Wall clock time and date at job start Tue Mar 31 2020 12:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52993 * 109.47336 * 2 1 4 4 C 1.53002 * 109.47171 * 120.00309 * 2 1 3 5 5 C 1.53000 * 109.47062 * 174.99827 * 4 2 1 6 6 C 1.53002 * 109.47062 * 179.97438 * 5 4 2 7 7 H 1.09007 * 109.46699 * 54.99843 * 6 5 4 8 8 C 1.53002 * 109.47083 * 174.99459 * 6 5 4 9 9 O 1.42905 * 109.46732 * 55.00294 * 8 6 5 10 10 N 1.46494 * 109.46844 * 294.99976 * 6 5 4 11 11 C 1.34779 * 119.99666 * 155.00140 * 10 6 5 12 12 O 1.21286 * 120.00448 * 359.97438 * 11 10 6 13 13 C 1.50704 * 120.00094 * 179.97438 * 11 10 6 14 14 H 1.09003 * 109.46907 * 59.99910 * 13 11 10 15 15 C 1.50693 * 109.47047 * 300.00111 * 13 11 10 16 16 H 1.07999 * 120.00150 * 324.87754 * 15 13 11 17 17 C 1.37878 * 120.00241 * 144.87730 * 15 13 11 18 18 N 1.31514 * 119.99866 * 5.19052 * 17 15 13 19 19 Si 1.86802 * 120.00285 * 185.19264 * 17 15 13 20 20 H 1.48490 * 109.47181 * 90.00036 * 19 17 15 21 21 H 1.48500 * 109.47005 * 210.00201 * 19 17 15 22 22 H 1.48500 * 109.47048 * 329.99649 * 19 17 15 23 23 C 1.50700 * 109.47255 * 179.97438 * 13 11 10 24 24 C 1.38225 * 119.99858 * 66.01247 * 23 13 11 25 25 C 1.38235 * 119.99671 * 179.80933 * 24 23 13 26 26 C 1.38237 * 120.00245 * 0.39425 * 25 24 23 27 27 C 1.38229 * 119.99622 * 359.86242 * 26 25 24 28 28 C 1.38229 * 120.00504 * 359.94995 * 27 26 25 29 29 H 1.09004 * 109.46798 * 300.00200 * 1 2 3 30 30 H 1.09004 * 109.47138 * 59.99828 * 1 2 3 31 31 H 1.08993 * 109.47424 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46881 * 240.00308 * 2 1 3 33 33 H 1.09001 * 109.47405 * 179.97438 * 3 2 1 34 34 H 1.08993 * 109.47582 * 299.99937 * 3 2 1 35 35 H 1.09004 * 109.47341 * 60.00132 * 3 2 1 36 36 H 1.08998 * 109.47131 * 54.99964 * 4 2 1 37 37 H 1.08995 * 109.46765 * 294.99618 * 4 2 1 38 38 H 1.08998 * 109.47036 * 60.00078 * 5 4 2 39 39 H 1.09004 * 109.46983 * 299.99791 * 5 4 2 40 40 H 1.08994 * 109.47443 * 295.00228 * 8 6 5 41 41 H 1.09002 * 109.46898 * 174.99488 * 8 6 5 42 42 H 0.96700 * 113.99568 * 179.97438 * 9 8 6 43 43 H 0.96998 * 120.00571 * 334.99557 * 10 6 5 44 44 H 0.96998 * 120.00175 * 179.97438 * 18 17 15 45 45 H 1.08003 * 120.00472 * 359.97438 * 24 23 13 46 46 H 1.08005 * 119.99799 * 180.23253 * 25 24 23 47 47 H 1.08000 * 119.99857 * 179.82886 * 26 25 24 48 48 H 1.08004 * 119.99991 * 179.97438 * 27 26 25 49 49 H 1.08006 * 120.00709 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8311 1.1879 6 6 4.0749 -1.5519 2.4374 7 1 3.5731 -2.5150 2.5315 8 6 5.5842 -1.7726 2.3184 9 8 6.2311 -0.5212 2.0785 10 7 3.7923 -0.7363 3.6211 11 6 3.6715 -1.3213 4.8293 12 8 3.7963 -2.5229 4.9365 13 6 3.3814 -0.4823 6.0471 14 1 2.4342 0.0398 5.9114 15 6 4.4866 0.5240 6.2387 16 1 5.5048 0.2613 5.9924 17 6 4.1980 1.7802 6.7283 18 7 2.9771 2.0672 7.1240 19 14 5.5411 3.0745 6.8296 20 1 5.5791 3.8486 5.5630 21 1 5.2596 3.9924 7.9625 22 1 6.8524 2.4114 7.0440 23 6 3.2950 -1.3714 7.2607 24 6 4.4180 -2.0420 7.7076 25 6 4.3396 -2.8545 8.8232 26 6 3.1362 -3.0028 9.4871 27 6 2.0119 -2.3364 9.0370 28 6 2.0912 -1.5208 7.9238 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8932 -0.5138 -0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6053 -1.7199 1.2951 37 1 1.7516 -0.1584 2.1369 38 1 3.9994 0.1674 1.1420 39 1 3.8531 -1.3941 0.3001 40 1 5.7880 -2.4516 1.4905 41 1 5.9622 -2.2053 3.2447 42 1 7.1921 -0.5854 1.9924 43 1 3.6922 0.2247 3.5354 44 1 2.7741 2.9508 7.4689 45 1 5.3574 -1.9291 7.1867 46 1 5.2180 -3.3756 9.1745 47 1 3.0744 -3.6398 10.3571 48 1 1.0716 -2.4525 9.5555 49 1 1.2128 -0.9997 7.5724 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434189541.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:15 Heat of formation + Delta-G solvation = -114.304412 kcal Electronic energy + Delta-G solvation = -27810.391678 eV Core-core repulsion = 24121.203868 eV Total energy + Delta-G solvation = -3689.187810 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.98390 -39.62479 -38.38379 -37.33392 -35.49782 -35.33413 -32.92182 -31.98148 -31.53462 -29.37862 -28.60776 -27.98238 -25.80070 -24.67608 -23.22846 -22.83652 -21.46317 -20.94856 -20.76921 -18.69972 -18.37854 -17.69323 -17.52579 -16.94943 -16.31882 -16.15459 -15.97149 -15.77655 -15.42077 -15.05308 -14.98347 -14.56056 -14.40672 -14.16442 -14.08464 -14.00979 -13.73432 -13.44004 -13.26391 -13.14073 -12.92278 -12.79984 -12.75953 -12.43634 -12.31519 -12.20069 -12.06901 -11.94441 -11.66258 -11.47271 -11.38180 -11.30626 -11.25953 -10.88977 -10.67007 -10.36153 -9.77954 -9.55665 -9.24688 -8.20209 -6.30943 0.75860 0.81278 1.41816 1.43273 1.52147 1.99128 2.43393 2.58380 3.08960 3.27778 3.47625 3.67698 3.99199 4.02320 4.21290 4.25225 4.29817 4.30340 4.38978 4.40645 4.47832 4.50784 4.56940 4.65500 4.78407 4.82466 4.85162 4.87867 4.93332 4.96970 4.98214 5.06118 5.11339 5.15789 5.22585 5.29403 5.37545 5.38129 5.45283 5.55524 5.58475 5.65576 5.78142 5.79148 5.85670 5.96909 6.24861 6.41168 6.73311 6.84572 6.91544 7.35730 7.60168 8.87783 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.009846 B = 0.004505 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2843.207183 B = 6213.899360 C = 6956.868462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.090 4.090 3 C -0.150 4.150 4 C -0.115 4.115 5 C -0.107 4.107 6 C 0.141 3.859 7 H 0.081 0.919 8 C 0.072 3.928 9 O -0.576 6.576 10 N -0.703 5.703 11 C 0.527 3.473 12 O -0.595 6.595 13 C 0.052 3.948 14 H 0.062 0.938 15 C -0.510 4.510 16 H 0.049 0.951 17 C 0.033 3.967 18 N -0.905 5.905 19 Si 0.954 3.046 20 H -0.268 1.268 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.035 4.035 24 C -0.110 4.110 25 C -0.135 4.135 26 C -0.144 4.144 27 C -0.129 4.129 28 C -0.143 4.143 29 H 0.043 0.957 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.041 0.959 36 H 0.058 0.942 37 H 0.044 0.956 38 H 0.074 0.926 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.021 0.979 42 H 0.391 0.609 43 H 0.404 0.596 44 H 0.266 0.734 45 H 0.092 0.908 46 H 0.135 0.865 47 H 0.147 0.853 48 H 0.140 0.860 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.031 -4.735 -11.342 12.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.108 4.108 3 C -0.207 4.207 4 C -0.152 4.152 5 C -0.145 4.145 6 C 0.036 3.964 7 H 0.099 0.901 8 C -0.007 4.007 9 O -0.383 6.383 10 N -0.353 5.353 11 C 0.316 3.684 12 O -0.477 6.477 13 C 0.031 3.969 14 H 0.080 0.920 15 C -0.547 4.547 16 H 0.067 0.933 17 C -0.169 4.169 18 N -0.542 5.542 19 Si 0.779 3.221 20 H -0.193 1.193 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.036 4.036 24 C -0.128 4.128 25 C -0.153 4.153 26 C -0.162 4.162 27 C -0.147 4.147 28 C -0.161 4.161 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.099 0.901 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.092 0.908 39 H 0.111 0.889 40 H 0.096 0.904 41 H 0.039 0.961 42 H 0.239 0.761 43 H 0.239 0.761 44 H 0.075 0.925 45 H 0.110 0.890 46 H 0.153 0.847 47 H 0.165 0.835 48 H 0.157 0.843 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.678 -5.207 -11.193 12.364 hybrid contribution 1.141 1.140 0.351 1.651 sum 0.463 -4.066 -10.842 11.589 Atomic orbital electron populations 1.21845 0.95175 1.01793 1.01692 1.21074 0.95756 0.96231 0.97786 1.21899 1.01293 0.96024 1.01495 1.21650 0.95219 1.00332 0.98042 1.21718 0.95382 1.01686 0.95685 1.21189 0.93647 0.95652 0.85867 0.90057 1.22521 0.93143 0.86028 0.99057 1.86464 1.25557 1.31134 1.95194 1.45825 1.71936 1.11364 1.06165 1.21334 0.73758 0.87602 0.85677 1.90530 1.53758 1.16592 1.86866 1.17988 0.99664 0.92058 0.87162 0.92001 1.20681 0.92652 0.96436 1.44975 0.93281 1.25583 0.97406 0.99975 0.93917 1.70021 1.20526 1.22117 1.41569 0.85619 0.79532 0.78970 0.77954 1.19308 1.21135 1.19910 1.20118 0.92999 0.93370 0.97098 1.20809 0.97558 0.97481 0.97001 1.21322 0.98949 0.99279 0.95767 1.21263 0.92462 1.01351 1.01095 1.21295 0.99606 0.97359 0.96435 1.21126 0.97084 1.00041 0.97855 0.93790 0.91693 0.92525 0.90061 0.92412 0.91849 0.93962 0.92295 0.93714 0.90768 0.88883 0.90434 0.96060 0.76063 0.76067 0.92474 0.88956 0.84678 0.83490 0.84267 0.87704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.19 71.98 0.66 -2.15 16 2 C -0.09 -1.79 2.92 -10.80 -0.03 -1.82 16 3 C -0.15 -3.07 8.95 71.98 0.64 -2.43 16 4 C -0.11 -2.79 4.57 30.60 0.14 -2.65 16 5 C -0.11 -2.58 4.23 30.60 0.13 -2.45 16 6 C 0.14 4.35 2.37 44.99 0.11 4.45 16 7 H 0.08 2.67 7.58 -2.38 -0.02 2.66 16 8 C 0.07 2.01 6.85 71.98 0.49 2.51 16 9 O -0.58 -15.70 12.83 -148.98 -1.91 -17.61 16 10 N -0.70 -27.10 4.38 -442.52 -1.94 -29.03 16 11 C 0.53 24.46 7.01 87.66 0.61 25.07 16 12 O -0.60 -29.70 15.08 -3.05 -0.05 -29.75 16 13 C 0.05 2.65 2.37 -13.03 -0.03 2.61 16 14 H 0.06 3.36 7.13 -2.39 -0.02 3.35 16 15 C -0.51 -26.80 7.47 25.60 0.19 -26.61 16 16 H 0.05 2.65 7.82 -2.91 -0.02 2.63 16 17 C 0.03 1.73 5.45 84.65 0.46 2.19 16 18 N -0.91 -49.68 12.84 21.45 0.28 -49.41 16 19 Si 0.95 42.23 29.54 68.60 2.03 44.26 16 20 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 21 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 23 C -0.03 -1.72 4.30 -19.87 -0.09 -1.81 16 24 C -0.11 -5.15 8.30 22.27 0.18 -4.97 16 25 C -0.14 -5.26 10.05 22.27 0.22 -5.03 16 26 C -0.14 -5.06 10.05 22.27 0.22 -4.84 16 27 C -0.13 -4.88 10.05 22.27 0.22 -4.66 16 28 C -0.14 -6.49 9.67 22.27 0.22 -6.27 16 29 H 0.04 0.93 8.14 -2.39 -0.02 0.92 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.06 1.19 6.56 -2.39 -0.02 1.18 16 34 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.04 1.30 7.75 -2.39 -0.02 1.28 16 38 H 0.07 1.92 6.15 -2.39 -0.01 1.90 16 39 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.39 7.19 9.12 -74.06 -0.68 6.51 16 43 H 0.40 15.85 8.49 -92.71 -0.79 15.06 16 44 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 45 H 0.09 4.49 7.90 -2.91 -0.02 4.47 16 46 H 0.14 4.32 8.06 -2.91 -0.02 4.30 16 47 H 0.15 3.91 8.06 -2.91 -0.02 3.89 16 48 H 0.14 4.24 8.06 -2.91 -0.02 4.22 16 49 H 0.10 4.73 7.96 -2.91 -0.02 4.71 16 Total: -1.00 -65.36 400.12 2.24 -63.12 By element: Atomic # 1 Polarization: 47.80 SS G_CDS: -0.53 Total: 47.27 kcal Atomic # 6 Polarization: -33.22 SS G_CDS: 4.36 Total: -28.86 kcal Atomic # 7 Polarization: -76.78 SS G_CDS: -1.66 Total: -78.44 kcal Atomic # 8 Polarization: -45.40 SS G_CDS: -1.96 Total: -47.35 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -65.36 2.24 -63.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434189541.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.189 kcal (2) G-P(sol) polarization free energy of solvation -65.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds