Wall clock time and date at job start Tue Mar 31 2020 13:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47375 * 2 1 4 4 C 1.52992 * 109.47261 * 185.04900 * 3 2 1 5 5 H 1.09005 * 109.47409 * 184.83674 * 4 3 2 6 6 C 1.53004 * 109.47151 * 64.83709 * 4 3 2 7 7 C 1.52998 * 109.47180 * 65.00249 * 6 4 3 8 8 O 1.42894 * 109.47172 * 180.02562 * 7 6 4 9 9 C 1.53005 * 109.47105 * 304.83547 * 4 3 2 10 10 N 1.46497 * 109.47284 * 296.20821 * 9 4 3 11 11 C 1.34779 * 119.99968 * 184.78143 * 10 9 4 12 12 O 1.21280 * 119.99911 * 359.97438 * 11 10 9 13 13 C 1.50699 * 119.99838 * 180.02562 * 11 10 9 14 14 H 1.08999 * 109.47684 * 59.99220 * 13 11 10 15 15 C 1.50708 * 109.47041 * 299.99562 * 13 11 10 16 16 H 1.08000 * 119.99673 * 325.23236 * 15 13 11 17 17 C 1.37871 * 119.99910 * 145.23197 * 15 13 11 18 18 N 1.31520 * 120.00005 * 184.95834 * 17 15 13 19 19 Si 1.86793 * 120.00106 * 4.96200 * 17 15 13 20 20 H 1.48497 * 109.47344 * 84.85452 * 19 17 15 21 21 H 1.48508 * 109.47136 * 204.85115 * 19 17 15 22 22 H 1.48497 * 109.47510 * 324.84854 * 19 17 15 23 23 C 1.50699 * 109.46839 * 180.02562 * 13 11 10 24 24 C 1.38233 * 120.00371 * 65.40001 * 23 13 11 25 25 C 1.38239 * 119.99951 * 179.81085 * 24 23 13 26 26 C 1.38236 * 119.99889 * 0.39176 * 25 24 23 27 27 C 1.38243 * 120.00262 * 359.86202 * 26 25 24 28 28 C 1.38236 * 119.99721 * 359.95073 * 27 26 25 29 29 H 1.08993 * 109.47132 * 300.00455 * 1 2 3 30 30 H 1.08999 * 109.46856 * 60.00222 * 1 2 3 31 31 H 1.08995 * 109.47105 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47627 * 239.99589 * 2 1 3 33 33 H 1.08999 * 109.46856 * 119.99778 * 2 1 3 34 34 H 1.08996 * 109.46949 * 65.04797 * 3 2 1 35 35 H 1.08996 * 109.46630 * 305.04730 * 3 2 1 36 36 H 1.09004 * 109.46765 * 185.00396 * 6 4 3 37 37 H 1.09000 * 109.46828 * 304.99762 * 6 4 3 38 38 H 1.09002 * 109.46663 * 299.99623 * 7 6 4 39 39 H 1.09001 * 109.47192 * 59.99716 * 7 6 4 40 40 H 0.96698 * 114.00102 * 179.97438 * 8 7 6 41 41 H 1.09000 * 109.47156 * 176.20519 * 9 4 3 42 42 H 1.09000 * 109.46947 * 56.21004 * 9 4 3 43 43 H 0.96996 * 119.99652 * 4.77345 * 10 9 4 44 44 H 0.96992 * 120.00083 * 179.97438 * 18 17 15 45 45 H 1.08000 * 120.00159 * 359.97438 * 24 23 13 46 46 H 1.08000 * 120.00191 * 180.22910 * 25 24 23 47 47 H 1.07993 * 120.00136 * 179.83298 * 26 25 24 48 48 H 1.07997 * 120.00006 * 179.97438 * 27 26 25 49 49 H 1.08000 * 120.00134 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5647 1.4444 -0.1269 5 1 3.9353 2.4659 -0.0407 6 6 3.9639 0.8702 -1.4878 7 6 3.4642 1.7963 -2.5985 8 8 3.8365 1.2597 -3.8695 9 6 4.1702 0.5866 0.9860 10 7 3.8640 1.1870 2.2867 11 6 4.3795 0.6549 3.4127 12 8 5.0964 -0.3212 3.3490 13 6 4.0641 1.2723 4.7507 14 1 2.9871 1.2484 4.9172 15 6 4.5437 2.7009 4.7704 16 1 5.4457 2.9749 4.2435 17 6 3.8311 3.6578 5.4612 18 7 4.1939 4.9205 5.3988 19 14 2.3503 3.1611 6.4858 20 1 2.8029 2.7266 7.8317 21 1 1.4318 4.3201 6.6227 22 1 1.6388 2.0420 5.8176 23 6 4.7586 0.4947 5.8389 24 6 6.1393 0.4775 5.9026 25 6 6.7763 -0.2326 6.9031 26 6 6.0326 -0.9321 7.8350 27 6 4.6518 -0.9192 7.7682 28 6 4.0148 -0.2059 6.7700 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.7524 1.9296 0.9317 35 1 1.6048 1.9817 -0.8413 36 1 5.0494 0.7888 -1.5435 37 1 3.5187 -0.1172 -1.6102 38 1 2.3786 1.8776 -2.5427 39 1 3.9093 2.7837 -2.4760 40 1 3.5512 1.7962 -4.6217 41 1 5.2511 0.5328 0.8560 42 1 3.7484 -0.4175 0.9410 43 1 3.2904 1.9676 2.3376 44 1 3.6923 5.5938 5.8844 45 1 6.7205 1.0210 5.1723 46 1 7.8550 -0.2430 6.9551 47 1 6.5302 -1.4891 8.6151 48 1 4.0709 -1.4660 8.4961 49 1 2.9362 -0.1955 6.7180 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417666756.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:23 Heat of formation + Delta-G solvation = -92.453534 kcal Electronic energy + Delta-G solvation = -27375.214055 eV Core-core repulsion = 23686.973771 eV Total energy + Delta-G solvation = -3688.240285 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.49032 -38.51796 -37.59804 -36.39233 -33.64847 -33.45229 -32.20153 -31.48853 -30.11170 -28.60826 -27.58337 -26.07783 -23.73211 -22.82186 -22.54558 -21.82982 -20.86845 -19.37895 -19.01378 -17.53168 -17.14060 -16.29185 -16.09368 -15.97452 -15.40754 -15.19207 -14.59557 -14.40378 -14.35082 -14.15587 -13.66484 -13.56291 -13.43348 -12.92818 -12.70765 -12.66840 -12.53567 -12.22548 -11.93201 -11.91044 -11.85619 -11.76621 -11.54716 -11.19221 -11.13547 -10.99904 -10.58458 -10.53198 -10.45041 -10.31187 -10.21661 -9.98102 -9.91425 -9.52353 -8.97661 -8.67801 -8.34643 -8.11433 -7.78949 -6.31105 -4.34916 2.17414 2.23896 3.14030 3.22018 3.27132 3.62464 3.80549 4.21330 4.23892 4.66873 4.67509 4.75988 4.86216 5.00689 5.02670 5.13261 5.20553 5.37038 5.41919 5.43658 5.56884 5.61827 5.65858 5.71347 5.74728 5.76867 5.85542 5.91952 5.92394 5.97719 6.00127 6.12926 6.26127 6.29506 6.29761 6.32090 6.35045 6.44451 6.48871 6.76665 6.87476 7.15699 7.19195 7.27426 7.29817 7.41875 7.61280 7.82085 8.20252 8.33331 8.69616 9.15847 9.27251 10.79889 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.012658 B = 0.003691 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.593369 B = 7584.484852 C = 8214.001894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.131 4.131 3 C -0.119 4.119 4 C -0.098 4.098 5 H 0.082 0.918 6 C -0.114 4.114 7 C 0.075 3.925 8 O -0.577 6.577 9 C 0.126 3.874 10 N -0.726 5.726 11 C 0.535 3.465 12 O -0.563 6.563 13 C 0.018 3.982 14 H 0.072 0.928 15 C -0.509 4.509 16 H 0.082 0.918 17 C 0.085 3.915 18 N -0.884 5.884 19 Si 0.865 3.135 20 H -0.267 1.267 21 H -0.286 1.286 22 H -0.262 1.262 23 C -0.026 4.026 24 C -0.073 4.073 25 C -0.129 4.129 26 C -0.144 4.144 27 C -0.129 4.129 28 C -0.138 4.138 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.048 0.952 39 H 0.046 0.954 40 H 0.377 0.623 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.405 0.595 44 H 0.268 0.732 45 H 0.117 0.883 46 H 0.111 0.889 47 H 0.108 0.892 48 H 0.109 0.891 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.534 -5.951 -10.377 13.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.168 4.168 3 C -0.156 4.156 4 C -0.117 4.117 5 H 0.100 0.900 6 C -0.152 4.152 7 C -0.003 4.003 8 O -0.382 6.382 9 C 0.002 3.998 10 N -0.378 5.378 11 C 0.324 3.676 12 O -0.442 6.442 13 C -0.004 4.004 14 H 0.090 0.910 15 C -0.546 4.546 16 H 0.100 0.900 17 C -0.119 4.119 18 N -0.519 5.519 19 Si 0.693 3.307 20 H -0.192 1.192 21 H -0.212 1.212 22 H -0.187 1.187 23 C -0.027 4.027 24 C -0.091 4.091 25 C -0.147 4.147 26 C -0.162 4.162 27 C -0.147 4.147 28 C -0.156 4.156 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.224 0.776 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.240 0.760 44 H 0.078 0.922 45 H 0.135 0.865 46 H 0.129 0.871 47 H 0.127 0.873 48 H 0.127 0.873 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.800 -6.902 -9.976 13.046 hybrid contribution -1.279 0.866 0.399 1.596 sum -6.079 -6.036 -9.577 12.849 Atomic orbital electron populations 1.21762 0.96168 1.01351 1.01579 1.21666 0.95557 0.97092 1.02462 1.21702 0.94394 0.97240 1.02308 1.21337 0.96056 1.00588 0.93699 0.89966 1.21493 1.02042 0.99629 0.91992 1.22270 0.98402 0.96337 0.83290 1.86472 1.82256 1.53591 1.15904 1.21242 0.99903 0.96344 0.82328 1.45854 1.52993 1.33752 1.05235 1.21082 0.78135 0.81993 0.86434 1.90594 1.38204 1.27428 1.87950 1.18587 0.98192 0.96273 0.87331 0.91001 1.20536 1.12283 0.87619 1.34196 0.90008 1.24968 0.97039 0.94624 0.95290 1.69864 1.40385 1.00417 1.41263 0.87028 0.83117 0.78304 0.82299 1.19181 1.21172 1.18706 1.20079 0.94048 0.92738 0.95880 1.20841 0.94374 0.96907 0.96957 1.21035 0.99057 0.98713 0.95940 1.20857 0.94040 1.01535 0.99749 1.20881 0.94628 1.00474 0.98708 1.20975 0.99044 0.98875 0.96687 0.92677 0.93132 0.93036 0.91847 0.91312 0.91295 0.91804 0.90990 0.90689 0.93344 0.93598 0.77635 0.91982 0.91933 0.76013 0.92154 0.86536 0.87138 0.87347 0.87295 0.87461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.91 37.16 0.37 -1.09 16 2 C -0.13 -1.38 5.15 -26.73 -0.14 -1.52 16 3 C -0.12 -1.25 4.65 -26.73 -0.12 -1.38 16 4 C -0.10 -1.12 2.24 -90.62 -0.20 -1.32 16 5 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 6 C -0.11 -1.21 4.92 -26.73 -0.13 -1.34 16 7 C 0.07 0.69 6.81 37.16 0.25 0.95 16 8 O -0.58 -5.67 13.66 -35.23 -0.48 -6.16 16 9 C 0.13 1.86 4.72 -4.04 -0.02 1.84 16 10 N -0.73 -12.81 5.26 -60.29 -0.32 -13.13 16 11 C 0.53 11.49 7.04 -10.99 -0.08 11.41 16 12 O -0.56 -13.34 15.39 5.56 0.09 -13.25 16 13 C 0.02 0.40 1.89 -94.07 -0.18 0.22 16 14 H 0.07 1.59 4.89 -51.93 -0.25 1.34 16 15 C -0.51 -12.91 8.04 -34.44 -0.28 -13.19 16 16 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 17 C 0.09 2.23 5.47 -17.82 -0.10 2.13 16 18 N -0.88 -24.66 13.96 55.43 0.77 -23.89 16 19 Si 0.87 19.78 27.20 -169.99 -4.62 15.15 16 20 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 22 H -0.26 -5.55 6.06 56.52 0.34 -5.21 16 23 C -0.03 -0.59 4.07 -104.62 -0.43 -1.02 16 24 C -0.07 -1.60 8.27 -39.58 -0.33 -1.93 16 25 C -0.13 -2.48 10.05 -39.58 -0.40 -2.87 16 26 C -0.14 -2.55 10.05 -39.58 -0.40 -2.95 16 27 C -0.13 -2.36 10.05 -39.58 -0.40 -2.75 16 28 C -0.14 -2.83 9.47 -39.58 -0.38 -3.21 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.64 6.24 -51.93 -0.32 0.32 16 33 H 0.07 0.84 6.57 -51.93 -0.34 0.50 16 34 H 0.07 0.79 7.13 -51.93 -0.37 0.42 16 35 H 0.06 0.59 6.35 -51.93 -0.33 0.26 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.81 6.24 -51.93 -0.32 0.48 16 38 H 0.05 0.40 6.47 -51.93 -0.34 0.07 16 39 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.38 1.94 9.12 45.56 0.42 2.36 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.06 0.93 6.24 -51.93 -0.32 0.60 16 43 H 0.40 6.83 7.35 -40.82 -0.30 6.53 16 44 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 45 H 0.12 2.66 7.91 -52.49 -0.42 2.24 16 46 H 0.11 1.81 8.06 -52.49 -0.42 1.38 16 47 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 48 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 49 H 0.11 2.04 7.95 -52.49 -0.42 1.63 16 LS Contribution 388.53 15.07 5.86 5.86 Total: -1.00 -30.95 388.53 -8.82 -39.77 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: -7.17 Total: 13.66 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: -2.95 Total: -18.02 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: 0.46 Total: -37.02 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.40 Total: -19.41 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -4.62 Total: 15.15 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.95 -8.82 -39.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417666756.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.682 kcal (2) G-P(sol) polarization free energy of solvation -30.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds