Wall clock time and date at job start Tue Mar 31 2020 12:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47256 * 2 1 4 4 C 1.53007 * 109.47271 * 185.00015 * 3 2 1 5 5 C 1.53005 * 109.46680 * 65.42052 * 4 3 2 6 6 C 1.52999 * 109.47357 * 305.00049 * 3 2 1 7 7 N 1.46492 * 109.47569 * 180.02562 * 6 3 2 8 8 C 1.34776 * 120.00475 * 174.79982 * 7 6 3 9 9 O 1.21287 * 119.99690 * 0.02562 * 8 7 6 10 10 C 1.50702 * 120.00558 * 179.97438 * 8 7 6 11 11 H 1.09001 * 109.46484 * 300.00345 * 10 8 7 12 12 C 1.50697 * 109.46663 * 60.00078 * 10 8 7 13 13 H 1.08002 * 119.99833 * 234.88041 * 12 10 8 14 14 C 1.37871 * 120.00507 * 54.88287 * 12 10 8 15 15 N 1.31518 * 119.99847 * 2.07247 * 14 12 10 16 16 Si 1.86803 * 120.00200 * 182.07248 * 14 12 10 17 17 H 1.48497 * 109.47184 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47106 * 120.00092 * 16 14 12 19 19 H 1.48502 * 109.46813 * 239.99761 * 16 14 12 20 20 C 1.50691 * 109.47204 * 180.02562 * 10 8 7 21 21 C 1.38239 * 120.00412 * 46.76135 * 20 10 8 22 22 C 1.38233 * 120.00343 * 179.97438 * 21 20 10 23 23 C 1.38239 * 119.99734 * 359.96264 * 22 21 20 24 24 C 1.38228 * 120.00123 * 359.97438 * 23 22 21 25 25 C 1.38230 * 120.00210 * 0.07547 * 24 23 22 26 26 O 1.42902 * 109.47257 * 65.00166 * 3 2 1 27 27 C 1.42897 * 113.99947 * 60.00039 * 26 3 2 28 28 H 1.08996 * 109.47337 * 60.00071 * 1 2 3 29 29 H 1.09001 * 109.47563 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47213 * 299.99919 * 1 2 3 31 31 H 1.09004 * 109.46779 * 239.99779 * 2 1 3 32 32 H 1.09007 * 109.46967 * 120.00286 * 2 1 3 33 33 H 1.08997 * 109.46799 * 185.42022 * 4 3 2 34 34 H 1.08998 * 109.47059 * 305.42362 * 4 3 2 35 35 H 1.08997 * 109.46576 * 185.08312 * 5 4 3 36 36 H 1.09002 * 109.47358 * 305.08383 * 5 4 3 37 37 H 1.09002 * 109.46986 * 65.08781 * 5 4 3 38 38 H 1.09003 * 109.46993 * 60.06963 * 6 3 2 39 39 H 1.09003 * 109.46868 * 300.07886 * 6 3 2 40 40 H 0.97004 * 120.00024 * 354.80353 * 7 6 3 41 41 H 0.97003 * 120.00286 * 180.02562 * 15 14 12 42 42 H 1.07998 * 119.99278 * 359.97438 * 21 20 10 43 43 H 1.07999 * 120.00079 * 179.97438 * 22 21 20 44 44 H 1.08001 * 119.99559 * 179.72101 * 23 22 21 45 45 H 1.08005 * 119.99808 * 179.97438 * 24 23 22 46 46 H 1.08004 * 120.00360 * 179.97438 * 25 24 23 47 47 H 1.09003 * 109.46890 * 180.02562 * 27 26 3 48 48 H 1.09000 * 109.46991 * 300.00009 * 27 26 3 49 49 H 1.08996 * 109.47197 * 60.00098 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5649 1.4443 -0.1257 5 6 3.9645 0.8832 -1.4919 6 6 1.4300 2.1991 -1.1816 7 7 1.9187 3.5801 -1.1820 8 6 1.5966 4.4088 -2.1949 9 8 0.9015 4.0112 -3.1059 10 6 2.0989 5.8296 -2.1950 11 1 1.7326 6.3444 -1.3068 12 6 3.6059 5.8295 -2.1900 13 1 4.1434 6.3685 -1.4239 14 6 4.2985 5.1414 -3.1635 15 7 3.6448 4.5189 -4.1200 16 14 6.1655 5.0931 -3.1239 17 1 6.6560 5.8659 -1.9545 18 1 6.6221 3.6844 -3.0125 19 1 6.7026 5.6902 -4.3731 20 6 1.6002 6.5386 -3.4277 21 6 0.2722 6.4324 -3.7965 22 6 -0.1854 7.0832 -4.9269 23 6 0.6849 7.8409 -5.6882 24 6 2.0126 7.9482 -5.3187 25 6 2.4704 7.2965 -4.1888 26 8 1.6620 2.0813 1.2211 27 6 2.1825 1.4501 2.3927 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.9361 2.4645 -0.0292 34 1 3.9951 0.8250 0.6613 35 1 5.0499 0.8001 -1.5471 36 1 3.5174 -0.1020 -1.6251 37 1 3.6110 1.5518 -2.2768 38 1 0.3437 2.1989 -1.0913 39 1 1.7172 1.7109 -2.1129 40 1 2.4744 3.8981 -0.4532 41 1 4.1320 4.0344 -4.8047 42 1 -0.4078 5.8410 -3.2014 43 1 -1.2229 6.9999 -5.2153 44 1 0.3284 8.3457 -6.5739 45 1 2.6926 8.5398 -5.9137 46 1 3.5078 7.3800 -3.9003 47 1 1.8502 1.9944 3.2767 48 1 1.8220 0.4226 2.4423 49 1 3.2717 1.4515 2.3527 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001544816125.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:00 Heat of formation + Delta-G solvation = -82.009301 kcal Electronic energy + Delta-G solvation = -28840.150889 eV Core-core repulsion = 25152.363500 eV Total energy + Delta-G solvation = -3687.787389 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.07644 -40.25179 -38.88132 -35.93318 -35.43245 -34.15346 -32.77209 -32.60090 -31.33651 -29.62542 -28.49413 -26.82373 -26.13964 -25.29912 -23.89292 -22.94121 -22.16381 -20.86606 -20.13888 -18.63210 -17.97419 -17.26395 -17.08907 -16.76480 -16.71355 -16.19667 -15.88594 -15.70289 -15.48623 -15.28146 -14.96597 -14.58008 -14.23967 -14.13007 -13.98270 -13.91250 -13.67202 -13.41919 -13.20281 -13.04354 -12.94761 -12.78940 -12.75352 -12.56698 -12.48929 -12.27862 -12.22806 -11.99792 -11.75211 -11.50168 -11.40161 -11.18960 -11.10733 -10.61930 -10.35976 -10.09222 -9.53066 -9.36015 -9.07820 -8.03407 -6.22595 0.89781 0.94965 1.38983 1.45259 1.53029 2.36974 2.50481 2.72495 2.94879 3.23425 3.38116 3.63706 3.80523 3.89220 4.23786 4.34970 4.35871 4.37395 4.45013 4.50738 4.51697 4.57542 4.61130 4.61368 4.70811 4.73850 4.82541 4.85094 4.93874 4.97773 5.02100 5.02987 5.10371 5.12977 5.16245 5.19312 5.28476 5.40836 5.41669 5.47825 5.56566 5.73406 5.90488 5.94964 6.00132 6.04434 6.34968 6.45559 6.55110 6.79046 7.15908 7.45441 7.99946 8.95531 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.013712 B = 0.004955 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.584793 B = 5649.452644 C = 6875.520281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.144 4.144 3 C 0.119 3.881 4 C -0.140 4.140 5 C -0.148 4.148 6 C 0.144 3.856 7 N -0.717 5.717 8 C 0.550 3.450 9 O -0.587 6.587 10 C 0.046 3.954 11 H 0.061 0.939 12 C -0.532 4.532 13 H 0.067 0.933 14 C 0.046 3.954 15 N -0.868 5.868 16 Si 0.934 3.066 17 H -0.262 1.262 18 H -0.285 1.285 19 H -0.288 1.288 20 C -0.034 4.034 21 C -0.118 4.118 22 C -0.146 4.146 23 C -0.141 4.141 24 C -0.152 4.152 25 C -0.087 4.087 26 O -0.391 6.391 27 C 0.018 3.982 28 H 0.042 0.958 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.057 0.943 34 H 0.089 0.911 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.030 0.970 38 H 0.052 0.948 39 H 0.055 0.945 40 H 0.402 0.598 41 H 0.254 0.746 42 H 0.097 0.903 43 H 0.129 0.871 44 H 0.138 0.862 45 H 0.126 0.874 46 H 0.112 0.888 47 H 0.094 0.906 48 H 0.057 0.943 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.687 -6.753 9.493 11.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.181 4.181 3 C 0.079 3.921 4 C -0.177 4.177 5 C -0.205 4.205 6 C 0.020 3.980 7 N -0.369 5.369 8 C 0.339 3.661 9 O -0.467 6.467 10 C 0.025 3.975 11 H 0.079 0.921 12 C -0.570 4.570 13 H 0.086 0.914 14 C -0.159 4.159 15 N -0.503 5.503 16 Si 0.760 3.240 17 H -0.185 1.185 18 H -0.211 1.211 19 H -0.215 1.215 20 C -0.035 4.035 21 C -0.136 4.136 22 C -0.164 4.164 23 C -0.159 4.159 24 C -0.170 4.170 25 C -0.105 4.105 26 O -0.311 6.311 27 C -0.077 4.077 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.097 0.903 32 H 0.110 0.890 33 H 0.075 0.925 34 H 0.107 0.893 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.050 0.950 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.237 0.763 41 H 0.064 0.936 42 H 0.115 0.885 43 H 0.147 0.853 44 H 0.156 0.844 45 H 0.144 0.856 46 H 0.130 0.870 47 H 0.113 0.887 48 H 0.076 0.924 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.283 -7.004 8.689 11.391 hybrid contribution 1.551 -0.289 -0.112 1.582 sum -0.732 -7.293 8.577 11.282 Atomic orbital electron populations 1.21754 0.95038 1.02176 1.01753 1.22113 0.97214 0.94753 1.04069 1.21620 0.93482 0.92741 0.84224 1.22024 0.95205 1.01952 0.98561 1.21781 1.01176 1.01023 0.96567 1.21199 0.97724 0.82741 0.96332 1.45573 1.54680 1.11239 1.25410 1.20921 0.76517 0.89018 0.79609 1.90490 1.41041 1.78500 1.36707 1.17990 0.97005 0.89217 0.93312 0.92085 1.20849 0.89051 1.33870 1.13240 0.91443 1.25485 1.01002 0.94713 0.94703 1.70249 1.35795 1.31460 1.12750 0.85872 0.82415 0.77650 0.78056 1.18546 1.21117 1.21468 1.19936 0.92178 0.94210 0.97166 1.21036 0.95884 0.98457 0.98252 1.21185 1.00122 0.99122 0.95991 1.21168 0.93577 1.00774 1.00400 1.21309 0.96452 1.01545 0.97671 1.21112 0.99317 0.95772 0.94332 1.87981 1.74435 1.54685 1.13995 1.22977 0.98846 0.98690 0.87219 0.93901 0.91040 0.92459 0.90295 0.89037 0.92456 0.89263 0.92664 0.90847 0.95039 0.93029 0.92723 0.76317 0.93627 0.88482 0.85322 0.84402 0.85566 0.87040 0.88748 0.92441 0.93241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 9.32 71.98 0.67 -2.58 16 2 C -0.14 -3.07 4.65 30.59 0.14 -2.93 16 3 C 0.12 3.23 0.25 -10.79 0.00 3.23 16 4 C -0.14 -3.76 4.35 30.60 0.13 -3.63 16 5 C -0.15 -4.39 9.11 71.98 0.66 -3.73 16 6 C 0.14 5.24 3.82 86.38 0.33 5.57 16 7 N -0.72 -29.91 5.03 -463.07 -2.33 -32.25 16 8 C 0.55 27.17 5.43 87.66 0.48 27.64 16 9 O -0.59 -32.73 13.90 -3.05 -0.04 -32.77 16 10 C 0.05 2.26 2.78 -13.04 -0.04 2.22 16 11 H 0.06 2.82 8.14 -2.39 -0.02 2.80 16 12 C -0.53 -26.45 7.09 25.60 0.18 -26.27 16 13 H 0.07 3.26 7.81 -2.91 -0.02 3.23 16 14 C 0.05 2.32 4.04 84.65 0.34 2.66 16 15 N -0.87 -48.05 10.92 21.45 0.23 -47.81 16 16 Si 0.93 40.87 29.54 68.60 2.03 42.90 16 17 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 18 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 19 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 20 C -0.03 -1.68 4.53 -19.87 -0.09 -1.77 16 21 C -0.12 -5.56 8.21 22.27 0.18 -5.37 16 22 C -0.15 -5.96 10.05 22.27 0.22 -5.73 16 23 C -0.14 -5.38 10.05 22.27 0.22 -5.16 16 24 C -0.15 -6.28 10.05 22.27 0.22 -6.05 16 25 C -0.09 -4.17 8.25 22.27 0.18 -3.99 16 26 O -0.39 -10.51 9.56 -148.98 -1.42 -11.94 16 27 C 0.02 0.34 10.22 113.37 1.16 1.50 16 28 H 0.04 1.09 6.35 -2.39 -0.02 1.08 16 29 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.06 1.26 7.82 -2.38 -0.02 1.24 16 31 H 0.08 1.66 6.27 -2.38 -0.01 1.65 16 32 H 0.09 1.53 6.29 -2.38 -0.01 1.52 16 33 H 0.06 1.79 7.13 -2.39 -0.02 1.77 16 34 H 0.09 1.87 6.84 -2.39 -0.02 1.86 16 35 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.07 1.81 6.26 -2.39 -0.01 1.79 16 37 H 0.03 1.20 6.65 -2.39 -0.02 1.18 16 38 H 0.05 1.94 6.35 -2.39 -0.02 1.93 16 39 H 0.05 2.23 6.45 -2.39 -0.02 2.21 16 40 H 0.40 15.92 7.23 -92.71 -0.67 15.25 16 41 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 42 H 0.10 4.66 6.97 -2.91 -0.02 4.64 16 43 H 0.13 4.41 8.06 -2.91 -0.02 4.38 16 44 H 0.14 4.16 8.06 -2.91 -0.02 4.14 16 45 H 0.13 4.46 8.06 -2.91 -0.02 4.44 16 46 H 0.11 5.55 6.07 -2.91 -0.02 5.53 16 47 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 48 H 0.06 0.87 6.31 -2.39 -0.02 0.85 16 49 H 0.05 0.84 6.54 -2.39 -0.02 0.83 16 Total: -1.00 -64.34 374.87 3.74 -60.60 By element: Atomic # 1 Polarization: 45.37 SS G_CDS: 0.28 Total: 45.65 kcal Atomic # 6 Polarization: -29.38 SS G_CDS: 5.00 Total: -24.38 kcal Atomic # 7 Polarization: -77.96 SS G_CDS: -2.10 Total: -80.06 kcal Atomic # 8 Polarization: -43.24 SS G_CDS: -1.47 Total: -44.71 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal Total: -64.34 3.74 -60.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001544816125.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.412 kcal (2) G-P(sol) polarization free energy of solvation -64.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds