Wall clock time and date at job start Tue Mar 31 2020 13:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47216 * 2 1 4 4 C 1.52994 * 109.47261 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.47429 * 305.00314 * 4 3 2 6 6 C 1.52995 * 109.47275 * 64.99896 * 4 3 2 7 7 C 1.53006 * 109.46925 * 64.34384 * 6 4 3 8 8 O 1.42904 * 109.47224 * 185.29061 * 7 6 4 9 9 C 1.53003 * 109.47196 * 185.00359 * 4 3 2 10 10 N 1.46500 * 109.47287 * 175.79467 * 9 4 3 11 11 C 1.34770 * 120.00257 * 174.81194 * 10 9 4 12 12 O 1.21284 * 119.99710 * 0.02562 * 11 10 9 13 13 C 1.50697 * 120.00349 * 179.97438 * 11 10 9 14 14 H 1.09002 * 109.47033 * 59.99706 * 13 11 10 15 15 C 1.50703 * 109.46881 * 300.00216 * 13 11 10 16 16 H 1.07990 * 120.00523 * 324.92521 * 15 13 11 17 17 C 1.37883 * 119.99757 * 144.92402 * 15 13 11 18 18 N 1.31516 * 119.99998 * 5.24283 * 17 15 13 19 19 Si 1.86800 * 120.00094 * 185.23831 * 17 15 13 20 20 H 1.48502 * 109.46947 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47112 * 120.00253 * 19 17 15 22 22 H 1.48505 * 109.47199 * 240.00503 * 19 17 15 23 23 C 1.50698 * 109.47257 * 180.02562 * 13 11 10 24 24 C 1.38241 * 120.00145 * 65.99018 * 23 13 11 25 25 C 1.38226 * 120.00122 * 179.80909 * 24 23 13 26 26 C 1.38235 * 120.00017 * 0.39412 * 25 24 23 27 27 C 1.38234 * 119.99963 * 359.85874 * 26 25 24 28 28 C 1.38233 * 120.00080 * 359.95488 * 27 26 25 29 29 H 1.08997 * 109.46997 * 299.99647 * 1 2 3 30 30 H 1.09000 * 109.46777 * 59.99830 * 1 2 3 31 31 H 1.08997 * 109.46651 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46964 * 240.00343 * 2 1 3 33 33 H 1.08997 * 109.46994 * 120.00640 * 2 1 3 34 34 H 1.08997 * 109.46849 * 60.00263 * 3 2 1 35 35 H 1.08996 * 109.47222 * 300.00537 * 3 2 1 36 36 H 1.09006 * 109.47237 * 184.33824 * 6 4 3 37 37 H 1.09000 * 109.47568 * 304.34432 * 6 4 3 38 38 H 1.08999 * 109.46796 * 305.29249 * 7 6 4 39 39 H 1.08998 * 109.47250 * 65.28950 * 7 6 4 40 40 H 0.96697 * 113.99717 * 179.97438 * 8 7 6 41 41 H 1.09001 * 109.47314 * 55.79571 * 9 4 3 42 42 H 1.09003 * 109.46889 * 295.79321 * 9 4 3 43 43 H 0.97003 * 119.99940 * 354.81879 * 10 9 4 44 44 H 0.96997 * 120.00228 * 180.02562 * 18 17 15 45 45 H 1.08007 * 119.99622 * 359.97438 * 24 23 13 46 46 H 1.07996 * 120.00323 * 180.22340 * 25 24 23 47 47 H 1.08002 * 120.00168 * 179.82903 * 26 25 24 48 48 H 1.08007 * 120.00160 * 179.97438 * 27 26 25 49 49 H 1.08005 * 120.00189 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9338 0.8529 0.8409 6 6 4.0795 0.8331 -1.3082 7 6 3.6601 1.7205 -2.4819 8 8 4.0278 1.0904 -3.7107 9 6 4.0801 2.8795 0.1252 10 7 5.5416 2.8719 0.2256 11 6 6.2222 4.0351 0.2399 12 8 5.6246 5.0882 0.1701 13 6 7.7255 4.0273 0.3437 14 1 8.1456 3.4869 -0.5046 15 6 8.1370 3.3489 1.6250 16 1 7.5333 3.4609 2.5134 17 6 9.2844 2.5852 1.6630 18 7 10.0739 2.5319 0.6125 19 14 9.7174 1.6262 3.2064 20 1 8.6740 1.8522 4.2386 21 1 9.7902 0.1782 2.8854 22 1 11.0321 2.0857 3.7221 23 6 8.2367 5.4450 0.3399 24 6 7.9389 6.2900 1.3927 25 6 8.4111 7.5891 1.3910 26 6 9.1742 8.0458 0.3327 27 6 9.4676 7.2025 -0.7225 28 6 8.9986 5.9021 -0.7191 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.6768 1.9562 0.8900 35 1 1.6767 1.9563 -0.8899 36 1 5.1668 0.7622 -1.2767 37 1 3.6540 -0.1624 -1.4353 38 1 2.5805 1.8682 -2.4581 39 1 4.1606 2.6858 -2.4046 40 1 3.7915 1.5981 -4.4991 41 1 3.6569 3.3384 1.0188 42 1 3.7792 3.4500 -0.7535 43 1 6.0196 2.0297 0.2816 44 1 10.8809 1.9943 0.6391 45 1 7.3396 5.9342 2.2177 46 1 8.1815 8.2482 2.2152 47 1 9.5408 9.0617 0.3301 48 1 10.0634 7.5594 -1.5496 49 1 9.2282 5.2430 -1.5433 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417666757.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:25 Heat of formation + Delta-G solvation = -115.258942 kcal Electronic energy + Delta-G solvation = -27321.648485 eV Core-core repulsion = 23632.419284 eV Total energy + Delta-G solvation = -3689.229201 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.95003 -39.71050 -38.86204 -37.07797 -35.51549 -35.16838 -33.02539 -32.72798 -31.53811 -29.63089 -28.91763 -26.97845 -25.54728 -24.85543 -23.22305 -22.81234 -22.04831 -20.98139 -20.13669 -18.67151 -18.59439 -17.73644 -17.55106 -16.80156 -16.70747 -16.28457 -16.25227 -15.76110 -15.46813 -15.28659 -15.09523 -14.58314 -14.57248 -14.22766 -14.04395 -13.98338 -13.88409 -13.47242 -13.29680 -13.12282 -12.93325 -12.83876 -12.75618 -12.61875 -12.32351 -12.18695 -11.94748 -11.91600 -11.72176 -11.57294 -11.36973 -11.27038 -11.25634 -10.75440 -10.69421 -10.41377 -9.83744 -9.56121 -9.25457 -8.21150 -6.33056 0.75468 0.80662 1.40868 1.44450 1.54620 1.96909 2.42630 2.56492 3.08128 3.26644 3.32635 3.71490 3.83591 3.96534 4.20663 4.22183 4.29813 4.32567 4.36260 4.40248 4.42684 4.48458 4.53601 4.55485 4.65129 4.74359 4.74869 4.87040 4.91844 4.97306 5.00489 5.05707 5.10663 5.15470 5.18437 5.21947 5.36433 5.38116 5.44839 5.46097 5.54936 5.64833 5.71689 5.78200 5.83401 5.95391 6.23856 6.40614 6.71477 6.80219 6.85915 7.34331 7.56357 8.87124 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.011002 B = 0.003823 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2544.381184 B = 7321.821203 C = 8386.420400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.110 4.110 4 C -0.084 4.084 5 H 0.087 0.913 6 C -0.114 4.114 7 C 0.074 3.926 8 O -0.593 6.593 9 C 0.121 3.879 10 N -0.717 5.717 11 C 0.525 3.475 12 O -0.594 6.594 13 C 0.051 3.949 14 H 0.063 0.937 15 C -0.515 4.515 16 H 0.053 0.947 17 C 0.034 3.966 18 N -0.906 5.906 19 Si 0.955 3.045 20 H -0.268 1.268 21 H -0.272 1.272 22 H -0.286 1.286 23 C -0.036 4.036 24 C -0.111 4.111 25 C -0.135 4.135 26 C -0.144 4.144 27 C -0.130 4.130 28 C -0.144 4.144 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.052 0.948 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.031 0.969 40 H 0.394 0.606 41 H 0.053 0.947 42 H 0.060 0.940 43 H 0.407 0.593 44 H 0.267 0.733 45 H 0.095 0.905 46 H 0.136 0.864 47 H 0.147 0.853 48 H 0.140 0.860 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.225 -2.429 -3.414 13.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.148 4.148 4 C -0.103 4.103 5 H 0.106 0.894 6 C -0.152 4.152 7 C -0.004 4.004 8 O -0.401 6.401 9 C -0.002 4.002 10 N -0.367 5.367 11 C 0.314 3.686 12 O -0.476 6.476 13 C 0.030 3.970 14 H 0.081 0.919 15 C -0.553 4.553 16 H 0.071 0.929 17 C -0.168 4.168 18 N -0.542 5.542 19 Si 0.781 3.219 20 H -0.192 1.192 21 H -0.197 1.197 22 H -0.212 1.212 23 C -0.037 4.037 24 C -0.130 4.130 25 C -0.153 4.153 26 C -0.162 4.162 27 C -0.147 4.147 28 C -0.162 4.162 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.103 0.897 38 H 0.085 0.915 39 H 0.049 0.951 40 H 0.243 0.757 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.243 0.757 44 H 0.076 0.924 45 H 0.113 0.887 46 H 0.154 0.846 47 H 0.165 0.835 48 H 0.157 0.843 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -13.285 -2.246 -3.129 13.832 hybrid contribution 0.678 -0.494 0.387 0.924 sum -12.607 -2.740 -2.743 13.190 Atomic orbital electron populations 1.21762 0.95192 1.01944 1.01952 1.21559 0.96325 0.95916 1.02328 1.21622 0.92187 0.98074 1.02924 1.21314 0.97188 0.93902 0.97910 0.89444 1.21520 1.00948 1.00004 0.92723 1.22333 0.99085 0.94810 0.84132 1.86416 1.85562 1.51320 1.16850 1.21486 0.79863 0.97796 1.01065 1.45855 1.07292 1.08861 1.74740 1.21366 0.91236 0.83021 0.72989 1.90540 1.72031 1.32468 1.52592 1.18008 0.87485 0.91546 0.99941 0.91894 1.20774 1.09339 1.30182 0.94992 0.92866 1.25612 0.95539 0.96746 0.98938 1.70033 1.13300 1.40029 1.30878 0.85547 0.77914 0.78666 0.79816 1.19199 1.19737 1.21242 1.20127 0.95105 0.95327 0.93155 1.20846 0.99875 0.94361 0.97888 1.21326 0.98986 0.95353 0.99619 1.21270 1.00128 1.00553 0.94223 1.21301 1.00475 0.93327 0.99631 1.21133 1.00117 0.96578 0.98372 0.92614 0.92599 0.92304 0.91737 0.91852 0.91178 0.91076 0.92924 0.89727 0.91508 0.95107 0.75671 0.92819 0.92206 0.75734 0.92410 0.88715 0.84608 0.83482 0.84268 0.87709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 71.98 0.71 -1.30 16 2 C -0.12 -1.90 5.69 30.60 0.17 -1.73 16 3 C -0.11 -1.92 4.55 30.59 0.14 -1.78 16 4 C -0.08 -1.87 2.20 -10.80 -0.02 -1.89 16 5 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 6 C -0.11 -2.70 5.03 30.59 0.15 -2.55 16 7 C 0.07 1.71 6.27 71.98 0.45 2.16 16 8 O -0.59 -14.26 13.66 -148.98 -2.04 -16.30 16 9 C 0.12 3.60 4.74 86.38 0.41 4.01 16 10 N -0.72 -26.73 5.15 -463.06 -2.38 -29.11 16 11 C 0.52 24.19 7.04 87.66 0.62 24.80 16 12 O -0.59 -29.83 15.41 -3.04 -0.05 -29.87 16 13 C 0.05 2.57 2.38 -13.03 -0.03 2.54 16 14 H 0.06 3.39 7.13 -2.39 -0.02 3.37 16 15 C -0.52 -26.58 7.47 25.60 0.19 -26.39 16 16 H 0.05 2.79 7.82 -2.92 -0.02 2.77 16 17 C 0.03 1.73 5.45 84.66 0.46 2.19 16 18 N -0.91 -49.16 12.84 21.45 0.28 -48.89 16 19 Si 0.96 41.20 29.54 68.60 2.03 43.22 16 20 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 21 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 22 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 23 C -0.04 -1.78 4.30 -19.87 -0.09 -1.86 16 24 C -0.11 -5.18 8.30 22.27 0.18 -5.00 16 25 C -0.13 -5.22 10.05 22.27 0.22 -5.00 16 26 C -0.14 -5.05 10.05 22.27 0.22 -4.82 16 27 C -0.13 -4.89 10.05 22.27 0.22 -4.66 16 28 C -0.14 -6.52 9.67 22.27 0.22 -6.31 16 29 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 1.02 6.47 -2.38 -0.02 1.00 16 33 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.07 1.17 6.22 -2.39 -0.01 1.16 16 36 H 0.05 1.47 7.36 -2.38 -0.02 1.45 16 37 H 0.08 1.81 6.37 -2.39 -0.02 1.79 16 38 H 0.07 1.25 6.21 -2.39 -0.01 1.24 16 39 H 0.03 0.84 6.58 -2.39 -0.02 0.82 16 40 H 0.39 5.92 9.12 -74.06 -0.68 5.25 16 41 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.06 1.83 6.23 -2.39 -0.01 1.82 16 43 H 0.41 14.77 7.69 -92.71 -0.71 14.06 16 44 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16 45 H 0.09 4.55 7.90 -2.91 -0.02 4.53 16 46 H 0.14 4.31 8.06 -2.91 -0.02 4.29 16 47 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 48 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 49 H 0.10 4.72 7.96 -2.91 -0.02 4.70 16 Total: -1.00 -66.02 393.57 1.64 -64.38 By element: Atomic # 1 Polarization: 44.59 SS G_CDS: -0.44 Total: 44.15 kcal Atomic # 6 Polarization: -31.82 SS G_CDS: 4.24 Total: -27.58 kcal Atomic # 7 Polarization: -75.89 SS G_CDS: -2.11 Total: -78.00 kcal Atomic # 8 Polarization: -44.09 SS G_CDS: -2.08 Total: -46.17 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.22 kcal Total: -66.02 1.64 -64.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417666757.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.884 kcal (2) G-P(sol) polarization free energy of solvation -66.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds