Wall clock time and date at job start Tue Mar 31 2020 12:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47256 * 2 1 4 4 C 1.53007 * 109.47271 * 185.00015 * 3 2 1 5 5 C 1.53005 * 109.46680 * 65.42052 * 4 3 2 6 6 C 1.52999 * 109.47357 * 305.00049 * 3 2 1 7 7 N 1.46492 * 109.47569 * 180.02562 * 6 3 2 8 8 C 1.34776 * 120.00475 * 174.79982 * 7 6 3 9 9 O 1.21287 * 119.99690 * 0.02562 * 8 7 6 10 10 C 1.50702 * 120.00558 * 179.97438 * 8 7 6 11 11 H 1.09001 * 109.46484 * 300.00345 * 10 8 7 12 12 C 1.50697 * 109.46663 * 60.00078 * 10 8 7 13 13 H 1.08002 * 119.99833 * 234.88041 * 12 10 8 14 14 C 1.37871 * 120.00507 * 54.88287 * 12 10 8 15 15 N 1.31518 * 119.99847 * 2.07247 * 14 12 10 16 16 Si 1.86803 * 120.00200 * 182.07248 * 14 12 10 17 17 H 1.48497 * 109.47184 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47106 * 120.00092 * 16 14 12 19 19 H 1.48502 * 109.46813 * 239.99761 * 16 14 12 20 20 C 1.50691 * 109.47204 * 180.02562 * 10 8 7 21 21 C 1.38239 * 120.00412 * 46.76135 * 20 10 8 22 22 C 1.38233 * 120.00343 * 179.97438 * 21 20 10 23 23 C 1.38239 * 119.99734 * 359.96264 * 22 21 20 24 24 C 1.38228 * 120.00123 * 359.97438 * 23 22 21 25 25 C 1.38230 * 120.00210 * 0.07547 * 24 23 22 26 26 O 1.42902 * 109.47257 * 65.00166 * 3 2 1 27 27 C 1.42897 * 113.99947 * 60.00039 * 26 3 2 28 28 H 1.08996 * 109.47337 * 60.00071 * 1 2 3 29 29 H 1.09001 * 109.47563 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47213 * 299.99919 * 1 2 3 31 31 H 1.09004 * 109.46779 * 239.99779 * 2 1 3 32 32 H 1.09007 * 109.46967 * 120.00286 * 2 1 3 33 33 H 1.08997 * 109.46799 * 185.42022 * 4 3 2 34 34 H 1.08998 * 109.47059 * 305.42362 * 4 3 2 35 35 H 1.08997 * 109.46576 * 185.08312 * 5 4 3 36 36 H 1.09002 * 109.47358 * 305.08383 * 5 4 3 37 37 H 1.09002 * 109.46986 * 65.08781 * 5 4 3 38 38 H 1.09003 * 109.46993 * 60.06963 * 6 3 2 39 39 H 1.09003 * 109.46868 * 300.07886 * 6 3 2 40 40 H 0.97004 * 120.00024 * 354.80353 * 7 6 3 41 41 H 0.97003 * 120.00286 * 180.02562 * 15 14 12 42 42 H 1.07998 * 119.99278 * 359.97438 * 21 20 10 43 43 H 1.07999 * 120.00079 * 179.97438 * 22 21 20 44 44 H 1.08001 * 119.99559 * 179.72101 * 23 22 21 45 45 H 1.08005 * 119.99808 * 179.97438 * 24 23 22 46 46 H 1.08004 * 120.00360 * 179.97438 * 25 24 23 47 47 H 1.09003 * 109.46890 * 180.02562 * 27 26 3 48 48 H 1.09000 * 109.46991 * 300.00009 * 27 26 3 49 49 H 1.08996 * 109.47197 * 60.00098 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5649 1.4443 -0.1257 5 6 3.9645 0.8832 -1.4919 6 6 1.4300 2.1991 -1.1816 7 7 1.9187 3.5801 -1.1820 8 6 1.5966 4.4088 -2.1949 9 8 0.9015 4.0112 -3.1059 10 6 2.0989 5.8296 -2.1950 11 1 1.7326 6.3444 -1.3068 12 6 3.6059 5.8295 -2.1900 13 1 4.1434 6.3685 -1.4239 14 6 4.2985 5.1414 -3.1635 15 7 3.6448 4.5189 -4.1200 16 14 6.1655 5.0931 -3.1239 17 1 6.6560 5.8659 -1.9545 18 1 6.6221 3.6844 -3.0125 19 1 6.7026 5.6902 -4.3731 20 6 1.6002 6.5386 -3.4277 21 6 0.2722 6.4324 -3.7965 22 6 -0.1854 7.0832 -4.9269 23 6 0.6849 7.8409 -5.6882 24 6 2.0126 7.9482 -5.3187 25 6 2.4704 7.2965 -4.1888 26 8 1.6620 2.0813 1.2211 27 6 2.1825 1.4501 2.3927 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.9361 2.4645 -0.0292 34 1 3.9951 0.8250 0.6613 35 1 5.0499 0.8001 -1.5471 36 1 3.5174 -0.1020 -1.6251 37 1 3.6110 1.5518 -2.2768 38 1 0.3437 2.1989 -1.0913 39 1 1.7172 1.7109 -2.1129 40 1 2.4744 3.8981 -0.4532 41 1 4.1320 4.0344 -4.8047 42 1 -0.4078 5.8410 -3.2014 43 1 -1.2229 6.9999 -5.2153 44 1 0.3284 8.3457 -6.5739 45 1 2.6926 8.5398 -5.9137 46 1 3.5078 7.3800 -3.9003 47 1 1.8502 1.9944 3.2767 48 1 1.8220 0.4226 2.4423 49 1 3.2717 1.4515 2.3527 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001544816125.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:01 Heat of formation + Delta-G solvation = -65.807547 kcal Electronic energy + Delta-G solvation = -28839.448328 eV Core-core repulsion = 25152.363500 eV Total energy + Delta-G solvation = -3687.084828 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.74664 -38.64175 -37.17842 -34.69880 -33.53360 -32.66817 -31.67954 -30.75374 -29.61561 -28.17095 -27.05614 -25.71482 -24.70745 -23.57827 -22.83596 -21.21099 -20.46677 -19.12284 -18.93172 -16.89310 -16.57404 -15.81308 -15.60668 -15.25059 -15.11450 -14.78349 -14.53913 -14.24124 -13.96084 -13.62515 -13.53826 -13.25962 -13.09526 -12.52591 -12.39273 -12.31014 -12.10988 -12.03503 -11.88839 -11.71495 -11.56647 -11.49115 -11.21903 -11.16936 -10.98369 -10.90159 -10.70802 -10.43981 -10.38324 -10.05741 -9.99435 -9.60229 -9.34191 -9.29561 -8.66689 -8.20782 -7.81308 -7.62597 -7.33222 -6.08834 -4.24156 2.61158 2.67402 3.19492 3.30439 3.31828 3.84382 4.22254 4.32057 4.51972 4.72804 4.95074 5.00102 5.11081 5.19505 5.24775 5.31551 5.38221 5.45205 5.55636 5.65469 5.74475 5.80335 5.89089 5.90769 5.98122 6.03147 6.08835 6.12042 6.14627 6.21108 6.26592 6.38178 6.43213 6.48031 6.64037 6.70639 6.74724 6.88272 6.99492 7.20101 7.27807 7.32887 7.60515 7.67385 7.71891 7.73934 7.86559 8.23142 8.34025 8.70487 8.92809 9.41642 9.82223 10.91412 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.013712 B = 0.004955 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.584793 B = 5649.452644 C = 6875.520281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.148 4.148 3 C 0.109 3.891 4 C -0.144 4.144 5 C -0.153 4.153 6 C 0.142 3.858 7 N -0.728 5.728 8 C 0.552 3.448 9 O -0.552 6.552 10 C 0.055 3.945 11 H 0.056 0.944 12 C -0.537 4.537 13 H 0.066 0.934 14 C 0.076 3.924 15 N -0.840 5.840 16 Si 0.881 3.119 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.283 1.283 20 C -0.012 4.012 21 C -0.099 4.099 22 C -0.145 4.145 23 C -0.146 4.146 24 C -0.148 4.148 25 C -0.066 4.066 26 O -0.370 6.370 27 C 0.025 3.975 28 H 0.063 0.937 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.058 0.942 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.074 0.926 38 H 0.059 0.941 39 H 0.076 0.924 40 H 0.398 0.602 41 H 0.263 0.737 42 H 0.107 0.893 43 H 0.100 0.900 44 H 0.099 0.901 45 H 0.100 0.900 46 H 0.127 0.873 47 H 0.081 0.919 48 H 0.040 0.960 49 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.019 -6.152 8.632 10.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.186 4.186 3 C 0.069 3.931 4 C -0.181 4.181 5 C -0.211 4.211 6 C 0.018 3.982 7 N -0.381 5.381 8 C 0.341 3.659 9 O -0.429 6.429 10 C 0.034 3.966 11 H 0.073 0.927 12 C -0.574 4.574 13 H 0.084 0.916 14 C -0.131 4.131 15 N -0.473 5.473 16 Si 0.708 3.292 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.013 4.013 21 C -0.117 4.117 22 C -0.163 4.163 23 C -0.164 4.164 24 C -0.167 4.167 25 C -0.084 4.084 26 O -0.289 6.289 27 C -0.071 4.071 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.232 0.768 41 H 0.073 0.927 42 H 0.125 0.875 43 H 0.118 0.882 44 H 0.117 0.883 45 H 0.119 0.881 46 H 0.145 0.855 47 H 0.100 0.900 48 H 0.058 0.942 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.631 -6.404 7.775 10.411 hybrid contribution 1.710 -0.515 0.116 1.789 sum -0.921 -6.919 7.891 10.535 Atomic orbital electron populations 1.21785 0.95103 1.01167 1.02887 1.22118 0.97184 0.96533 1.02751 1.21822 0.93860 0.92060 0.85323 1.22054 0.95144 1.02678 0.98274 1.21848 1.00957 1.00873 0.97378 1.21160 0.97986 0.83989 0.95085 1.45671 1.55537 1.10449 1.26407 1.20914 0.76881 0.88656 0.79466 1.90528 1.39322 1.77872 1.35200 1.17882 0.97111 0.88864 0.92739 0.92652 1.20718 0.88615 1.34513 1.13593 0.91623 1.25014 0.97930 0.95063 0.95119 1.70093 1.34792 1.30334 1.12060 0.86702 0.86353 0.77934 0.78197 1.19580 1.20941 1.20907 1.19833 0.91424 0.93458 0.96620 1.20987 0.96242 0.97524 0.96990 1.20818 0.98408 1.00047 0.97013 1.20757 0.94328 1.01634 0.99674 1.20977 0.95222 1.02032 0.98435 1.21130 1.00008 0.94377 0.92887 1.88017 1.73926 1.53708 1.13244 1.22745 0.98362 0.97691 0.88347 0.91840 0.93137 0.92247 0.90540 0.91577 0.90291 0.92341 0.93013 0.93017 0.90727 0.92283 0.90626 0.76781 0.92717 0.87459 0.88179 0.88303 0.88138 0.85532 0.90041 0.94159 0.93937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.32 37.16 0.35 -1.41 16 2 C -0.15 -1.73 4.65 -26.74 -0.12 -1.86 16 3 C 0.11 1.52 0.25 -90.62 -0.02 1.50 16 4 C -0.14 -2.02 4.35 -26.73 -0.12 -2.13 16 5 C -0.15 -2.30 9.11 37.16 0.34 -1.96 16 6 C 0.14 2.50 3.82 -4.05 -0.02 2.49 16 7 N -0.73 -14.60 5.03 -60.30 -0.30 -14.90 16 8 C 0.55 13.07 5.43 -10.98 -0.06 13.01 16 9 O -0.55 -14.69 13.90 5.55 0.08 -14.62 16 10 C 0.06 1.31 2.78 -94.08 -0.26 1.05 16 11 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 12 C -0.54 -13.05 7.09 -34.44 -0.24 -13.29 16 13 H 0.07 1.57 7.81 -52.49 -0.41 1.16 16 14 C 0.08 1.90 4.04 -17.82 -0.07 1.83 16 15 N -0.84 -22.53 10.92 55.43 0.61 -21.92 16 16 Si 0.88 19.66 29.54 -169.99 -5.02 14.64 16 17 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 C -0.01 -0.30 4.53 -104.62 -0.47 -0.77 16 21 C -0.10 -2.29 8.21 -39.58 -0.32 -2.62 16 22 C -0.14 -3.03 10.05 -39.58 -0.40 -3.43 16 23 C -0.15 -2.94 10.05 -39.58 -0.40 -3.34 16 24 C -0.15 -3.16 10.05 -39.59 -0.40 -3.55 16 25 C -0.07 -1.56 8.25 -39.58 -0.33 -1.89 16 26 O -0.37 -5.21 9.56 -35.23 -0.34 -5.55 16 27 C 0.03 0.27 10.22 101.05 1.03 1.30 16 28 H 0.06 0.81 6.35 -51.93 -0.33 0.48 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.70 7.82 -51.93 -0.41 0.29 16 31 H 0.08 0.88 6.27 -51.93 -0.33 0.56 16 32 H 0.07 0.68 6.29 -51.93 -0.33 0.35 16 33 H 0.08 1.25 7.13 -51.93 -0.37 0.88 16 34 H 0.06 0.70 6.84 -51.93 -0.36 0.35 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.05 0.67 6.26 -51.93 -0.33 0.34 16 37 H 0.07 1.38 6.65 -51.93 -0.35 1.04 16 38 H 0.06 1.06 6.35 -51.93 -0.33 0.73 16 39 H 0.08 1.46 6.45 -51.93 -0.34 1.12 16 40 H 0.40 7.65 7.23 -40.82 -0.29 7.35 16 41 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 42 H 0.11 2.47 6.97 -52.49 -0.37 2.11 16 43 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 44 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 45 H 0.10 1.88 8.06 -52.48 -0.42 1.45 16 46 H 0.13 3.08 6.07 -52.48 -0.32 2.76 16 47 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.04 0.38 6.31 -51.93 -0.33 0.05 16 49 H 0.04 0.43 6.54 -51.93 -0.34 0.09 16 LS Contribution 374.87 15.07 5.65 5.65 Total: -1.00 -28.95 374.87 -8.45 -37.40 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: -7.60 Total: 14.36 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -1.52 Total: -15.06 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: 0.30 Total: -36.82 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.26 Total: -20.16 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -28.95 -8.45 -37.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001544816125.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.413 kcal (2) G-P(sol) polarization free energy of solvation -28.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds