227 * 119.99903 * 0.07757 * 26 25 24 28 28 H 1.09006 * 109.46788 * 305.33997 * 1 2 3 29 29 H 1.08994 * 109.47331 * 65.33926 * 1 2 3 30 30 H 1.09002 * 109.46605 * 185.34309 * 1 2 3 31 31 H 1.09003 * 109.46826 * 240.00277 * 2 1 3 32 32 H 1.08999 * 109.47269 * 120.00481 * 2 1 3 33 33 H 0.96700 * 113.99648 * 299.99853 * 4 3 2 34 34 H 1.09002 * 109.46655 * 60.53782 * 5 3 2 35 35 H 1.08993 * 109.47053 * 180.54489 * 5 3 2 36 36 H 1.09000 * 109.47101 * 304.33698 * 6 5 3 37 37 H 1.08993 * 109.47462 * 64.34176 * 6 5 3 38 38 H 1.09000 * 109.46800 * 184.34233 * 6 5 3 39 39 H 1.09006 * 109.46644 * 65.00424 * 7 3 2 40 40 H 1.09001 * 109.47545 * 305.00075 * 7 3 2 41 41 H 1.08997 * 109.46733 * 269.99859 * 9 8 7 42 42 H 1.09000 * 109.46854 * 29.99828 * 9 8 7 43 43 H 1.08992 * 109.47003 * 149.99872 * 9 8 7 44 44 H 0.96993 * 119.99805 * 180.02562 * 17 16 14 45 45 H 1.08002 * 119.99624 * 359.97438 * 23 22 12 46 46 H 1.08002 * 120.00197 * 179.97438 * 24 23 22 47 47 H 1.07994 * 120.00495 * 179.72304 * 25 24 23 48 48 H 1.08000 * 119.99720 * 179.97438 * 26 25 24 49 49 H 1.08002 * 120.00178 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.6102 2.0997 1.1939 5 6 3.5689 1.4430 -0.0602 6 6 4.1271 0.6928 1.1508 7 6 1.4815 2.1809 -1.2180 8 7 2.0631 3.5239 -1.2840 9 6 1.4011 4.6429 -0.6087 10 6 3.2072 3.7301 -1.9658 11 8 3.7556 2.8037 -2.5244 12 6 3.8059 5.1114 -2.0332 13 1 4.0339 5.4582 -1.0252 14 6 2.8227 6.0540 -2.6782 15 1 2.0700 5.6714 -3.3515 16 6 2.8842 7.4048 -2.4086 17 7 1.9843 8.2183 -2.9166 18 14 4.2459 8.0794 -1.3223 19 1 5.4335 8.3955 -2.1559 20 1 3.7733 9.3139 -0.6455 21 1 4.6132 7.0651 -0.3018 22 6 5.0719 5.0710 -2.8494 23 6 6.2934 5.2950 -2.2421 24 6 7.4547 5.2574 -2.9908 25 6 7.3949 4.9951 -4.3467 26 6 6.1735 4.7698 -4.9538 27 6 5.0121 4.8084 -4.2053 28 1 -0.3633 0.5945 0.8384 29 1 -0.3634 0.4288 -0.9339 30 1 -0.3632 -1.0233 0.0957 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 0.6496 2.1366 1.2984 34 1 3.8965 0.9501 -0.9755 35 1 3.9326 2.4704 -0.0504 36 1 3.7372 1.1387 2.0658 37 1 3.8268 -0.3537 1.1000 38 1 5.2151 0.7590 1.1493 39 1 0.3977 2.2582 -1.1305 40 1 1.7346 1.6305 -2.1242 41 1 0.6947 5.1133 -1.2926 42 1 0.8678 4.2742 0.2676 43 1 2.1481 5.3734 -0.2986 44 1 2.0278 9.1686 -2.7272 45 1 6.3402 5.4993 -1.1826 46 1 8.4090 5.4328 -2.5164 47 1 8.3018 4.9701 -4.9325 48 1 6.1267 4.5653 -6.0133 49 1 4.0578 4.6328 -4.6797 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412415954.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:09 Heat of formation + Delta-G solvation = -68.557543 kcal Electronic energy + Delta-G solvation = -28989.866060 eV Core-core repulsion = 25302.661983 eV Total energy + Delta-G solvation = -3687.204077 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.98431 -38.67878 -37.54526 -34.47839 -33.67703 -33.23669 -31.81328 -31.46753 -30.10636 -28.77738 -27.32657 -25.68537 -24.56999 -23.19034 -22.71244 -21.81391 -20.86527 -19.67055 -18.46408 -17.15224 -16.71934 -16.10606 -16.03925 -15.37631 -15.21562 -14.86534 -14.49222 -14.40179 -14.01364 -13.58837 -13.48623 -13.33137 -12.88623 -12.69945 -12.65335 -12.45151 -12.33589 -12.14547 -12.03429 -11.90983 -11.82362 -11.52035 -11.39981 -11.20909 -11.09041 -10.95562 -10.90548 -10.58250 -10.45291 -10.29881 -10.21538 -9.88454 -9.86720 -9.49396 -8.87430 -8.64780 -8.10699 -7.83934 -7.77276 -6.27418 -4.29652 2.17781 2.24315 3.19718 3.26285 3.32055 3.59272 3.74461 4.26045 4.41057 4.64743 4.79730 4.87648 4.95222 5.03714 5.11364 5.35697 5.51220 5.56673 5.57316 5.58993 5.63425 5.73552 5.80485 5.83553 5.85571 5.91214 5.97785 5.98551 6.04749 6.08991 6.25330 6.27161 6.31502 6.32427 6.43172 6.47389 6.55060 6.67525 6.71716 6.76740 6.89327 7.18502 7.22591 7.29027 7.33271 7.63475 7.78260 7.82949 8.12769 8.26944 8.71063 9.11117 9.31125 10.83421 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.012927 B = 0.005255 C = 0.004403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.494565 B = 5327.453955 C = 6357.554233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.149 4.149 3 C 0.121 3.879 4 O -0.551 6.551 5 C -0.102 4.102 6 C -0.147 4.147 7 C 0.092 3.908 8 N -0.605 5.605 9 C 0.102 3.898 10 C 0.539 3.461 11 O -0.560 6.560 12 C 0.021 3.979 13 H 0.069 0.931 14 C -0.505 4.505 15 H 0.081 0.919 16 C 0.087 3.913 17 N -0.884 5.884 18 Si 0.861 3.139 19 H -0.267 1.267 20 H -0.286 1.286 21 H -0.261 1.261 22 C -0.029 4.029 23 C -0.138 4.138 24 C -0.129 4.129 25 C -0.143 4.143 26 C -0.130 4.130 27 C -0.070 4.070 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.366 0.634 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.061 0.939 42 H 0.050 0.950 43 H 0.075 0.925 44 H 0.268 0.732 45 H 0.107 0.893 46 H 0.109 0.891 47 H 0.108 0.892 48 H 0.110 0.890 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.316 -11.500 6.066 13.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.187 4.187 3 C 0.079 3.921 4 O -0.357 6.357 5 C -0.139 4.139 6 C -0.204 4.204 7 C -0.032 4.032 8 N -0.337 5.337 9 C -0.041 4.041 10 C 0.330 3.670 11 O -0.439 6.439 12 C 0.000 4.000 13 H 0.086 0.914 14 C -0.542 4.542 15 H 0.099 0.901 16 C -0.117 4.117 17 N -0.520 5.520 18 Si 0.688 3.312 19 H -0.192 1.192 20 H -0.212 1.212 21 H -0.186 1.186 22 C -0.030 4.030 23 C -0.156 4.156 24 C -0.147 4.147 25 C -0.161 4.161 26 C -0.148 4.148 27 C -0.089 4.089 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.213 0.787 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.091 0.909 40 H 0.103 0.897 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.093 0.907 44 H 0.078 0.922 45 H 0.125 0.875 46 H 0.127 0.873 47 H 0.126 0.874 48 H 0.128 0.872 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.532 -11.692 5.836 13.078 hybrid contribution 0.016 0.626 0.407 0.747 sum 0.547 -11.065 6.243 12.717 Atomic orbital electron populations 1.21859 0.95911 1.01913 1.01869 1.22211 0.96048 0.97376 1.03069 1.21725 0.95630 0.90038 0.84680 1.86597 1.26543 1.80312 1.42278 1.21482 0.91714 1.01991 0.98731 1.21753 1.00111 0.99595 0.98984 1.22048 0.97200 0.85036 0.98883 1.47527 1.25235 1.07823 1.53089 1.21690 0.98407 0.88412 0.95564 1.20945 0.79203 0.90909 0.75950 1.90574 1.61521 1.45196 1.46615 1.18573 0.92162 0.91775 0.97537 0.91364 1.20457 1.14162 0.90521 1.29067 0.90127 1.24878 0.94989 0.96630 0.95204 1.69855 1.33851 1.04277 1.44056 0.87093 0.83489 0.78918 0.81732 1.19245 1.21240 1.18613 1.20117 0.94093 0.94032 0.94715 1.21001 0.92652 1.02829 0.99136 1.20875 0.97442 1.02008 0.94401 1.20858 0.97190 1.03202 0.94859 1.21034 0.92943 1.01681 0.99147 1.20847 0.97627 0.96756 0.93629 0.92693 0.92246 0.92546 0.90999 0.90924 0.78673 0.90078 0.91306 0.92249 0.93312 0.93338 0.90934 0.89684 0.92044 0.93155 0.90671 0.92224 0.87459 0.87337 0.87376 0.87170 0.86448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 9.19 37.16 0.34 -1.01 16 2 C -0.15 -1.57 4.78 -26.73 -0.13 -1.70 16 3 C 0.12 1.60 0.61 -90.62 -0.06 1.54 16 4 O -0.55 -7.12 11.06 -35.23 -0.39 -7.51 16 5 C -0.10 -1.58 3.83 -26.73 -0.10 -1.69 16 6 C -0.15 -1.96 9.33 37.16 0.35 -1.61 16 7 C 0.09 1.37 4.19 -4.04 -0.02 1.35 16 8 N -0.60 -10.97 2.53 -181.57 -0.46 -11.43 16 9 C 0.10 1.78 8.97 59.85 0.54 2.31 16 10 C 0.54 11.48 5.26 -10.99 -0.06 11.43 16 11 O -0.56 -12.66 13.21 5.56 0.07 -12.58 16 12 C 0.02 0.47 1.09 -94.08 -0.10 0.37 16 13 H 0.07 1.56 4.65 -51.93 -0.24 1.32 16 14 C -0.50 -12.71 6.01 -34.44 -0.21 -12.91 16 15 H 0.08 2.25 8.05 -52.49 -0.42 1.82 16 16 C 0.09 2.29 5.47 -17.82 -0.10 2.19 16 17 N -0.88 -24.70 13.96 55.43 0.77 -23.92 16 18 Si 0.86 20.23 26.12 -169.99 -4.44 15.79 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 21 H -0.26 -5.78 6.05 56.52 0.34 -5.43 16 22 C -0.03 -0.64 3.57 -104.62 -0.37 -1.02 16 23 C -0.14 -2.87 8.68 -39.58 -0.34 -3.22 16 24 C -0.13 -2.39 10.05 -39.59 -0.40 -2.79 16 25 C -0.14 -2.56 10.05 -39.58 -0.40 -2.96 16 26 C -0.13 -2.49 10.05 -39.58 -0.40 -2.89 16 27 C -0.07 -1.55 8.38 -39.58 -0.33 -1.88 16 28 H 0.05 0.42 6.59 -51.93 -0.34 0.08 16 29 H 0.06 0.52 6.81 -51.93 -0.35 0.16 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.76 6.65 -51.93 -0.35 0.41 16 33 H 0.37 3.51 7.30 45.56 0.33 3.84 16 34 H 0.08 1.36 7.40 -51.93 -0.38 0.97 16 35 H 0.07 1.28 6.29 -51.93 -0.33 0.95 16 36 H 0.06 0.81 7.57 -51.93 -0.39 0.42 16 37 H 0.05 0.57 6.72 -51.93 -0.35 0.22 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.90 6.73 -51.93 -0.35 0.55 16 40 H 0.08 1.37 7.42 -51.93 -0.39 0.98 16 41 H 0.06 1.15 7.88 -51.93 -0.41 0.74 16 42 H 0.05 0.71 7.11 -51.93 -0.37 0.34 16 43 H 0.07 1.44 6.14 -51.93 -0.32 1.12 16 44 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 45 H 0.11 2.11 7.96 -52.49 -0.42 1.69 16 46 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 47 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 48 H 0.11 1.81 8.06 -52.49 -0.42 1.38 16 49 H 0.12 2.68 7.85 -52.49 -0.41 2.26 16 LS Contribution 372.66 15.07 5.62 5.62 Total: -1.00 -29.46 372.66 -7.83 -37.29 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -7.22 Total: 11.24 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: -1.78 Total: -14.49 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: 0.31 Total: -35.35 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.32 Total: -20.10 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -4.44 Total: 15.79 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.46 -7.83 -37.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412415954.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.265 kcal (2) G-P(sol) polarization free energy of solvation -29.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds