Wall clock time and date at job start Tue Mar 31 2020 12:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47198 * 2 1 4 4 C 1.52996 * 109.46825 * 239.99782 * 2 1 3 5 5 C 1.53005 * 109.46663 * 119.99731 * 2 1 3 6 6 C 1.52995 * 109.46921 * 53.91837 * 5 2 1 7 7 H 1.08995 * 109.47422 * 306.62406 * 6 5 2 8 8 C 1.53001 * 109.47019 * 186.62534 * 6 5 2 9 9 O 1.42899 * 109.46974 * 304.99882 * 8 6 5 10 10 N 1.46499 * 109.47484 * 66.62649 * 6 5 2 11 11 C 1.34780 * 120.00330 * 204.99830 * 10 6 5 12 12 O 1.21279 * 119.99670 * 359.97438 * 11 10 6 13 13 C 1.50692 * 120.00302 * 179.97438 * 11 10 6 14 14 H 1.09001 * 109.47267 * 300.00154 * 13 11 10 15 15 C 1.50707 * 109.46963 * 60.00309 * 13 11 10 16 16 H 1.07992 * 120.00211 * 33.70079 * 15 13 11 17 17 C 1.37883 * 119.99891 * 213.70503 * 15 13 11 18 18 N 1.31506 * 119.99780 * 187.13036 * 17 15 13 19 19 Si 1.86803 * 119.99931 * 7.40384 * 17 15 13 20 20 H 1.48503 * 109.46945 * 272.58785 * 19 17 15 21 21 H 1.48499 * 109.47308 * 32.58650 * 19 17 15 22 22 H 1.48491 * 109.46923 * 152.59063 * 19 17 15 23 23 C 1.50696 * 109.47196 * 179.97438 * 13 11 10 24 24 C 1.38229 * 120.00460 * 293.94091 * 23 13 11 25 25 C 1.38235 * 120.00639 * 179.78520 * 24 23 13 26 26 C 1.38235 * 119.99619 * 0.44709 * 25 24 23 27 27 C 1.38241 * 120.00060 * 359.80851 * 26 25 24 28 28 C 1.38239 * 119.99922 * 359.97438 * 27 26 25 29 29 H 1.09004 * 109.46817 * 300.00256 * 1 2 3 30 30 H 1.08997 * 109.46851 * 59.99870 * 1 2 3 31 31 H 1.08994 * 109.47336 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46805 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.46641 * 300.00043 * 3 2 1 34 34 H 1.08999 * 109.46922 * 59.99628 * 3 2 1 35 35 H 1.09001 * 109.47353 * 310.50298 * 4 2 1 36 36 H 1.08998 * 109.47323 * 70.51229 * 4 2 1 37 37 H 1.09007 * 109.46850 * 190.50544 * 4 2 1 38 38 H 1.08998 * 109.47417 * 293.91110 * 5 2 1 39 39 H 1.09005 * 109.46426 * 173.91719 * 5 2 1 40 40 H 1.09004 * 109.47257 * 64.99855 * 8 6 5 41 41 H 1.09000 * 109.47591 * 185.00153 * 8 6 5 42 42 H 0.96705 * 113.99884 * 179.97438 * 9 8 6 43 43 H 0.97002 * 119.99646 * 24.99685 * 10 6 5 44 44 H 0.97001 * 120.00018 * 180.26982 * 18 17 15 45 45 H 1.08008 * 119.99899 * 0.02562 * 24 23 13 46 46 H 1.07991 * 120.00350 * 180.27473 * 25 24 23 47 47 H 1.08000 * 120.00250 * 179.82931 * 26 25 24 48 48 H 1.07992 * 119.99935 * 180.02562 * 27 26 25 49 49 H 1.07994 * 120.00083 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0399 -0.7212 1.2493 6 6 1.4089 -2.1128 1.3281 7 1 0.3245 -2.0243 1.2622 8 6 1.7871 -2.7698 2.6571 9 8 3.2094 -2.7805 2.7953 10 7 1.8999 -2.9352 0.2196 11 6 1.1625 -3.9698 -0.2302 12 8 0.0926 -4.2202 0.2831 13 6 1.6673 -4.8154 -1.3708 14 1 1.8085 -4.1898 -2.2522 15 6 2.9814 -5.4450 -0.9860 16 1 3.1627 -5.7328 0.0389 17 6 3.9522 -5.6536 -1.9427 18 7 5.0399 -6.3277 -1.6395 19 14 3.7258 -4.9721 -3.6672 20 1 2.9757 -5.9528 -4.4924 21 1 2.9662 -3.6979 -3.6002 22 1 5.0555 -4.7242 -4.2799 23 6 0.6635 -5.8967 -1.6772 24 6 0.4138 -6.8910 -0.7499 25 6 -0.5103 -7.8804 -1.0291 26 6 -1.1781 -7.8807 -2.2395 27 6 -0.9246 -6.8894 -3.1690 28 6 -0.0037 -5.8974 -2.8879 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.5318 -1.6805 -1.3478 36 1 1.8378 -0.1108 -2.1293 37 1 3.1138 -0.8864 -1.1605 38 1 1.7683 -0.1483 2.1360 39 1 3.1245 -0.8165 1.1965 40 1 1.3463 -2.2063 3.4794 41 1 1.4126 -3.7933 2.6760 42 1 3.5216 -3.1831 3.6173 43 1 2.7558 -2.7350 -0.1907 44 1 5.7247 -6.4711 -2.3114 45 1 0.9380 -6.8927 0.1944 46 1 -0.7085 -8.6546 -0.3029 47 1 -1.8981 -8.6552 -2.4588 48 1 -1.4466 -6.8894 -4.1144 49 1 0.1940 -5.1227 -3.6139 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412722690.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:53 Heat of formation + Delta-G solvation = -77.631006 kcal Electronic energy + Delta-G solvation = -28716.918936 eV Core-core repulsion = 25029.321404 eV Total energy + Delta-G solvation = -3687.597532 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.82162 -38.52665 -37.26942 -36.29864 -33.61562 -33.47214 -31.47859 -30.09007 -30.00882 -27.58615 -27.26088 -27.00202 -25.83354 -23.63363 -21.90332 -21.66104 -20.35037 -19.36358 -18.63797 -17.23051 -17.09875 -16.19874 -16.02169 -15.51581 -15.14833 -14.57678 -14.42396 -14.31427 -14.18250 -13.82287 -13.65105 -13.17884 -13.08374 -12.81778 -12.64258 -12.60212 -12.45815 -12.07348 -12.05779 -11.82224 -11.75614 -11.51298 -11.33221 -11.17672 -11.07553 -11.02000 -10.56476 -10.41189 -10.36058 -10.29651 -10.20837 -9.88413 -9.72182 -9.49617 -8.89677 -8.65233 -8.18276 -8.09190 -7.77077 -6.26199 -4.29059 2.19751 2.26367 3.17823 3.23411 3.27898 3.61935 3.98824 4.25187 4.57908 4.67362 4.74523 4.90001 4.93835 5.05458 5.34781 5.42645 5.56111 5.56364 5.58925 5.63804 5.65956 5.71802 5.75263 5.81515 5.85835 5.89504 5.99005 6.00925 6.03320 6.10705 6.16145 6.23136 6.27758 6.34423 6.36359 6.40441 6.49892 6.57065 6.59689 6.78990 6.89503 7.20044 7.22339 7.29887 7.34417 7.64475 7.84583 7.87314 8.24959 8.38633 8.75585 9.17713 9.32232 10.85159 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.011241 B = 0.005188 C = 0.004755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.206002 B = 5396.266553 C = 5887.173845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.068 4.068 3 C -0.139 4.139 4 C -0.156 4.156 5 C -0.110 4.110 6 C 0.146 3.854 7 H 0.098 0.902 8 C 0.064 3.936 9 O -0.562 6.562 10 N -0.710 5.710 11 C 0.534 3.466 12 O -0.567 6.567 13 C 0.020 3.980 14 H 0.068 0.932 15 C -0.508 4.508 16 H 0.082 0.918 17 C 0.086 3.914 18 N -0.881 5.881 19 Si 0.863 3.137 20 H -0.269 1.269 21 H -0.261 1.261 22 H -0.285 1.285 23 C -0.024 4.024 24 C -0.071 4.071 25 C -0.130 4.130 26 C -0.144 4.144 27 C -0.129 4.129 28 C -0.137 4.137 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.074 0.926 36 H 0.047 0.953 37 H 0.056 0.944 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.042 0.958 41 H 0.051 0.949 42 H 0.373 0.627 43 H 0.408 0.592 44 H 0.268 0.732 45 H 0.116 0.884 46 H 0.110 0.890 47 H 0.108 0.892 48 H 0.108 0.892 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.664 10.180 3.567 12.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.068 4.068 3 C -0.196 4.196 4 C -0.214 4.214 5 C -0.147 4.147 6 C 0.041 3.959 7 H 0.116 0.884 8 C -0.015 4.015 9 O -0.366 6.366 10 N -0.363 5.363 11 C 0.323 3.677 12 O -0.446 6.446 13 C -0.001 4.001 14 H 0.086 0.914 15 C -0.545 4.545 16 H 0.100 0.900 17 C -0.119 4.119 18 N -0.517 5.517 19 Si 0.690 3.310 20 H -0.194 1.194 21 H -0.186 1.186 22 H -0.211 1.211 23 C -0.025 4.025 24 C -0.089 4.089 25 C -0.148 4.148 26 C -0.162 4.162 27 C -0.147 4.147 28 C -0.155 4.155 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.219 0.781 43 H 0.245 0.755 44 H 0.078 0.922 45 H 0.134 0.866 46 H 0.128 0.872 47 H 0.126 0.874 48 H 0.127 0.873 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.253 10.226 3.274 12.958 hybrid contribution 0.519 -0.033 -0.572 0.773 sum -6.734 10.193 2.702 12.512 Atomic orbital electron populations 1.21976 0.94891 1.02287 1.01148 1.20535 0.95525 0.95047 0.95723 1.21866 1.00994 0.95527 1.01223 1.22258 1.01433 1.01509 0.96170 1.21824 1.01654 0.94005 0.97261 1.21051 0.99598 0.89825 0.85472 0.88385 1.22659 0.81710 1.00111 0.97035 1.86521 1.21186 1.84079 1.44860 1.46110 1.24027 1.31005 1.35125 1.21121 0.82996 0.79112 0.84489 1.90577 1.23187 1.70065 1.60791 1.18536 0.95176 0.92132 0.94263 0.91387 1.20512 0.94906 1.41451 0.97617 0.90007 1.24968 0.94917 0.93903 0.98073 1.69871 1.08758 1.38141 1.34914 0.87017 0.77868 0.80580 0.85573 1.19371 1.18633 1.21071 1.20068 0.93060 0.96461 0.92949 1.20821 0.95812 0.93136 0.99159 1.21020 0.97870 0.98976 0.96919 1.20846 1.01265 0.99230 0.94875 1.20869 0.99150 0.95816 0.98856 1.20961 0.97846 0.99242 0.97431 0.93001 0.93004 0.91833 0.92689 0.92935 0.93030 0.90704 0.93409 0.92483 0.91264 0.90382 0.93999 0.93061 0.78139 0.75481 0.92219 0.86624 0.87226 0.87409 0.87347 0.87524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 7.94 37.16 0.30 -1.43 16 2 C -0.07 -0.82 0.80 -154.50 -0.12 -0.94 16 3 C -0.14 -1.42 8.45 37.16 0.31 -1.11 16 4 C -0.16 -2.14 7.04 37.16 0.26 -1.88 16 5 C -0.11 -1.38 3.65 -26.73 -0.10 -1.47 16 6 C 0.15 2.19 2.03 -67.93 -0.14 2.05 16 7 H 0.10 1.53 5.39 -51.93 -0.28 1.25 16 8 C 0.06 0.93 6.85 37.16 0.25 1.18 16 9 O -0.56 -8.24 12.86 -35.23 -0.45 -8.69 16 10 N -0.71 -12.75 2.67 -53.81 -0.14 -12.89 16 11 C 0.53 11.30 6.57 -10.99 -0.07 11.22 16 12 O -0.57 -12.94 15.08 5.56 0.08 -12.86 16 13 C 0.02 0.46 1.98 -94.08 -0.19 0.28 16 14 H 0.07 1.52 4.72 -51.93 -0.25 1.28 16 15 C -0.51 -13.08 8.01 -34.43 -0.28 -13.35 16 16 H 0.08 2.35 8.06 -52.49 -0.42 1.92 16 17 C 0.09 2.29 5.47 -17.82 -0.10 2.20 16 18 N -0.88 -25.16 13.96 55.43 0.77 -24.38 16 19 Si 0.86 19.96 27.41 -169.99 -4.66 15.30 16 20 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.26 -5.58 6.26 56.52 0.35 -5.23 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 C -0.02 -0.55 4.30 -104.63 -0.45 -1.00 16 24 C -0.07 -1.57 8.31 -39.59 -0.33 -1.90 16 25 C -0.13 -2.49 10.05 -39.58 -0.40 -2.89 16 26 C -0.14 -2.56 10.05 -39.58 -0.40 -2.96 16 27 C -0.13 -2.36 10.05 -39.58 -0.40 -2.76 16 28 C -0.14 -2.81 9.67 -39.58 -0.38 -3.20 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.87 6.19 -51.93 -0.32 0.55 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.07 1.18 5.55 -51.93 -0.29 0.89 16 36 H 0.05 0.60 8.11 -51.93 -0.42 0.18 16 37 H 0.06 0.78 7.67 -51.93 -0.40 0.38 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.08 1.06 7.74 -51.93 -0.40 0.66 16 40 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.37 3.94 9.12 45.56 0.42 4.36 16 43 H 0.41 7.47 6.89 -40.82 -0.28 7.19 16 44 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 45 H 0.12 2.66 7.89 -52.48 -0.41 2.24 16 46 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 47 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 48 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 49 H 0.11 2.03 7.95 -52.49 -0.42 1.61 16 LS Contribution 386.55 15.07 5.83 5.83 Total: -1.00 -30.30 386.55 -8.10 -38.40 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: -7.31 Total: 17.25 kcal Atomic # 6 Polarization: -15.73 SS G_CDS: -2.22 Total: -17.95 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.63 Total: -37.28 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.37 Total: -21.56 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -4.66 Total: 15.30 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.30 -8.10 -38.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412722690.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.230 kcal (2) G-P(sol) polarization free energy of solvation -30.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds