Wall clock time and date at job start Tue Mar 31 2020 12:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52993 * 109.47336 * 2 1 4 4 C 1.53002 * 109.47171 * 120.00309 * 2 1 3 5 5 C 1.53000 * 109.47062 * 174.99827 * 4 2 1 6 6 C 1.53002 * 109.47062 * 179.97438 * 5 4 2 7 7 H 1.09007 * 109.46699 * 54.99843 * 6 5 4 8 8 C 1.53002 * 109.47083 * 174.99459 * 6 5 4 9 9 O 1.42905 * 109.46732 * 55.00294 * 8 6 5 10 10 N 1.46494 * 109.46844 * 294.99976 * 6 5 4 11 11 C 1.34779 * 119.99666 * 155.00140 * 10 6 5 12 12 O 1.21286 * 120.00448 * 359.97438 * 11 10 6 13 13 C 1.50704 * 120.00094 * 179.97438 * 11 10 6 14 14 H 1.09003 * 109.46907 * 59.99910 * 13 11 10 15 15 C 1.50693 * 109.47047 * 300.00111 * 13 11 10 16 16 H 1.07999 * 120.00150 * 324.87754 * 15 13 11 17 17 C 1.37878 * 120.00241 * 144.87730 * 15 13 11 18 18 N 1.31514 * 119.99866 * 5.19052 * 17 15 13 19 19 Si 1.86802 * 120.00285 * 185.19264 * 17 15 13 20 20 H 1.48490 * 109.47181 * 90.00036 * 19 17 15 21 21 H 1.48500 * 109.47005 * 210.00201 * 19 17 15 22 22 H 1.48500 * 109.47048 * 329.99649 * 19 17 15 23 23 C 1.50700 * 109.47255 * 179.97438 * 13 11 10 24 24 C 1.38225 * 119.99858 * 66.01247 * 23 13 11 25 25 C 1.38235 * 119.99671 * 179.80933 * 24 23 13 26 26 C 1.38237 * 120.00245 * 0.39425 * 25 24 23 27 27 C 1.38229 * 119.99622 * 359.86242 * 26 25 24 28 28 C 1.38229 * 120.00504 * 359.94995 * 27 26 25 29 29 H 1.09004 * 109.46798 * 300.00200 * 1 2 3 30 30 H 1.09004 * 109.47138 * 59.99828 * 1 2 3 31 31 H 1.08993 * 109.47424 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46881 * 240.00308 * 2 1 3 33 33 H 1.09001 * 109.47405 * 179.97438 * 3 2 1 34 34 H 1.08993 * 109.47582 * 299.99937 * 3 2 1 35 35 H 1.09004 * 109.47341 * 60.00132 * 3 2 1 36 36 H 1.08998 * 109.47131 * 54.99964 * 4 2 1 37 37 H 1.08995 * 109.46765 * 294.99618 * 4 2 1 38 38 H 1.08998 * 109.47036 * 60.00078 * 5 4 2 39 39 H 1.09004 * 109.46983 * 299.99791 * 5 4 2 40 40 H 1.08994 * 109.47443 * 295.00228 * 8 6 5 41 41 H 1.09002 * 109.46898 * 174.99488 * 8 6 5 42 42 H 0.96700 * 113.99568 * 179.97438 * 9 8 6 43 43 H 0.96998 * 120.00571 * 334.99557 * 10 6 5 44 44 H 0.96998 * 120.00175 * 179.97438 * 18 17 15 45 45 H 1.08003 * 120.00472 * 359.97438 * 24 23 13 46 46 H 1.08005 * 119.99799 * 180.23253 * 25 24 23 47 47 H 1.08000 * 119.99857 * 179.82886 * 26 25 24 48 48 H 1.08004 * 119.99991 * 179.97438 * 27 26 25 49 49 H 1.08006 * 120.00709 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8311 1.1879 6 6 4.0749 -1.5519 2.4374 7 1 3.5731 -2.5150 2.5315 8 6 5.5842 -1.7726 2.3184 9 8 6.2311 -0.5212 2.0785 10 7 3.7923 -0.7363 3.6211 11 6 3.6715 -1.3213 4.8293 12 8 3.7963 -2.5229 4.9365 13 6 3.3814 -0.4823 6.0471 14 1 2.4342 0.0398 5.9114 15 6 4.4866 0.5240 6.2387 16 1 5.5048 0.2613 5.9924 17 6 4.1980 1.7802 6.7283 18 7 2.9771 2.0672 7.1240 19 14 5.5411 3.0745 6.8296 20 1 5.5791 3.8486 5.5630 21 1 5.2596 3.9924 7.9625 22 1 6.8524 2.4114 7.0440 23 6 3.2950 -1.3714 7.2607 24 6 4.4180 -2.0420 7.7076 25 6 4.3396 -2.8545 8.8232 26 6 3.1362 -3.0028 9.4871 27 6 2.0119 -2.3364 9.0370 28 6 2.0912 -1.5208 7.9238 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8932 -0.5138 -0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6053 -1.7199 1.2951 37 1 1.7516 -0.1584 2.1369 38 1 3.9994 0.1674 1.1420 39 1 3.8531 -1.3941 0.3001 40 1 5.7880 -2.4516 1.4905 41 1 5.9622 -2.2053 3.2447 42 1 7.1921 -0.5854 1.9924 43 1 3.6922 0.2247 3.5354 44 1 2.7741 2.9508 7.4689 45 1 5.3574 -1.9291 7.1867 46 1 5.2180 -3.3756 9.1745 47 1 3.0744 -3.6398 10.3571 48 1 1.0716 -2.4525 9.5555 49 1 1.2128 -0.9997 7.5724 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434189541.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:16 Heat of formation + Delta-G solvation = -96.987503 kcal Electronic energy + Delta-G solvation = -27809.640760 eV Core-core repulsion = 24121.203868 eV Total energy + Delta-G solvation = -3688.436892 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.35759 -38.13155 -37.02424 -36.29680 -34.01184 -33.59170 -31.11864 -30.64169 -29.89683 -28.07824 -27.13399 -27.00341 -23.95447 -23.54280 -21.59170 -21.32463 -20.09004 -19.86169 -19.26654 -17.23271 -16.70237 -16.11899 -15.83207 -15.53154 -15.16868 -14.64430 -14.46089 -14.23420 -14.02656 -13.73390 -13.57104 -13.47507 -12.99840 -12.85829 -12.63081 -12.42539 -12.22990 -12.16059 -11.91618 -11.64155 -11.53618 -11.39029 -11.26772 -11.08851 -10.99733 -10.96593 -10.54537 -10.38090 -10.34724 -10.30746 -10.22837 -9.96640 -9.73491 -9.37496 -8.73027 -8.54809 -8.23389 -7.90576 -7.55749 -6.22638 -4.28093 2.41913 2.44937 3.23032 3.30254 3.33264 3.75764 4.08714 4.32777 4.57738 4.70831 4.88193 4.93240 4.96089 5.13946 5.28836 5.34941 5.43802 5.55581 5.63629 5.72870 5.75268 5.75519 5.81626 5.83000 5.87913 5.92669 5.93821 6.02166 6.12447 6.15682 6.20613 6.27029 6.28901 6.40552 6.51889 6.53645 6.59585 6.65627 6.90152 7.02039 7.20638 7.33265 7.40709 7.49299 7.67964 7.80877 7.83442 8.00267 8.12445 8.49470 8.76029 9.30909 9.38287 10.85689 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.009846 B = 0.004505 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2843.207183 B = 6213.899360 C = 6956.868462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 C -0.150 4.150 4 C -0.117 4.117 5 C -0.120 4.120 6 C 0.149 3.851 7 H 0.091 0.909 8 C 0.065 3.935 9 O -0.563 6.563 10 N -0.714 5.714 11 C 0.528 3.472 12 O -0.573 6.573 13 C 0.051 3.949 14 H 0.087 0.913 15 C -0.509 4.509 16 H 0.062 0.938 17 C 0.073 3.927 18 N -0.879 5.879 19 Si 0.898 3.102 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.273 1.273 23 C -0.007 4.007 24 C -0.085 4.085 25 C -0.135 4.135 26 C -0.150 4.150 27 C -0.132 4.132 28 C -0.118 4.118 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.048 0.952 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.042 0.958 41 H 0.051 0.949 42 H 0.372 0.628 43 H 0.406 0.594 44 H 0.266 0.734 45 H 0.109 0.891 46 H 0.105 0.895 47 H 0.104 0.896 48 H 0.106 0.894 49 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.518 -4.044 -10.803 11.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.208 4.208 4 C -0.154 4.154 5 C -0.158 4.158 6 C 0.043 3.957 7 H 0.108 0.892 8 C -0.014 4.014 9 O -0.367 6.367 10 N -0.366 5.366 11 C 0.317 3.683 12 O -0.453 6.453 13 C 0.030 3.970 14 H 0.105 0.895 15 C -0.547 4.547 16 H 0.080 0.920 17 C -0.131 4.131 18 N -0.514 5.514 19 Si 0.725 3.275 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.197 1.197 23 C -0.008 4.008 24 C -0.103 4.103 25 C -0.153 4.153 26 C -0.168 4.168 27 C -0.150 4.150 28 C -0.136 4.136 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.217 0.783 43 H 0.242 0.758 44 H 0.075 0.925 45 H 0.127 0.873 46 H 0.123 0.877 47 H 0.122 0.878 48 H 0.124 0.876 49 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.185 -4.523 -10.617 11.601 hybrid contribution 1.303 0.991 0.176 1.647 sum 0.118 -3.532 -10.441 11.023 Atomic orbital electron populations 1.21847 0.95572 1.01480 1.01619 1.21097 0.95419 0.96495 0.98309 1.21905 1.01436 0.95889 1.01542 1.21682 0.95253 1.00497 0.98010 1.21795 0.95509 1.02087 0.96410 1.20907 0.92434 0.96232 0.86151 0.89151 1.22654 0.94271 0.85409 0.99064 1.86514 1.23710 1.31220 1.95291 1.45876 1.73336 1.11299 1.06050 1.21642 0.73511 0.88098 0.85005 1.90565 1.52367 1.15972 1.86409 1.18105 1.01375 0.91927 0.85641 0.89524 1.20659 0.92992 0.95805 1.45237 0.92008 1.24959 0.95667 0.98409 0.94103 1.69920 1.19109 1.21787 1.40630 0.86486 0.82046 0.81187 0.77750 1.20315 1.21200 1.19748 1.20029 0.91805 0.92194 0.96735 1.20797 0.98462 0.95696 0.95347 1.20943 0.97045 1.00350 0.96995 1.20779 0.93604 1.01948 1.00487 1.20890 0.97657 0.98842 0.97627 1.20982 0.97677 0.98615 0.96365 0.92513 0.93102 0.92928 0.91715 0.92230 0.93305 0.92406 0.92264 0.91195 0.90222 0.91520 0.93991 0.93105 0.78271 0.75840 0.92455 0.87277 0.87701 0.87790 0.87633 0.87084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.19 37.15 0.34 -1.14 16 2 C -0.09 -1.01 2.92 -90.63 -0.26 -1.27 16 3 C -0.15 -1.62 8.95 37.15 0.33 -1.28 16 4 C -0.12 -1.43 4.57 -26.73 -0.12 -1.56 16 5 C -0.12 -1.51 4.23 -26.73 -0.11 -1.63 16 6 C 0.15 2.28 2.37 -67.93 -0.16 2.12 16 7 H 0.09 1.47 7.58 -51.93 -0.39 1.08 16 8 C 0.07 0.94 6.85 37.16 0.25 1.19 16 9 O -0.56 -7.97 12.83 -35.23 -0.45 -8.42 16 10 N -0.71 -13.20 4.38 -53.80 -0.24 -13.44 16 11 C 0.53 11.64 7.01 -10.98 -0.08 11.57 16 12 O -0.57 -13.71 15.08 5.55 0.08 -13.63 16 13 C 0.05 1.21 2.37 -94.08 -0.22 0.98 16 14 H 0.09 2.20 7.13 -51.93 -0.37 1.83 16 15 C -0.51 -12.87 7.47 -34.44 -0.26 -13.12 16 16 H 0.06 1.60 7.82 -52.49 -0.41 1.19 16 17 C 0.07 1.88 5.45 -17.82 -0.10 1.78 16 18 N -0.88 -23.40 12.84 55.43 0.71 -22.69 16 19 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 20 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 21 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 23 C -0.01 -0.16 4.30 -104.62 -0.45 -0.61 16 24 C -0.08 -1.94 8.30 -39.59 -0.33 -2.27 16 25 C -0.14 -2.72 10.05 -39.58 -0.40 -3.12 16 26 C -0.15 -2.85 10.05 -39.59 -0.40 -3.25 16 27 C -0.13 -2.60 10.05 -39.59 -0.40 -3.00 16 28 C -0.12 -2.63 9.67 -39.58 -0.38 -3.01 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.65 6.56 -51.93 -0.34 0.31 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.98 7.75 -51.93 -0.40 0.58 16 38 H 0.08 1.07 6.15 -51.93 -0.32 0.75 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.37 3.69 9.12 45.56 0.42 4.11 16 43 H 0.41 7.59 8.49 -40.82 -0.35 7.25 16 44 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 45 H 0.11 2.53 7.90 -52.48 -0.41 2.12 16 46 H 0.10 1.81 8.06 -52.48 -0.42 1.39 16 47 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 48 H 0.11 1.76 8.06 -52.48 -0.42 1.34 16 49 H 0.11 2.39 7.96 -52.48 -0.42 1.97 16 LS Contribution 400.12 15.07 6.03 6.03 Total: -1.00 -29.41 400.12 -9.26 -38.66 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: -7.63 Total: 15.82 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: -2.74 Total: -17.61 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.48 Total: -36.12 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.37 Total: -22.05 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -29.41 -9.26 -38.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434189541.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.326 kcal (2) G-P(sol) polarization free energy of solvation -29.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds