Wall clock time and date at job start Tue Mar 31 2020 13:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47216 * 2 1 4 4 C 1.52994 * 109.47261 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.47429 * 305.00314 * 4 3 2 6 6 C 1.52995 * 109.47275 * 64.99896 * 4 3 2 7 7 C 1.53006 * 109.46925 * 64.34384 * 6 4 3 8 8 O 1.42904 * 109.47224 * 185.29061 * 7 6 4 9 9 C 1.53003 * 109.47196 * 185.00359 * 4 3 2 10 10 N 1.46500 * 109.47287 * 175.79467 * 9 4 3 11 11 C 1.34770 * 120.00257 * 174.81194 * 10 9 4 12 12 O 1.21284 * 119.99710 * 0.02562 * 11 10 9 13 13 C 1.50697 * 120.00349 * 179.97438 * 11 10 9 14 14 H 1.09002 * 109.47033 * 59.99706 * 13 11 10 15 15 C 1.50703 * 109.46881 * 300.00216 * 13 11 10 16 16 H 1.07990 * 120.00523 * 324.92521 * 15 13 11 17 17 C 1.37883 * 119.99757 * 144.92402 * 15 13 11 18 18 N 1.31516 * 119.99998 * 5.24283 * 17 15 13 19 19 Si 1.86800 * 120.00094 * 185.23831 * 17 15 13 20 20 H 1.48502 * 109.46947 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47112 * 120.00253 * 19 17 15 22 22 H 1.48505 * 109.47199 * 240.00503 * 19 17 15 23 23 C 1.50698 * 109.47257 * 180.02562 * 13 11 10 24 24 C 1.38241 * 120.00145 * 65.99018 * 23 13 11 25 25 C 1.38226 * 120.00122 * 179.80909 * 24 23 13 26 26 C 1.38235 * 120.00017 * 0.39412 * 25 24 23 27 27 C 1.38234 * 119.99963 * 359.85874 * 26 25 24 28 28 C 1.38233 * 120.00080 * 359.95488 * 27 26 25 29 29 H 1.08997 * 109.46997 * 299.99647 * 1 2 3 30 30 H 1.09000 * 109.46777 * 59.99830 * 1 2 3 31 31 H 1.08997 * 109.46651 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46964 * 240.00343 * 2 1 3 33 33 H 1.08997 * 109.46994 * 120.00640 * 2 1 3 34 34 H 1.08997 * 109.46849 * 60.00263 * 3 2 1 35 35 H 1.08996 * 109.47222 * 300.00537 * 3 2 1 36 36 H 1.09006 * 109.47237 * 184.33824 * 6 4 3 37 37 H 1.09000 * 109.47568 * 304.34432 * 6 4 3 38 38 H 1.08999 * 109.46796 * 305.29249 * 7 6 4 39 39 H 1.08998 * 109.47250 * 65.28950 * 7 6 4 40 40 H 0.96697 * 113.99717 * 179.97438 * 8 7 6 41 41 H 1.09001 * 109.47314 * 55.79571 * 9 4 3 42 42 H 1.09003 * 109.46889 * 295.79321 * 9 4 3 43 43 H 0.97003 * 119.99940 * 354.81879 * 10 9 4 44 44 H 0.96997 * 120.00228 * 180.02562 * 18 17 15 45 45 H 1.08007 * 119.99622 * 359.97438 * 24 23 13 46 46 H 1.07996 * 120.00323 * 180.22340 * 25 24 23 47 47 H 1.08002 * 120.00168 * 179.82903 * 26 25 24 48 48 H 1.08007 * 120.00160 * 179.97438 * 27 26 25 49 49 H 1.08005 * 120.00189 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9338 0.8529 0.8409 6 6 4.0795 0.8331 -1.3082 7 6 3.6601 1.7205 -2.4819 8 8 4.0278 1.0904 -3.7107 9 6 4.0801 2.8795 0.1252 10 7 5.5416 2.8719 0.2256 11 6 6.2222 4.0351 0.2399 12 8 5.6246 5.0882 0.1701 13 6 7.7255 4.0273 0.3437 14 1 8.1456 3.4869 -0.5046 15 6 8.1370 3.3489 1.6250 16 1 7.5333 3.4609 2.5134 17 6 9.2844 2.5852 1.6630 18 7 10.0739 2.5319 0.6125 19 14 9.7174 1.6262 3.2064 20 1 8.6740 1.8522 4.2386 21 1 9.7902 0.1782 2.8854 22 1 11.0321 2.0857 3.7221 23 6 8.2367 5.4450 0.3399 24 6 7.9389 6.2900 1.3927 25 6 8.4111 7.5891 1.3910 26 6 9.1742 8.0458 0.3327 27 6 9.4676 7.2025 -0.7225 28 6 8.9986 5.9021 -0.7191 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.6768 1.9562 0.8900 35 1 1.6767 1.9563 -0.8899 36 1 5.1668 0.7622 -1.2767 37 1 3.6540 -0.1624 -1.4353 38 1 2.5805 1.8682 -2.4581 39 1 4.1606 2.6858 -2.4046 40 1 3.7915 1.5981 -4.4991 41 1 3.6569 3.3384 1.0188 42 1 3.7792 3.4500 -0.7535 43 1 6.0196 2.0297 0.2816 44 1 10.8809 1.9943 0.6391 45 1 7.3396 5.9342 2.2177 46 1 8.1815 8.2482 2.2152 47 1 9.5408 9.0617 0.3301 48 1 10.0634 7.5594 -1.5496 49 1 9.2282 5.2430 -1.5433 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417666757.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:26 Heat of formation + Delta-G solvation = -96.904765 kcal Electronic energy + Delta-G solvation = -27320.852588 eV Core-core repulsion = 23632.419284 eV Total energy + Delta-G solvation = -3688.433305 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.36720 -38.39342 -37.42359 -36.10456 -33.97436 -33.62112 -31.80606 -31.04514 -29.90690 -28.41314 -27.50212 -25.72831 -23.97138 -23.67171 -21.80633 -21.55313 -20.65710 -19.45163 -18.98348 -17.63004 -16.78062 -16.16916 -15.89710 -15.73197 -15.33207 -15.04302 -14.51009 -14.41939 -14.18866 -13.83962 -13.69575 -13.68601 -13.32525 -12.96658 -12.70624 -12.46735 -12.24189 -12.16223 -11.99268 -11.78620 -11.63079 -11.55572 -11.45792 -11.11599 -11.04654 -10.96998 -10.73895 -10.54355 -10.38527 -10.31113 -10.23584 -9.98215 -9.80324 -9.39602 -8.77528 -8.59448 -8.28573 -7.91599 -7.57323 -6.26470 -4.32821 2.40912 2.43706 3.18121 3.27564 3.30670 3.74503 4.00039 4.24103 4.28934 4.68237 4.74149 4.83079 4.89249 4.99623 5.10365 5.14992 5.22612 5.38429 5.44938 5.52870 5.63033 5.63646 5.69541 5.74552 5.79196 5.82242 5.88921 5.92247 5.99432 6.04539 6.11550 6.19605 6.23932 6.29317 6.32235 6.44193 6.53097 6.63429 6.88526 7.00511 7.17958 7.26157 7.39791 7.47887 7.60755 7.64054 7.78309 7.98478 8.09880 8.41065 8.71790 9.26557 9.33865 10.81833 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.011002 B = 0.003823 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2544.381184 B = 7321.821203 C = 8386.420400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.115 4.115 4 C -0.097 4.097 5 H 0.084 0.916 6 C -0.116 4.116 7 C 0.071 3.929 8 O -0.576 6.576 9 C 0.122 3.878 10 N -0.728 5.728 11 C 0.527 3.473 12 O -0.570 6.570 13 C 0.050 3.950 14 H 0.088 0.912 15 C -0.514 4.514 16 H 0.063 0.937 17 C 0.074 3.926 18 N -0.877 5.877 19 Si 0.897 3.103 20 H -0.271 1.271 21 H -0.281 1.281 22 H -0.282 1.282 23 C -0.008 4.008 24 C -0.085 4.085 25 C -0.135 4.135 26 C -0.150 4.150 27 C -0.132 4.132 28 C -0.118 4.118 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.045 0.955 39 H 0.051 0.949 40 H 0.376 0.624 41 H 0.057 0.943 42 H 0.062 0.938 43 H 0.405 0.595 44 H 0.266 0.734 45 H 0.110 0.890 46 H 0.105 0.895 47 H 0.104 0.896 48 H 0.106 0.894 49 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.496 -2.806 -3.762 13.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.153 4.153 4 C -0.116 4.116 5 H 0.103 0.897 6 C -0.153 4.153 7 C -0.006 4.006 8 O -0.381 6.381 9 C -0.003 4.003 10 N -0.381 5.381 11 C 0.316 3.684 12 O -0.449 6.449 13 C 0.029 3.971 14 H 0.106 0.894 15 C -0.552 4.552 16 H 0.081 0.919 17 C -0.131 4.131 18 N -0.512 5.512 19 Si 0.724 3.276 20 H -0.195 1.195 21 H -0.207 1.207 22 H -0.208 1.208 23 C -0.009 4.009 24 C -0.104 4.104 25 C -0.153 4.153 26 C -0.168 4.168 27 C -0.150 4.150 28 C -0.137 4.137 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.222 0.778 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.240 0.760 44 H 0.076 0.924 45 H 0.128 0.872 46 H 0.124 0.876 47 H 0.122 0.878 48 H 0.124 0.876 49 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -12.528 -2.598 -3.465 13.255 hybrid contribution 0.467 -0.445 0.557 0.853 sum -12.061 -3.043 -2.907 12.774 Atomic orbital electron populations 1.21772 0.96088 1.01398 1.01684 1.21586 0.95577 0.96889 1.02339 1.21648 0.94160 0.97085 1.02438 1.21399 0.95709 0.96471 0.98037 0.89733 1.21537 1.02293 0.99198 0.92316 1.22371 0.98068 0.96004 0.84177 1.86463 1.85184 1.50524 1.15940 1.21292 0.82202 0.95354 1.01408 1.45916 1.05718 1.09997 1.76476 1.21630 0.91656 0.82335 0.72747 1.90576 1.71821 1.31460 1.51028 1.18120 0.86326 0.91252 1.01430 0.89437 1.20722 1.09407 1.30071 0.94950 0.91907 1.24974 0.95696 0.95971 0.96488 1.69930 1.12891 1.39160 1.29249 0.86454 0.78633 0.79579 0.82960 1.19517 1.20694 1.20817 1.20021 0.93807 0.95144 0.91885 1.20814 0.98576 0.92762 0.98204 1.20943 0.99821 0.96253 0.98285 1.20786 1.01615 0.98850 0.95534 1.20896 1.01224 0.94524 0.98381 1.20985 0.99156 0.94980 0.98541 0.92812 0.92902 0.92949 0.91618 0.91913 0.91543 0.91627 0.90697 0.90944 0.93722 0.93054 0.77751 0.92450 0.91984 0.76018 0.92419 0.87190 0.87648 0.87761 0.87605 0.87065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 37.16 0.37 -0.81 16 2 C -0.13 -1.10 5.69 -26.73 -0.15 -1.25 16 3 C -0.12 -1.10 4.55 -26.73 -0.12 -1.22 16 4 C -0.10 -1.11 2.20 -90.62 -0.20 -1.31 16 5 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 6 C -0.12 -1.39 5.03 -26.73 -0.13 -1.52 16 7 C 0.07 0.84 6.27 37.16 0.23 1.08 16 8 O -0.58 -7.11 13.66 -35.23 -0.48 -7.59 16 9 C 0.12 1.79 4.74 -4.04 -0.02 1.77 16 10 N -0.73 -13.10 5.15 -60.29 -0.31 -13.41 16 11 C 0.53 11.62 7.04 -10.99 -0.08 11.54 16 12 O -0.57 -13.79 15.41 5.55 0.09 -13.71 16 13 C 0.05 1.18 2.38 -94.08 -0.22 0.96 16 14 H 0.09 2.21 7.13 -51.93 -0.37 1.84 16 15 C -0.51 -12.82 7.47 -34.44 -0.26 -13.08 16 16 H 0.06 1.59 7.82 -52.49 -0.41 1.18 16 17 C 0.07 1.86 5.45 -17.82 -0.10 1.77 16 18 N -0.88 -23.18 12.84 55.43 0.71 -22.47 16 19 Si 0.90 19.87 29.54 -169.99 -5.02 14.85 16 20 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 21 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 C -0.01 -0.18 4.30 -104.62 -0.45 -0.63 16 24 C -0.09 -1.95 8.30 -39.58 -0.33 -2.28 16 25 C -0.13 -2.71 10.05 -39.59 -0.40 -3.11 16 26 C -0.15 -2.84 10.05 -39.58 -0.40 -3.24 16 27 C -0.13 -2.60 10.05 -39.58 -0.40 -3.00 16 28 C -0.12 -2.63 9.67 -39.58 -0.38 -3.02 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.59 6.47 -51.93 -0.34 0.25 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.61 6.22 -51.93 -0.32 0.29 16 36 H 0.07 1.02 7.36 -51.93 -0.38 0.64 16 37 H 0.07 0.82 6.37 -51.93 -0.33 0.49 16 38 H 0.04 0.46 6.21 -51.93 -0.32 0.13 16 39 H 0.05 0.69 6.58 -51.93 -0.34 0.34 16 40 H 0.38 2.98 9.12 45.56 0.42 3.39 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.06 0.94 6.23 -51.93 -0.32 0.61 16 43 H 0.40 7.05 7.69 -40.82 -0.31 6.73 16 44 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 45 H 0.11 2.54 7.90 -52.48 -0.41 2.13 16 46 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 47 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 48 H 0.11 1.76 8.06 -52.48 -0.42 1.34 16 49 H 0.11 2.39 7.96 -52.48 -0.42 1.97 16 LS Contribution 393.57 15.07 5.93 5.93 Total: -1.00 -30.08 393.57 -9.35 -39.44 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: -7.23 Total: 14.30 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -3.03 Total: -17.34 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: 0.40 Total: -35.88 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.40 Total: -21.30 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.08 -9.35 -39.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417666757.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.468 kcal (2) G-P(sol) polarization free energy of solvation -30.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds